Gene

KWMTBOMO10366

Pre Gene Modal

BGIBMGA007058

Annotation

putative_tubulin_polyglutamylase_TTLL1_[Papilio_machaon]

Location

Bomo_Chr17(+):8638444-8639780      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.683 Nuclear   Reliability : 1.978

CDS

ATGGAAAAGGGAAAAGTAACTTATTGCACAGATTTGGAGAAATCTGTGATCATCAGCAACTTCGAGCGACGAGGATGGGTCCAGGTAGGCCCAGAAGATGAATGGAATTTTTACTGGTCTTTCACTCAAAACTGCCGCAACATTTTTAGTATCGAAAGTGGGTACAGAATGAACGACAACCAAATGATAAATCACTTCCCTAACCACTACGAGCTGTCTCGTAAAGATTTATTAGTAAAAAATATCAAAAGATACAGAAAAGAACTTGAAAGGGAAGGCAATCCTTTAGCTGAAAAAACGGATTTGGTGCTCCCAAGCGGGCAAGTTGTCTCGCGATATTTACATTTAGATTTTATACCAGTCACTTACGTTTTGCCTGCCGACTACAATATGTTTGTCGAAGAATACAGAAAGTCTCCGCAAAGTACGTGGATCATGAAGCCTTGTGGAAAATCTCAAGGGGCGGGAATTTTCTTGATCAATAAACTTTCCAAACTGAAAAAGTGGTCGCGGGAAGCGAAAACTCCTTTCCATCCTCAACTCAGCAACAAAGAAAGTTATGTAATATCTCGATACATCGACAACCCTCTTTTGATTGGCGGCAAGAAATTTGATCTGAGACTTTATGTACTCGTGACATCGTTTCGACCACTGAAAGCGTATCTGTTTCGACATGGCTTCTGCAGATTTTGTACAGTGAAATATGACACTAGCGTTACTGAACTCGATAACATGTACGTGCATTTAACGAATGTCAGCGTTCAAAAACACGGAGGGGATTACAACAGCTTACACGGCGGGAAAATGAGTATTCAGAATTTTCGCTTTTATTTAGAAGGGACTAGAGGACGGGCTGTTACCGAAAAGCTATTTGCAGACATGCAATGGTTGATTGTTCATTCACTCAAAGCGGTAGCTCCCGTAATGGCCAATGATAGGCATTGCTTCGAATGCTATGGCTACGACATTATAATTGACAATACTCTGAAACCTTGGCTAGTGGAAGTAAACGCTTCGCCATCTCTGCAATCGACGACTCATAATGACAGAATACTAAAGTACAAATTGATTGATAATATTTTCTCAGTTGTCGTGCCCCCTGACGGGATTCCCGATGCTAGATGGAATAAAATACCTACTACCGAAGCGCTTGGAGACTTTGATCTACTAATCGATGAAGACCTTATGGAAAAAGAAGACATGAATACGCGTTTTTGTAAATTTCAACGAGTCAAGCAATAA

Protein

MEKGKVTYCTDLEKSVIISNFERRGWVQVGPEDEWNFYWSFTQNCRNIFSIESGYRMNDNQMINHFPNHYELSRKDLLVKNIKRYRKELEREGNPLAEKTDLVLPSGQVVSRYLHLDFIPVTYVLPADYNMFVEEYRKSPQSTWIMKPCGKSQGAGIFLINKLSKLKKWSREAKTPFHPQLSNKESYVISRYIDNPLLIGGKKFDLRLYVLVTSFRPLKAYLFRHGFCRFCTVKYDTSVTELDNMYVHLTNVSVQKHGGDYNSLHGGKMSIQNFRFYLEGTRGRAVTEKLFADMQWLIVHSLKAVAPVMANDRHCFECYGYDIIIDNTLKPWLVEVNASPSLQSTTHNDRILKYKLIDNIFSVVVPPDGIPDARWNKIPTTEALGDFDLLIDEDLMEKEDMNTRFCKFQRVKQ

