SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10366
Pre Gene Modal
BGIBMGA007058
Annotation
putative_tubulin_polyglutamylase_TTLL1_[Papilio_machaon]
Location in the cell
Cytoplasmic   Reliability : 1.683 Nuclear   Reliability : 1.978
 

Sequence

CDS
ATGGAAAAGGGAAAAGTAACTTATTGCACAGATTTGGAGAAATCTGTGATCATCAGCAACTTCGAGCGACGAGGATGGGTCCAGGTAGGCCCAGAAGATGAATGGAATTTTTACTGGTCTTTCACTCAAAACTGCCGCAACATTTTTAGTATCGAAAGTGGGTACAGAATGAACGACAACCAAATGATAAATCACTTCCCTAACCACTACGAGCTGTCTCGTAAAGATTTATTAGTAAAAAATATCAAAAGATACAGAAAAGAACTTGAAAGGGAAGGCAATCCTTTAGCTGAAAAAACGGATTTGGTGCTCCCAAGCGGGCAAGTTGTCTCGCGATATTTACATTTAGATTTTATACCAGTCACTTACGTTTTGCCTGCCGACTACAATATGTTTGTCGAAGAATACAGAAAGTCTCCGCAAAGTACGTGGATCATGAAGCCTTGTGGAAAATCTCAAGGGGCGGGAATTTTCTTGATCAATAAACTTTCCAAACTGAAAAAGTGGTCGCGGGAAGCGAAAACTCCTTTCCATCCTCAACTCAGCAACAAAGAAAGTTATGTAATATCTCGATACATCGACAACCCTCTTTTGATTGGCGGCAAGAAATTTGATCTGAGACTTTATGTACTCGTGACATCGTTTCGACCACTGAAAGCGTATCTGTTTCGACATGGCTTCTGCAGATTTTGTACAGTGAAATATGACACTAGCGTTACTGAACTCGATAACATGTACGTGCATTTAACGAATGTCAGCGTTCAAAAACACGGAGGGGATTACAACAGCTTACACGGCGGGAAAATGAGTATTCAGAATTTTCGCTTTTATTTAGAAGGGACTAGAGGACGGGCTGTTACCGAAAAGCTATTTGCAGACATGCAATGGTTGATTGTTCATTCACTCAAAGCGGTAGCTCCCGTAATGGCCAATGATAGGCATTGCTTCGAATGCTATGGCTACGACATTATAATTGACAATACTCTGAAACCTTGGCTAGTGGAAGTAAACGCTTCGCCATCTCTGCAATCGACGACTCATAATGACAGAATACTAAAGTACAAATTGATTGATAATATTTTCTCAGTTGTCGTGCCCCCTGACGGGATTCCCGATGCTAGATGGAATAAAATACCTACTACCGAAGCGCTTGGAGACTTTGATCTACTAATCGATGAAGACCTTATGGAAAAAGAAGACATGAATACGCGTTTTTGTAAATTTCAACGAGTCAAGCAATAA
Protein
MEKGKVTYCTDLEKSVIISNFERRGWVQVGPEDEWNFYWSFTQNCRNIFSIESGYRMNDNQMINHFPNHYELSRKDLLVKNIKRYRKELEREGNPLAEKTDLVLPSGQVVSRYLHLDFIPVTYVLPADYNMFVEEYRKSPQSTWIMKPCGKSQGAGIFLINKLSKLKKWSREAKTPFHPQLSNKESYVISRYIDNPLLIGGKKFDLRLYVLVTSFRPLKAYLFRHGFCRFCTVKYDTSVTELDNMYVHLTNVSVQKHGGDYNSLHGGKMSIQNFRFYLEGTRGRAVTEKLFADMQWLIVHSLKAVAPVMANDRHCFECYGYDIIIDNTLKPWLVEVNASPSLQSTTHNDRILKYKLIDNIFSVVVPPDGIPDARWNKIPTTEALGDFDLLIDEDLMEKEDMNTRFCKFQRVKQ

