SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10362
Pre Gene Modal
BGIBMGA007055
Annotation
Uncharacterized_protein_OBRU01_26355_[Operophtera_brumata]
Full name
Dynein intermediate chain 3, ciliary       + More
Dynein intermediate chain 2, axonemal      
Alternative Name
Axonemal dynein intermediate chain 2
Location in the cell
Nuclear   Reliability : 3.435
 

Sequence

CDS
ATGGATCTATCACGCCCATATGTGAATTTTCGAAAGCAGTTTGGAAAGCAGCCAAGGTTTTGCGAAGTGCCAGTTCATCTCATAGATTCTATCGCTCCTAATAAAGGTGAGCAAAGAAAATATTGTTTACGAAATACAGTTAATCAAGAAGTGCAAACGATTATTTCAAAATCCGAAAATGAGGTGAACACGCATCGAATCACGTCTCAAGAACAAGGCGTGAATCATGTTGAAGGAGGCTGGCCAAAAGAAATTAATTTCTTAGACGAGGAAATTACATCAAGATATCGACACCGTGTTGAACGAGAAGACACTTATGTTGAAGTCATTCTAAATCAGTATGAGAACTTCGAACATTATCTTAAGCAAAATAATGCTATAGAAATGTACGAAATGTTTTACAAAAAAATGCCGCCCACTCAACTAATAGAAAAATCGGCTTTGCGAATCAATAGTCTCTTAAAAGACACAGATAATCGCCCAATAGCATGTATTGGATGGTCTTGTGAAGATAATCCCAAAATAGTTGTGGCGTACTGTAATAAAAAATATCCAATTCGTGGTCCCATTAATTCAAATCTATCGTGTTATGTGTGGGATGTGGAGTATCCCCGTGCTCCAAATGATGAGTTATATCCGCCTTCACCATGTTGGGAAATAGCATGTTCACCCATTAATCCATCCGTGGTAGTTGGTGGTTTAGAAGACGGTACTGTTTGTATATTCGATCTTAGGTCTAATAAAAATGCTGATGCGAAAAGCCCAATGCACCTGGCCCACCGGGATCCGGTTTCTGCACTTGTATACATACAGTCTAGGCAGAACAACGAATTTTTTAGTGGGTCTACTGATGGTTCTTGTAAATGGTGGGATATCCGTCAGTTATCGAATCCAACTGAAACACTCATAATGTCCGTAAATGCTGTTCAGGGCGAACAAGCAACGTTAGCTAACTCTGAAGGTGTTTACTCTTTGCAATATGATAGGGCGTTTCCAACGAGATTCCTCTGTGGTACTGACACAGGTTTGGTTATTAACGTTAATAGAAAAGGAAGAACTCATCGAGAAATGCTGAGCGCAGTATTTCATGCACATAAAGGACCCGTTAAAGCAGTTCATCGCAGCCAATGTACATCAAAAATGTTTCTAACTTGTGGTGACTGGACGGTTCACATTTGGAGCGAGGATATCTTAAGTTCCCCGATTGTCTCAGGTATTCCACATCGCCACCAAATAACCGATGCTGTTTGGGCTCCACAAAGATTTTCGAGCTTCATGACCGTTAGTGTTGATGGCAAATTCCGGTATTGGGATATCTTACGTAAATATCGTGAGCCTGTCGCTGTGTTACCAGTATCAAAAAATCCACTTTTGAAGATAAAACCGAATGAAGAAGGTCGTTTGATAGCAATAGGTGATGGAAAAGGAATGATTTATATTTTATCTTTGTCTGAAAATCTAATTATACCAGGTGATCGAGATAGGCAGTTAATGACACAAACTTATGATCGCGAGACTCGAAGAGAACACATTTTAGAGGCCCGTGTTAAAGAAATTCGTGTGAAATTAAAATCAGATGACAAAGCAGCTCAAGCGGCTACTAAAGCAAGTCCAGCTGGTGACCTGGAAAGCCTGCTAAAAACCACCGAAGAAGAATACAGAAGGGTTGTATCTGAAGAGCTACGACGTGCCGGAATTACACCGGTATCTTCAAGAGGTCGAGGTGCTGAAATGCGAAAACGATAA
Protein
MDLSRPYVNFRKQFGKQPRFCEVPVHLIDSIAPNKGEQRKYCLRNTVNQEVQTIISKSENEVNTHRITSQEQGVNHVEGGWPKEINFLDEEITSRYRHRVEREDTYVEVILNQYENFEHYLKQNNAIEMYEMFYKKMPPTQLIEKSALRINSLLKDTDNRPIACIGWSCEDNPKIVVAYCNKKYPIRGPINSNLSCYVWDVEYPRAPNDELYPPSPCWEIACSPINPSVVVGGLEDGTVCIFDLRSNKNADAKSPMHLAHRDPVSALVYIQSRQNNEFFSGSTDGSCKWWDIRQLSNPTETLIMSVNAVQGEQATLANSEGVYSLQYDRAFPTRFLCGTDTGLVINVNRKGRTHREMLSAVFHAHKGPVKAVHRSQCTSKMFLTCGDWTVHIWSEDILSSPIVSGIPHRHQITDAVWAPQRFSSFMTVSVDGKFRYWDILRKYREPVAVLPVSKNPLLKIKPNEEGRLIAIGDGKGMIYILSLSENLIIPGDRDRQLMTQTYDRETRREHILEARVKEIRVKLKSDDKAAQAATKASPAGDLESLLKTTEEEYRRVVSEELRRAGITPVSSRGRGAEMRKR