Uniprot

H9JC13   A0A2A4K671   A0A2H1VZ45   A0A212FK33   A0A0N1IA08   A0A0L7KNZ4   + More
A0A194QBN7   A0A0N1PIY6   H9JC14   A0A2A4K6G2   A0A194QCX3   A0A0L7L178   A0A2H1VYQ9   A0A1I8NH69   A0A336M6P3   A0A336KXR1   A0A182YE16   A0A232ETA9   A0A1I8PJ47   A0A0L0C9N8   A0A182R930   K7IYY3   A0A0M8ZWN3   A0A151I174   E2B7T0   A0A158NKC0   A0A0A1XII5   A0A182W857   W8C190   A0A0K8WGN2   A0A151WS30   A0A034WF49   A0A182JV02   A0A182P7N6   W5JMM9   A0A182QW01   A0A182IM81   A0A1S4H3P2   A0A182HIW0   A0A1B0GHE9   A0A084VJW0   Q17AY7   A0A182NQ30   Q7QDP1   A0A182GLP6   A0A3F2Z218   A0A182FZS6   A0A1A9W342   A0A195EIM7   A0A2A3E6H8   B0WZV2   A0A087ZY45   A0A310SCC6   A0A2J7PMN2   A0A195FBA5   A0A1A9VBY4   A0A1A9YDG0   A0A1B0G1Z0   B4KXA5   B3M9J3   A0A1W4VNM4   B4PIA7   B4MMY1   B4QR13   A0A0M3QVV4   B3NG56   Q9VZ97   Q29EA9   B4HU95   A0A1B6K0G9   B4H1S0   A0A1B6EK26   A0A3B0J736   B4IZ74   A0A1A9WDU0   B4MFZ2   D2A295   A0A2A4K5S3   A0A0L7KP30   A0A154P731   A0A182LGU7   U4U8A8   N6TVJ1   A0A026WFF6   A0A2H1VYQ7   A0A1W4XH13   A0A1J1HTR7   A0A067RI56   A0A1Y1LX05   A0A2R7VTP4   A0A1B0DCH7   A0A224XPD9   A0A1B0FAE4   A0A3L8DKS2   E0VPT2   A0A2P8XK43   H9JC09   A0A2S2NY11   J9JN31   A0A2H8TGB9  

Pubmed

19121390    22118469    26354079    26227816    25315136    25244985    + More
28648823    26108605    20075255    20798317    21347285    25830018    24495485    25348373    20920257    23761445    12364791    24438588    17510324    26483478    17994087    17550304    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    15632085    18057021    18362917    19820115    20966253    23537049    24508170    24845553    28004739    30249741    20566863    29403074   

EMBL

BABH01014644    NWSH01000129    PCG79263.1    ODYU01005278    SOQ45976.1    AGBW02008157    + More
OWR54091.1    KQ459998    KPJ18501.1    JTDY01007972    KOB64825.1    KQ459232    KPJ02829.1    KPJ18500.1    BABH01014657    PCG79262.1    KPJ02830.1    JTDY01003629    KOB69242.1    SOQ45979.1    UFQS01000205    UFQT01000205    SSX01318.1    SSX21698.1    UFQS01001174    UFQT01001174    SSX09405.1    SSX29307.1    NNAY01002297    OXU21595.1    JRES01000720    KNC28966.1    KQ435847    KOX71133.1    KQ976588    KYM79691.1    GL446209    EFN88223.1    ADTU01018768    GBXI01003562    JAD10730.1    GAMC01003642    JAC02914.1    GDHF01002077    JAI50237.1    KQ982782    KYQ50719.1    GAKP01006544    JAC52408.1    ADMH02000671    ETN65381.1    AXCN02002267    AAAB01008849    APCN01006664    APCN01006665    AJWK01004543    ATLV01013905    KE524908    KFB38254.1    CH477328    EAT43427.1    EAA07118.4    JXUM01016072    JXUM01016073    KQ560449    KXJ82367.1    KQ978881    KYN27752.1    KZ288369    PBC26769.1    DS232218    EDS37777.1    KQ769179    OAD52913.1    NEVH01023972    PNF17591.1    KQ981693    KYN37698.1    CCAG010017015    CH933809    EDW17563.1    CH902618    EDV38999.2    CM000159    EDW93449.1    CH963847    EDW73537.1    CM000363    CM002912    EDX09250.1    KMY97661.1    CP012525    ALC43049.1    CH954178    EDV50957.1    AE014296    BT025844    AAF47928.1    ABF85744.1    CH379070    EAL30152.2    CH480817    EDW50516.1    GECU01002761    JAT04946.1    CH479203    EDW30272.1    GECZ01031518    JAS38251.1    OUUW01000002    SPP77575.1    CH917938    CH916366    EDV90440.1    EDV95596.1    CH940669    EDW58253.1    KRF78201.1    KQ971338    EFA02053.1    PCG79264.1    KOB64826.1    KQ434829    KZC07739.1    KB632081    ERL88578.1    APGK01053111    APGK01053112    KB741221    ENN72416.1    KK107238    EZA54792.1    SOQ45975.1    CVRI01000020    CRK91387.1    KK852498    KDR22678.1    GEZM01044876    JAV78072.1    KK854082    PTY10893.1    AJVK01005093    AJVK01005094    GFTR01006004    JAW10422.1    CCAG010017010    QOIP01000007    RLU21017.1    DS235371    EEB15388.1    PYGN01001874    PSN32376.1    GGMR01009451    MBY22070.1    ABLF02036147    GFXV01001361    MBW13166.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000037510    UP000053268    + More
UP000095301    UP000076408    UP000215335    UP000095300    UP000037069    UP000075900    UP000002358    UP000053105    UP000078540    UP000008237    UP000005205    UP000075920    UP000075809    UP000075881    UP000075885    UP000000673    UP000075886    UP000075880    UP000075840    UP000092461    UP000030765    UP000008820    UP000075884    UP000007062    UP000069940    UP000249989    UP000076407    UP000069272    UP000091820    UP000078492    UP000242457    UP000002320    UP000005203    UP000235965    UP000078541    UP000078200    UP000092443    UP000092444    UP000009192    UP000007801    UP000192221    UP000002282    UP000007798    UP000000304    UP000092553    UP000008711    UP000000803    UP000001819    UP000001292    UP000008744    UP000268350    UP000001070    UP000008792    UP000007266    UP000076502    UP000075882    UP000030742    UP000019118    UP000053097    UP000192223    UP000183832    UP000027135    UP000092462    UP000279307    UP000009046    UP000245037    UP000007819   

