Silkworm Genome Informatics Database

Gene

KWMTBOMO10379

Annotation

hypothetical_protein_M514_07281_[Trichuris_suis]

Location

Bomo_Chr17(+):9274380-9278538 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.793

CDS

ATGGATAAATACAATCCAGATACATTCAGAATTGACGATTACATTGATTTTTTCGAAAACAAATGCAAAATTCTTGATATCGATAACAGCGACTTACAGAAAGATTTGCTTCTGAATTTACTAACACCAGAGATATTCCACGAATTAAAAGTAGCTTTAACGCCTGATTTCGATATAGCTACATACAGCGAAATTTGTAACAAATTATTAGACCTCTATCGCATAAAAACGACGAGTAATAACAAAGAAGAAAGCGATGATGAAGTTATCTGCAGCGTCTTGGGTACACGTAAGAGAGAATGCAAACAAATCGATGTACGCATCAATGACATACCTTGCACTATGGATTGGGACCCCGGCTCTGCGTATTCAATAATAAACACGACATTATGGAAAAAATTAGGATCACCATCTTTACAACCCGCCCCGAAACTTAAGGCCTACGGTAACACAAACTTAAAAACAAAGGGAATTACAAAAGTAACAGTCGAAGTCGACGGACTGCAAAAACTTCTACCTGTGGTCGTAATGAAAAATGCCAAACCAATGTTATTTGGTTTACATTGGAGTGAAGTTTTTGAAATGGAATTTCCAAAACCAGTATACTCCATCAAAACATCAACACCGATGACTCTTAAACAAATATTGGATAAACATGTACAACTCTTTGATGGAAAACTAGGAAAAGTTAACAATTATTACGTAAACATACATGTCAAACCAGAAGCTGAACCGATCCACCTTCCTGCACGGCCTATAAAATTCAGCATGAAAAAGAATATAGAAAGGGAGTTAGATCGTCTGATCTCAGAAGGGATAGTGGAAAAAGTAGATCCTAATATTACACCTATTGAATGGGCTACACCCACAGTTAACATTCTGAAATCTACAGGGGAAATTAGGATATGTGGAGACTACAGAACTACACTTAATCCAGTACTTATTAAACATCTACACCCAGTTCCGGTTTTCGATCAACTACGCCAAAATCTCGCAAACGATACAAAGAAATGCATAACGTCTTCACAACCATTAATTGCATTTGACGAGAAACGTCCCCTTTATTTAGCATGTGACGCTTCCGAAAAGGGATTGGGTGCAGTATTATTCCACAAGGACTCGAACATAGAACAGCCAATTGCTTTTGCTTCAAGGAAACTACGACCAGCGGAAATGAAATATTCCGTTATTGATCGGGAAGCTTTAGCAATAGTATTTGGTATAAAAAAATTTGATCAGTATTTGAGAGGAACGAAATTTAATCTAGTTACGGACCATAAGCCTCTTATACATATTATGGGTGCACGCCGCAACCTTCCTAAACTAGCCAATAACCGATTGGTAAGATGGGCCCTAGTAGTGGGAAGTTATCAATATGACATTTACTACAGGAAAGGTGAAAATAACACATTAGCTGATTGCCTTTCCAGATTACCAAACCCTGAAACTGAACCCTCCGAGACAGAAGGGCTTGTACATAAAATAGATCTACGTCTTTTGAGCACTCGAATGACTGACCTTAACCTATCAGAACAGTTACTTATGAAAACAACTGCAAAGGATCATATACTCACAAAAGTTTGTCATAATTTAAAAACCGGCTGGAGAGAATCAGAATACAATCCAGAAATGAAACCATTCTACAGAAACCGGACTGAATTATCTGTTGAGAATAAGATACTTATGAGGCAAGGACGCATCGTTATACCTACAGCACTCCGAAAAGCCATTCTTACATACCTTCATCGAGGACACCCTGGCATTTCTGCTATGAAAGCACTTTCACGTTACTATGTTTGGTGGCCTAACCTTGACGAAGACATAGAATTATTTGTCAAGAAATGTACCAGATGCCAACAGAACCGCCCTTGTAATCCTGAACTTCCTGTATTTTCCTGGTCCATACCAGAAGAAGTATGGGAGAGAATCCATATCGACTTTGCTGGACCGTTCGAAGGATCGTATTGGTTGGTATTGTGCGACGCTCTCTCCAAATGGGTGGAAATACGACCGATGAAACACATCAACACCAGATCACTTTGTCTTACATTAGATAACATATTTTGTACATTTGGCTTACCAAAAATGATTATATCCGATAATGGACCTCAATTTACATCTTATGAATTTAAAGAATATTGCACAAAACAGTCTATTTTACATGTCACATCATCTCCATATCATCCTCGGACAAATGGGCTGGCAGAACGTTTAGTCAGAACATTCAAAAATAGAATGGCATCGGTAGACAACACAAATCTCGAGCGCCGACTATTAGAATTTCTGTTTACATACAGAAACACTCCGCACTCGTCCACTGGTAAATCTCCAGCTGAGATGATGTTTGGAAGACAATTGAATTGCATACTTTCCAACATTCGGCCAGACAAAAGAAGGTTAATGCAGTATTTACAAGTAAAAGAAAATATTCGTACCAGATCACCGAGTTACCGACCAAGTGACCAAGTATATATTAAAACACGCAATGATAAAATATGGGAACCAGCGGTAATTACATCCCGAAAACATAAATATTCATATATTGTTTCAACACCAGGAGGACTAGAAAAACGAAGACACGCTGATCACATCAGGCCACGCGAGTCTTCCACCTCAGAAACCCCGAGGAATGAAAGGGCGCATTCTTCTATGCTGCCGACGACTGCTTCTCCAGACATTGGAATGGAAACATCAATTAGCGAAAGGCTAACTAACAATAAGAATTCGGCAGCAGTACCATTACCTACACCGCAGTCGCCTACAAATGTACAAATTTCTCCAAATTCACCTTCACAGCATTCGAAGTTATACTCCTCACCTGCTCCGGTCTCCACTCCTGTGCCATTTGCTCCGCGTCGAAGTAATCGACCTAAACAGGCACCCCGCCGTCTGATCAACGAGATGTAG