Summary

EMBL
BABH01014644    NWSH01000129    PCG79263.1    ODYU01005278    SOQ45976.1    AGBW02008157    + More
OWR54091.1    KQ459998    KPJ18501.1    JTDY01007972    KOB64825.1    KQ459232    KPJ02829.1    KPJ18500.1    BABH01014657    PCG79262.1    KPJ02830.1    JTDY01003629    KOB69242.1    SOQ45979.1    UFQS01000205    UFQT01000205    SSX01318.1    SSX21698.1    UFQS01001174    UFQT01001174    SSX09405.1    SSX29307.1    NNAY01002297    OXU21595.1    JRES01000720    KNC28966.1    KQ435847    KOX71133.1    KQ976588    KYM79691.1    GL446209    EFN88223.1    ADTU01018768    GBXI01003562    JAD10730.1    GAMC01003642    JAC02914.1    GDHF01002077    JAI50237.1    KQ982782    KYQ50719.1    GAKP01006544    JAC52408.1    ADMH02000671    ETN65381.1    AXCN02002267    AAAB01008849    APCN01006664    APCN01006665    AJWK01004543    ATLV01013905    KE524908    KFB38254.1    CH477328    EAT43427.1    EAA07118.4    JXUM01016072    JXUM01016073    KQ560449    KXJ82367.1    KQ978881    KYN27752.1    KZ288369    PBC26769.1    DS232218    EDS37777.1    KQ769179    OAD52913.1    NEVH01023972    PNF17591.1    KQ981693    KYN37698.1    CCAG010017015    CH933809    EDW17563.1    CH902618    EDV38999.2    CM000159    EDW93449.1    CH963847    EDW73537.1    CM000363    CM002912    EDX09250.1    KMY97661.1    CP012525    ALC43049.1    CH954178    EDV50957.1    AE014296    BT025844    AAF47928.1    ABF85744.1    CH379070    EAL30152.2    CH480817    EDW50516.1    GECU01002761    JAT04946.1    CH479203    EDW30272.1    GECZ01031518    JAS38251.1    OUUW01000002    SPP77575.1    CH917938    CH916366    EDV90440.1    EDV95596.1    CH940669    EDW58253.1    KRF78201.1    KQ971338    EFA02053.1    PCG79264.1    KOB64826.1    KQ434829    KZC07739.1    KB632081    ERL88578.1    APGK01053111    APGK01053112    KB741221    ENN72416.1    KK107238    EZA54792.1    SOQ45975.1    CVRI01000020    CRK91387.1    KK852498    KDR22678.1    GEZM01044876    JAV78072.1    KK854082    PTY10893.1    AJVK01005093    AJVK01005094    GFTR01006004    JAW10422.1    CCAG010017010    QOIP01000007    RLU21017.1    DS235371    EEB15388.1    PYGN01001874    PSN32376.1    GGMR01009451    MBY22070.1    ABLF02036147    GFXV01001361    MBW13166.1   
Pfam
PF03133   TTL        + More
PF02178   AT_hook
PF00439   Bromodomain
PF02939   UcrQ
PF00276   Ribosomal_L23
Interpro
IPR027750   TTLL1        + More
IPR013815   ATP_grasp_subdomain_1       
IPR004344   TTL/TTLL_fam       
IPR036427   Bromodomain-like_sf       
IPR018359   Bromodomain_CS       
IPR017956   AT_hook_DNA-bd_motif       
IPR001487   Bromodomain       
IPR006212   Furin_repeat       
IPR036642   Cyt_bc1_su8_sf       
IPR004205   Cyt_bc1_su8       
IPR013025   Ribosomal_L25/23       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR012678   Ribosomal_L23/L15e_core_dom_sf       
SUPFAM
SSF47370   SSF47370        + More
SSF81508   SSF81508       
SSF54189   SSF54189       
PDB
4YLS     E-value=1.75079e-34,     Score=365

Ontologies

Topology

Length:
413
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02302
Exp number, first 60 AAs:
0
Total prob of N-in:
0.05222
outside
1  -  413
 
 

Population Genetic Test Statistics

Pi
17.018707
Theta
62.234158
Tajima's D
-2.459191
CLR
479.110804
CSRT
0.000899955002249887
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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