PRIDE

H9JC13    H9JC14    Q9VZ97    H9JC09   

Pfam

PF03133   TTL        + More
PF02178   AT_hook
PF00439   Bromodomain
PF02939   UcrQ
PF00276   Ribosomal_L23

Interpro

IPR027750   TTLL1        + More
IPR013815   ATP_grasp_subdomain_1       
IPR004344   TTL/TTLL_fam       
IPR036427   Bromodomain-like_sf       
IPR018359   Bromodomain_CS       
IPR017956   AT_hook_DNA-bd_motif       
IPR001487   Bromodomain       
IPR006212   Furin_repeat       
IPR036642   Cyt_bc1_su8_sf       
IPR004205   Cyt_bc1_su8       
IPR013025   Ribosomal_L25/23       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR012678   Ribosomal_L23/L15e_core_dom_sf       

SUPFAM

SSF47370   SSF47370        + More
SSF81508   SSF81508       
SSF54189   SSF54189       

Gene 3D

3.30.1490.20     1.20.920.10     1.20.5.210     3.30.70.330    

CDD

cd00064  FU

ProteinModelPortal

H9JC13   A0A2A4K671   A0A2H1VZ45   A0A212FK33   A0A0N1IA08   A0A0L7KNZ4   + More
A0A194QBN7   A0A0N1PIY6   H9JC14   A0A2A4K6G2   A0A194QCX3   A0A0L7L178   A0A2H1VYQ9   A0A1I8NH69   A0A336M6P3   A0A336KXR1   A0A182YE16   A0A232ETA9   A0A1I8PJ47   A0A0L0C9N8   A0A182R930   K7IYY3   A0A0M8ZWN3   A0A151I174   E2B7T0   A0A158NKC0   A0A0A1XII5   A0A182W857   W8C190   A0A0K8WGN2   A0A151WS30   A0A034WF49   A0A182JV02   A0A182P7N6   W5JMM9   A0A182QW01   A0A182IM81   A0A1S4H3P2   A0A182HIW0   A0A1B0GHE9   A0A084VJW0   Q17AY7   A0A182NQ30   Q7QDP1   A0A182GLP6   A0A3F2Z218   A0A182FZS6   A0A1A9W342   A0A195EIM7   A0A2A3E6H8   B0WZV2   A0A087ZY45   A0A310SCC6   A0A2J7PMN2   A0A195FBA5   A0A1A9VBY4   A0A1A9YDG0   A0A1B0G1Z0   B4KXA5   B3M9J3   A0A1W4VNM4   B4PIA7   B4MMY1   B4QR13   A0A0M3QVV4   B3NG56   Q9VZ97   Q29EA9   B4HU95   A0A1B6K0G9   B4H1S0   A0A1B6EK26   A0A3B0J736   B4IZ74   A0A1A9WDU0   B4MFZ2   D2A295   A0A2A4K5S3   A0A0L7KP30   A0A154P731   A0A182LGU7   U4U8A8   N6TVJ1   A0A026WFF6   A0A2H1VYQ7   A0A1W4XH13   A0A1J1HTR7   A0A067RI56   A0A1Y1LX05   A0A2R7VTP4   A0A1B0DCH7   A0A224XPD9   A0A1B0FAE4   A0A3L8DKS2   E0VPT2   A0A2P8XK43   H9JC09   A0A2S2NY11   J9JN31   A0A2H8TGB9  

PDB

4YLS     E-value=1.75079e-34,     Score=365

KEGG

101736733    no KO assigned | (RefSeq) probable tubulin polyglutamylase TTLL1 pseudogene

GO

GO:0005524   GO:0018095   GO:0016874   GO:0003677   GO:0016021   GO:0008121   GO:0070735   GO:0018094   GO:0005840   GO:0003735   GO:0006412   GO:0006464   GO:0008417   GO:0016020   GO:0005515   GO:0006415   GO:0006418   GO:0003723   GO:0046872   GO:0003824  

PANTHER

PTHR12241:SF31  

Length:

413

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02302

Exp number, first 60 AAs:

0

Total prob of N-in:

0.05222

outside

1  -  413

 

 

Pi

17.018707

Theta

62.234158

Tajima's D

-2.459191

CLR

479.110804

CSRT

0.000899955002249887

Interpretation

Uncertain