Protein

MDKYNPDTFRIDDYIDFFENKCKILDIDNSDLQKDLLLNLLTPEIFHELKVALTPDFDIATYSEICNKLLDLYRIKTTSNNKEESDDEVICSVLGTRKRECKQIDVRINDIPCTMDWDPGSAYSIINTTLWKKLGSPSLQPAPKLKAYGNTNLKTKGITKVTVEVDGLQKLLPVVVMKNAKPMLFGLHWSEVFEMEFPKPVYSIKTSTPMTLKQILDKHVQLFDGKLGKVNNYYVNIHVKPEAEPIHLPARPIKFSMKKNIERELDRLISEGIVEKVDPNITPIEWATPTVNILKSTGEIRICGDYRTTLNPVLIKHLHPVPVFDQLRQNLANDTKKCITSSQPLIAFDEKRPLYLACDASEKGLGAVLFHKDSNIEQPIAFASRKLRPAEMKYSVIDREALAIVFGIKKFDQYLRGTKFNLVTDHKPLIHIMGARRNLPKLANNRLVRWALVVGSYQYDIYYRKGENNTLADCLSRLPNPETEPSETEGLVHKIDLRLLSTRMTDLNLSEQLLMKTTAKDHILTKVCHNLKTGWRESEYNPEMKPFYRNRTELSVENKILMRQGRIVIPTALRKAILTYLHRGHPGISAMKALSRYYVWWPNLDEDIELFVKKCTRCQQNRPCNPELPVFSWSIPEEVWERIHIDFAGPFEGSYWLVLCDALSKWVEIRPMKHINTRSLCLTLDNIFCTFGLPKMIISDNGPQFTSYEFKEYCTKQSILHVTSSPYHPRTNGLAERLVRTFKNRMASVDNTNLERRLLEFLFTYRNTPHSSTGKSPAEMMFGRQLNCILSNIRPDKRRLMQYLQVKENIRTRSPSYRPSDQVYIKTRNDKIWEPAVITSRKHKYSYIVSTPGGLEKRRHADHIRPRESSTSETPRNERAHSSMLPTTASPDIGMETSISERLTNNKNSAAVPLPTPQSPTNVQISPNSPSQHSKLYSSPAPVSTPVPFAPRRSNRPKQAPRRLINEM

Uniprot

A2TGR5 A0A2G8LRL0 A2TGR4 A0A1S3DTM5 A0A2G8LB01 A0A1S3DTG6 + More
A0A1S3DUJ5 A0A2I4C6V0

Pubmed

17694394 29023486

EMBL

EF199622 ABM90393.1 MRZV01000005 PIK62810.1 EF199621 ABM90392.1 + More
MRZV01000143 PIK57404.1

Proteomes

UP000230750 UP000079169 UP000192220

Pfam

PF00665   rve        + More
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF00078   RVT_1

Interpro

IPR001584   Integrase_cat-core        + More
IPR041577   RT_RNaseH_2
IPR021109   Peptidase_aspartic_dom_sf
IPR034128   K02A2.6-like
IPR041588   Integrase_H2C2
IPR036397   RNaseH_sf
IPR000477   RT_dom
IPR012337   RNaseH-like_sf
IPR036875   Znf_CCHC_sf
IPR001878   Znf_CCHC

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630
SSF57756   SSF57756

Gene 3D

2.40.70.10 3.30.420.10

CDD

cd05484 retropepsin_like_LTR_2

ProteinModelPortal

A2TGR5 A0A2G8LRL0 A2TGR4 A0A1S3DTM5 A0A2G8LB01 A0A1S3DTG6 + More
A0A1S3DUJ5 A0A2I4C6V0

PDB

3S3O E-value=1.03942e-16, Score=216

KEGG

105842438 no KO assigned | (RefSeq) uncharacterized protein K02A2.6-like

GO

GO:0003676 GO:0015074 GO:0008270 GO:0004197 GO:0050790 GO:0006415 GO:0016021 GO:0006418 GO:0003723 GO:0046872 GO:0003824

Length:

968

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00173

Exp number, first 60 AAs:

0.00017

Total prob of N-in:

0.00010

outside

1 - 968

Pi

472.547248

Theta

216.807291

Tajima's D

3.822689

CLR

0.047826

CSRT

0.998050097495125

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree