Gene

KWMTBOMO10365

Pre Gene Modal

BGIBMGA007056

Annotation

PREDICTED:_tetratricopeptide_repeat_protein_25-like_[Amyelois_transitella]

Location

Bomo_Chr17(+):8520524-8521942      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.315 Nuclear   Reliability : 1.475

CDS

ATGGTCATGACTGACGACCACTACCGCTCTGATAAGGAATCTCGCGCTTCCGGTCAGCGAGTTTGGCTTATAAATGCAACATTCCTATTGGCCCGCTGTCACTTGCTGCAGAATAATAGGCCCGAAGCTCGAGCAGTGCTGCTTGAAGGGTCTAGCTTAGCTCGTTCATATGGTTTCAGCGATGTAGCCGCTTTCTTTGACACGTGTGTCAACGTATCATTGGAAGGCGAAGTGGCGTTTTCGGAGGCACCCCTAGAGAAAAGGGAAAAAGATATGGTCGGTTTGATGCAAGACGCTGATCTGAAGGCTGCCGCTGAACACCTCTTCAGGAGAATGTCCGTTATTCCTGCTTCCCGGCGCTTCTCGATAATGCCAGGAATGCATGCTGACGAGACACCTCCGTCGGCAGCCGGTCGCCGCATGTCTATCATACCTCGGAACCAACAGCCCACGAAAATCGCACGGAGACTGCAAAATCCTTTAGGATTACAAACCTTCGATGTCTGA

Protein

MVMTDDHYRSDKESRASGQRVWLINATFLLARCHLLQNNRPEARAVLLEGSSLARSYGFSDVAAFFDTCVNVSLEGEVAFSEAPLEKREKDMVGLMQDADLKAAAEHLFRRMSVIPASRRFSIMPGMHADETPPSAAGRRMSIIPRNQQPTKIARRLQNPLGLQTFDV

Uniprot

H9JC11   A0A0N0P9I1   A0A194QBB0   A0A0N1IPW1   A0A212FK56   A0A2A4K4T4   + More
N6TQL8   D2A2M8   A0A0L7R1S1   A0A0M9A3N5   A0A195FSA0   A0A0L7K4M2   A0A154P325   A0A151WV16   A0A194PN99   U4U9B4   F4WAC2   A0A195CU39   A0A087ZZW3   A0A2A3EQJ1   A0A194PMJ7   N6TRT5   A0A195E4A3   A0A151I1S9   A0A158NL91   A0A2P8YE78   A0A212FAI4   A0A194R4J5   E2AQ16   A0A0K8SPJ1   A0A0A9WKE7   A0A194R0K7   E0VQD2   A0A2W1BST4   A0A0J7NZX5   A0A2A4K0Z3   A0A194QZ96   A0A232ERZ9   A0A1B6LBS6   A0A3L8DJF2   A0A026WQ21   K7JTX5   A0A1B6GWY4   A0A194PSW0   A0A1B6JPQ7  

Pubmed

19121390    26354079    22118469    23537049    18362917    19820115    + More
26227816    21719571    21347285    29403074    20798317    25401762    20566863    28756777    28648823    30249741    24508170    20075255   

EMBL

BABH01014627    KQ459388    KPJ01121.1    KQ459232    KPJ02828.1    KQ459998    + More
KPJ18502.1    AGBW02008157    OWR54089.1    NWSH01000129    PCG79265.1    APGK01024667    KB740558    KB632357    ENN80353.1    ERL93466.1    KQ971338    EFA01482.1    KQ414667    KOC64783.1    KQ435767    KOX75303.1    KQ981281    KYN43316.1    JTDY01011566    KOB55545.1    KQ434809    KZC06271.1    KQ982718    KYQ51694.1    KQ459600    KPI94214.1    KB632239    ERL90504.1    GL888048    EGI68805.1    KQ977306    KYN03649.1    KZ288194    PBC33977.1    KPI94213.1    APGK01054343    APGK01054344    KB741248    ENN71975.1    KQ979701    KYN19684.1    KQ976551    KYM80850.1    ADTU01019003    ADTU01019004    PYGN01000666    PSN42570.1    AGBW02009472    OWR50741.1    KQ460930    KPJ10781.1    GL441649    EFN64473.1    GBRD01010656    JAG55168.1    GBHO01035713    JAG07891.1    KPJ10780.1    DS235418    EEB15588.1    KZ149930    PZC77401.1    LBMM01000623    KMQ97955.1    NWSH01000258    PCG77941.1    KPJ10782.1    NNAY01002549    OXU21076.1    GEBQ01018856    JAT21121.1    QOIP01000007    RLU20069.1    KK107152    EZA57199.1    AAZX01006212    GECZ01002821    JAS66948.1    KPI94215.1    GECU01006507    JAT01200.1   

Proteomes

UP000005204    UP000053268    UP000053240    UP000007151    UP000218220    UP000019118    + More
UP000030742    UP000007266    UP000053825    UP000053105    UP000078541    UP000037510    UP000076502    UP000075809    UP000007755    UP000078542    UP000005203    UP000242457    UP000078492    UP000078540    UP000005205    UP000245037    UP000000311    UP000009046    UP000036403    UP000215335    UP000279307    UP000053097    UP000002358   

PRIDE

H9JC11   

Pfam

PF00439   Bromodomain        + More
PF12024   DUF3512
PF13873   Myb_DNA-bind_5

Interpro

IPR013026   TPR-contain_dom        + More
IPR019734   TPR_repeat       
IPR011990   TPR-like_helical_dom_sf       
IPR001487   Bromodomain       
IPR021900   DUF3512       
IPR036427   Bromodomain-like_sf       
IPR028002   Myb_DNA-bind_5       
IPR040111   TTC25       

SUPFAM

SSF48452   SSF48452        + More
SSF47370   SSF47370       

Gene 3D

1.25.40.10     1.20.920.10    

ProteinModelPortal

H9JC11   A0A0N0P9I1   A0A194QBB0   A0A0N1IPW1   A0A212FK56   A0A2A4K4T4   + More
N6TQL8   D2A2M8   A0A0L7R1S1   A0A0M9A3N5   A0A195FSA0   A0A0L7K4M2   A0A154P325   A0A151WV16   A0A194PN99   U4U9B4   F4WAC2   A0A195CU39   A0A087ZZW3   A0A2A3EQJ1   A0A194PMJ7   N6TRT5   A0A195E4A3   A0A151I1S9   A0A158NL91   A0A2P8YE78   A0A212FAI4   A0A194R4J5   E2AQ16   A0A0K8SPJ1   A0A0A9WKE7   A0A194R0K7   E0VQD2   A0A2W1BST4   A0A0J7NZX5   A0A2A4K0Z3   A0A194QZ96   A0A232ERZ9   A0A1B6LBS6   A0A3L8DJF2   A0A026WQ21   K7JTX5   A0A1B6GWY4   A0A194PSW0   A0A1B6JPQ7  

KEGG

101736591    no KO assigned | (RefSeq) uncharacterized LOC101736591

GO

GO:0016021  

PANTHER

PTHR23040  

Length:

168

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.43504

Exp number, first 60 AAs:

0.43288

Total prob of N-in:

0.32823

outside

1  -  168

 

 

Pi

164.898372

Theta

192.398879

Tajima's D

-0.506756

CLR

416.841984

CSRT

0.246787660616969

Interpretation

Uncertain