SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10372
Pre Gene Modal
BGIBMGA007049
Annotation
PREDICTED:_nuclear_pore_complex_protein_Nup214_isoform_X2_[Bombyx_mori]
Location
Bomo_Chr17(-):8899033-8931894      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.404
 

Sequence

CDS
ATGGAATCAAAGTATGGACCAAATTCTATTGATGAACCGAATTTGTTGTATAAATTGCAACACAAGACAAAAGTATTTAACACAACAGAAAAATTGTCAAATCGGGGTTACAATTTGGTGGCCTGTAGCAGCAAATATGGCATTGTTTTCATTGCTGCTCCTGATGGGACACTTTCAGTCTATTCCCTAAAACAACTGATATCTAATGAGACACAACATACAAATGTGAAGCTTCAAGAGTGTGCTACGCATATTGCTGTTAGTTGCGATGATGAACTACTTGCAGTGGCTGGTTCGCAATCTCTTTCCGTGTTTAAAGTCACAGACTTTCAGAATCAGAATGTATCACCATCAATATTTATGAAGACCAATGTGAATCCATCAACATTTGTATCAGCATTACAATGGAACCCTTGCATACCGGACTCTTTAGCATTAGCATTCCAAGATGGTACCTTACTTGCCTGTCAAGTTACCACAAACCAGGTCAAGAAAGTACAAACAAAAGCGAGATGTATTTGTTGGAGTCCAAAAGGGAAACAGTTGGTGACAGGCAACAATGACGGGACACTGTGTCAGTACAAACCAGACTTGACTCTTGCAAAAACAATACCAGCTCCGATGTTACCTGAAGGATCGTCAATTGAAGCATTAGCTGTGTATTGGATATCCACTTTTCAATTTGCTGTCGTTTATAAAAGTATTGGCGATGACAGCCGGCCATCGGTTACAATAGTGAATGCTGGAAAGACGGGACAACCTACTTGCCTCAATTATGAAGATGTATGTTTCAGTATGGGCTCTATCAGGCCCTGGTATTATTTTCTACTTGGGATAGCACAATGGAATATTATTTTAGCTTCATCATCAAACAGTATGGAAATAGCAACGCTGGCATCGACTGACGGTTCCAACTGGATACAGTGGTGTCAAACAGACGAAGGCAGACCAGAGCTACCATTGACAGACAAGAAATTGGAGAATTATCCTGTGGGAATAGCTATTGACACATGTGCCATACAACAACTGCCTTGGGGTGAGAATGAAACGCTTCCATACATGCCGTCCCTGCTGATCGTTTCACAATCTGGTCTTCTAACAATATTCAATATTGTGAACTTGAATCGAGGAGCCCCTCAAGTTTGTGCCCCACCTCAGCAATTCACGTTACCCGCATCATCGTTAACGAGTGAAATACCGGGCGAAACACCAGAAGAAGCTTCAACCGTATCTATCGTACAGCCCAAGCCTCAAGTAATCCAACAAGCTCCGGCCCCTCAGCCCATCCAACAACAACCGAATCCACCAGCATCTGTTCCCGCTGTTAGCAATTTTGCAGCTCAGCCCCAACTCCCGACAAGTGGCTTGAGTGCATCCAATGTAATAAAAGTACCAAAACCGCAATTTACTTCAATGTTTGGATCGGCTGCAACGAATCAAAATAGTCAAGCAATGCCAGAAAAAAAATCACCACCGCCCATACAGCAACAACAGCTTCAGCCTTTATCTCAACCCAAACCACCGGCTGCCGCCAACCAAACAATACACCAACCGCAACCCAAAGCGGCAGTGGCTCCAACTCCTCAATCCCCTCAGATACAGGAGAACGCTGCGCTAAAAGAAGAACAAGAGAGAATCAATAAAATGAAAGCTAACCAAGAATTAAAGAACATGCTCGTTAAAGAAGTTAACGATTTCCAAATGGAACTGTACAAGTTTATGGTTAAAACGAGGGAAACTCAAGTTAAGCTTCAACGCGACATCGAATCTATAAGTGCAAATTTCAATTTAACTTCGCTAGACTCTGAGCAGCTCAAGAAAGATTGTTCACTGGAAGACTTAAGGGGCGCGATAATACAACTAAAATTGGAACTTGTCCGCACCTGCGCTCTAGTCGCAGAAGCCCGTACACATGCTAACACCAAAGATCTACAACAATGGACGCAAGCGGATCCGCTGACAATAAAAAAAGTTGCATCAGTGAAGAAACTTGCTTATTACGTGCGGAATCAACTGGAACAAGCACAGAAAGCGCTGGATTATAAATGGAACGAAATAGTCGAGAATGATCCAAATGCCAAACAGGGAAAGTACATGATACGTCCAAGACTGGACGACGTGTACCAGCCGCTGGTGAAGCAACAAGAGATCCTGAGCCGACAACAGACCGTTTTAAGGAACCTGCGTAATGCACTCAAGGAATGTGACATATTACCGTTAAGCAAATCTCCGTCGCTGTTGAGAAGCACTCCTTTTAGGAACAAAGATCCTCTCTCGAAGTTAACGAAGAACATATTGAATATGAGCATAGAACCGGAAACGAAGACAAAGAAGCCCCTGCTCACGCCGCAAAAGTACGACGCTTTAAGAGATATGCTATCGAACCATAAAATAGTTAAAATAAAGCCAGTAGACATTGAAATGGGACATCACTTGGCGACGATGCGGTCTAAGTACGAAAAATCTATGCAGGAAAAAGCTCAACAAGCAACAAGCGCGGAAAAATACGTAAACAAAGAAGTGCAAGTTAAAATTGAACCTGTTGAAGAAAGCGTGCCCCTTAAAGATGTTATTAAAGCTGAACCTAAAATGGAAACAAAACAATTTACCGAGACAGTAGCGCCGTTCTCGCCCATTCAGAGCAAACCCTCAGTACCGGGACTTCAAAACGTCACTAGAACATTGTTTACCGAACCGAAGCCCGAAGAACCCCGAGTTAGAATTCCTGTTGAATCTTTTAATTTTACTGGAGTTTGCTATGCACCACCCCCATTCTCATACACATCGCCTGTACCTAATATGTCTTCAAATCAAACGCCTAACAATGACTTGAAGCAATTCATGGGACAGAAAATATGCTCACCTATTTCTCCGTTCTCAAATCAACCAGCTACTGCGGAATCGTTAGTGCCGGCCAATAAGTCGACAGCGAATCTTGGACTTAGTCAAAATAGCTTGTCTTCGAGTGCTCAAACACAGCCTGTGGTTTTTGAACCCAAACCTGTGACTGTCGCTTCTGTGAAATCCAGTGAAACCGGCGAACCTGAAGGTGCAGCAAAACCAGCCGACAGCAAGAAGGTTAATAAACCTATTACCAACCTGTTTGGTATGAAACCAACTACCCCATTTGCACCCACCATCTCTAATGTACCGGACGTTTTGAAAAGTCATCAAGAAGTACCGAATACAGAAGTGAGAGCCGTCGTGAAGCACAATGAAAACGCGATAGAGAAACCAAAAGAGAACATAGCGGCCAAAGTCAACGATGAATCTAAAGTCGTTCAAAAGATTGCCGAAAAAGAAAATGTTCCTAAAACGTTTGTCCCGCAAATAGTTAAACCGTCACCGCTGATACCGGTAGTTCAACCAGTTGCAACAAGTTCGAATGTACTAACAACGCAGACCATTCCGATTAAGCTAGAAATGAAATCTGAAACAGCCAAGCAGCCTGATACTCCAGCCACATCTAGTACAACTTCGATATTCAGTGCCGTGAACGAATCTTCCAAGCTAATAGCCGCTTCAACTACTTCACCGATCCAGCCGAAACCTGATGTGCCTACAAAGGATGAACTTTCAACAGAAACTAACACTGCATCACCAGCGACGACTTCTGCTGTCTCCATTTTTGGAACAGCCGTCGCATCACAACCAAAAACTACAGCATCTAGCTCAATATTCAGTACAGCTACGCCTTTTAGTGTTACAACACAAAATTCTATATTTGGAGGATCTGCGACGGGTTCCATATTTGGGACACCACCAGCCACGACCAGTGAGTCACCAAAACCATTGGTGCTTAGCGCACCGAAACCGGTCACATCAGTATTCGGAACGCCTGTACCTGTATCGACCGCAGTACCTAGCGCGAGTGTGACAGCGACCTCAACTATGGCAGCAACAACGACCTCAACTGCGGCGGCCACAACGTCTTCAACTGTTGCCTTTGCCTCAGCAACATCATCGGTATTTTCGGCGTCCGCGACCACACAGTCGTCAACACTTAGCCCGACAACTGCATCTTCGATATTCGGAACTAGCGCAGTCACAACCCAAGCTTCAGCTTTCGGCACACCCACGACAACTGCGAGTGTGTTCACGCCTACCACAAGCGCCCCATCTCTATTCGGGACTGCGACTACAACGACTCAAAGCGTATTCGGTAGCGCTGCATCAGACACACAAGCCTCGTCCATATTTGGAGCTGCGGCGAATCAGTCGTCAGTGTTTGGCCAACCTTCGACCCAAGCGTCGGTGTTTGGAACGCCAACCTCGGCTGCGCCGGCTGCGGCATTTGGATCGCCGAGCCAAACAACACAAACATCGTTGTTTGGTACTGCGACGCCAACGACTTCGGCGTCCGTTTTCGGCGCCCAAACGACTCAACCGTCCTTGTTCGGTAGTCCGACTCAGACGAGTCAAGCCTCTGTGTTTGGGACTCCGTCGCAAAACAAGGCCTCCGTGTTCGGGACCCCCGCTGTCACTCAGCCCTCAGTGTTTGGTAGCTCCACCCAGCCAGCTCAAACATCTGTGTTCGGAAGTAACACGCAAACGACGCAGGCGTCTATATTCGGTACTCCGACGTCTACAACTCAAGCATCGTTATTCGGAACTCCGACGACGGCGGCCCAGAGCGGTTCTCTGTTTGGAGGCGGTGAATCTAATTTATTTGCAGCCGCAAGTATCTCGACTACAAGCGCTGCGTCTCCGACCGCCGGCGGGAATATATTTGGAGGGTCGTCGGGGTCTATTTTCGGTAGCAGCGGTACTAATGTTTTCGGAGGCAGTACAACCTTTGGTCAGTCAAATTCTAGTGCGTCTTCGATATTCGGCAGTAGAACTACGTTTGGAGATAAACCCGCTACGAATTTGTGGGGATCCGGTAACGCCGCTGGCAACACTGGCTTTGGCACAACTGGATTTGGTCAACAGACAACAACACAGGGCTCGTCGATATTTGGGAACAGTTCCGGTGGTAGCTTCAGCTCGCCTCAGTCCGGCCAAGCCTTCGGTGGCACCCAACAGACTTCGCCATTCGGTAGCGCCGAAACTAAGCCTTCAGTTTTCGGATCTCCGCAACAGCAAGCGGCTCCCGGCTTTGGTAGCCCTGCTGCATTCGGTTCTAAGCCAACATTCGGTCAGTCTGCTGGTTTTGGTTCTCCTACGGGTAGTGGCTTTGGGTCTTTCGGTGGATTCAACAAGAGCCCGAACAGCGGATTCGGAGCGCCGGCTTCGTTCGGTTCTGGAAGCGTGTTCGGCGGCACTCCGGCCTTCGGGAACACCTCCCCCGGGAAAATGTTTGGGGGAATGGCCAGTCCTATATCAGGTTTCGGGTCTACACAGTCGAACTCGACTTTCGAGAATTTAGCGACGCAGAACACCCTCACGTTCGGTAATCTAGCTCAGCAATCTGGTCAGCAACAACAGCAACAAGCTCCAAGTTTCAATACGTCTCCATCGTTCACTGGCTGGCGCGGCTAA
Protein
MESKYGPNSIDEPNLLYKLQHKTKVFNTTEKLSNRGYNLVACSSKYGIVFIAAPDGTLSVYSLKQLISNETQHTNVKLQECATHIAVSCDDELLAVAGSQSLSVFKVTDFQNQNVSPSIFMKTNVNPSTFVSALQWNPCIPDSLALAFQDGTLLACQVTTNQVKKVQTKARCICWSPKGKQLVTGNNDGTLCQYKPDLTLAKTIPAPMLPEGSSIEALAVYWISTFQFAVVYKSIGDDSRPSVTIVNAGKTGQPTCLNYEDVCFSMGSIRPWYYFLLGIAQWNIILASSSNSMEIATLASTDGSNWIQWCQTDEGRPELPLTDKKLENYPVGIAIDTCAIQQLPWGENETLPYMPSLLIVSQSGLLTIFNIVNLNRGAPQVCAPPQQFTLPASSLTSEIPGETPEEASTVSIVQPKPQVIQQAPAPQPIQQQPNPPASVPAVSNFAAQPQLPTSGLSASNVIKVPKPQFTSMFGSAATNQNSQAMPEKKSPPPIQQQQLQPLSQPKPPAAANQTIHQPQPKAAVAPTPQSPQIQENAALKEEQERINKMKANQELKNMLVKEVNDFQMELYKFMVKTRETQVKLQRDIESISANFNLTSLDSEQLKKDCSLEDLRGAIIQLKLELVRTCALVAEARTHANTKDLQQWTQADPLTIKKVASVKKLAYYVRNQLEQAQKALDYKWNEIVENDPNAKQGKYMIRPRLDDVYQPLVKQQEILSRQQTVLRNLRNALKECDILPLSKSPSLLRSTPFRNKDPLSKLTKNILNMSIEPETKTKKPLLTPQKYDALRDMLSNHKIVKIKPVDIEMGHHLATMRSKYEKSMQEKAQQATSAEKYVNKEVQVKIEPVEESVPLKDVIKAEPKMETKQFTETVAPFSPIQSKPSVPGLQNVTRTLFTEPKPEEPRVRIPVESFNFTGVCYAPPPFSYTSPVPNMSSNQTPNNDLKQFMGQKICSPISPFSNQPATAESLVPANKSTANLGLSQNSLSSSAQTQPVVFEPKPVTVASVKSSETGEPEGAAKPADSKKVNKPITNLFGMKPTTPFAPTISNVPDVLKSHQEVPNTEVRAVVKHNENAIEKPKENIAAKVNDESKVVQKIAEKENVPKTFVPQIVKPSPLIPVVQPVATSSNVLTTQTIPIKLEMKSETAKQPDTPATSSTTSIFSAVNESSKLIAASTTSPIQPKPDVPTKDELSTETNTASPATTSAVSIFGTAVASQPKTTASSSIFSTATPFSVTTQNSIFGGSATGSIFGTPPATTSESPKPLVLSAPKPVTSVFGTPVPVSTAVPSASVTATSTMAATTTSTAAATTSSTVAFASATSSVFSASATTQSSTLSPTTASSIFGTSAVTTQASAFGTPTTTASVFTPTTSAPSLFGTATTTTQSVFGSAASDTQASSIFGAAANQSSVFGQPSTQASVFGTPTSAAPAAAFGSPSQTTQTSLFGTATPTTSASVFGAQTTQPSLFGSPTQTSQASVFGTPSQNKASVFGTPAVTQPSVFGSSTQPAQTSVFGSNTQTTQASIFGTPTSTTQASLFGTPTTAAQSGSLFGGGESNLFAAASISTTSAASPTAGGNIFGGSSGSIFGSSGTNVFGGSTTFGQSNSSASSIFGSRTTFGDKPATNLWGSGNAAGNTGFGTTGFGQQTTTQGSSIFGNSSGGSFSSPQSGQAFGGTQQTSPFGSAETKPSVFGSPQQQAAPGFGSPAAFGSKPTFGQSAGFGSPTGSGFGSFGGFNKSPNSGFGAPASFGSGSVFGGTPAFGNTSPGKMFGGMASPISGFGSTQSNSTFENLATQNTLTFGNLAQQSGQQQQQQAPSFNTSPSFTGWRG

Summary

Uniprot
H9JC04   A0A2H1WEJ3  
Pubmed
19121390   
EMBL
BABH01014675    BABH01014676    BABH01014677    BABH01014678    BABH01014679    ODYU01008016    + More
SOQ51272.1   
Proteomes
UP000005204   
PRIDE
H9JC04   
Pfam
PF13634   Nucleoporin_FG
Interpro
IPR025574   Nucleoporin_FG_rpt        + More
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR037686   Nup159/Nup146       
Gene 3D
2.130.10.10    
ProteinModelPortal
H9JC04   A0A2H1WEJ3  
PDB
2OIT     E-value=8.00939e-44,     Score=452

Ontologies

KEGG
101737269    K14317 nuclear pore complex protein Nup214 | (RefSeq) nuclear pore complex protein Nup214
PATHWAY
03013    RNA transport - Bombyx mori (domestic silkworm)
GO
GO:0005515   GO:0003677   GO:0006355   GO:0006415   GO:0016021   GO:0006418   GO:0003723   GO:0046872   GO:0003824  
PANTHER
PTHR21243:SF14  

Topology

Length:
1826
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.501910000000002
Exp number, first 60 AAs:
0.33696
Total prob of N-in:
0.01909
outside
1  -  1826
 
 

Population Genetic Test Statistics

Pi
273.221059
Theta
2.725688
Tajima's D
0.202655
CLR
0.427003
CSRT
0.462226888655567
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号