Summary

Description
Part of the dynein complex of respiratory cilia.
Subunit
Consists of at least two heavy chains (alpha and beta), three intermediate chains and several light chains.
Consists of at least two heavy chains and a number of intermediate and light chains (Probable). Interacts with DNAAF2 (By similarity). Interacts with PIH1D3 (By similarity). Interacts with HEATR2; probably involved in outer arm dynein assembly (PubMed:25232951).
Consists of at least two heavy chains and a number of intermediate and light chains (Probable). Interacts with DNAAF2 (PubMed:19052621). Interacts with PIH1D3 (PubMed:24421334). Interacts with HEATR2; probably involved in outer arm dynein assembly (By similarity).
Consists of at least two heavy chains and a number of intermediate and light chains (Probable). Interacts with DNAAF2 (By similarity). Interacts with PIH1D3 (By similarity). Interacts with HEATR2; probably involved in outer arm dynein assembly (By similarity).
Similarity
Belongs to the dynein intermediate chain family.
Keywords
Cell projection   Cilium   Cytoplasm   Cytoskeleton   Dynein   Microtubule   Motor protein   Repeat   WD repeat   Alternative splicing   Ciliopathy   Complete proteome   Kartagener syndrome   Polymorphism   Primary ciliary dyskinesia   Reference proteome  
Feature
chain  Dynein intermediate chain 3, ciliary
splice variant  In isoform 2.
sequence variant  In dbSNP:rs28725418.
EMBL
BABH01014623    JTDY01013075    KOB52197.1    ODYU01006901    SOQ49168.1    NWSH01001148    + More
PCG72394.1    AGBW02008489    OWR53236.1    NWSH01003308    PCG66587.1    KQ461155    KPJ08115.1    ODYU01000263    SOQ34731.1    KQ459232    KPJ02819.1    JTDY01001209    KOB74528.1    PCG66588.1    BABH01039084    BABH01004332    AGBW02009873    OWR49674.1    DS235206    EEB13302.1    KZ150474    PZC70746.1    NWSH01001606    PCG70721.1    ODYU01000427    SOQ35174.1    SOQ35175.1    ODYU01007193    SOQ49759.1    GECZ01001756    JAS68013.1    AGBW02008593    OWR52965.1    PZC70747.1    KK852855    KDR14924.1    KQ459606    KPI91673.1    KQ971321    EEZ99548.1    KQ461154    KPJ08451.1    KQ460883    KPJ11108.1    KQ459599    KPI94411.1    JTDY01009838    KOB62521.1    GAMS01005995    JAB17141.1    D28863    REGN01007157    RNA07086.1    APGK01055684    APGK01055685    KB741269    KB632330    ENN71438.1    ERL92589.1    AAGJ04129498    NEVH01009765    PNF32875.1    AF250288    AF253097    AF253087    AF253088    AF253089    AF260782    AF253090    AF253091    AF253092    AF253093    AF253094    AF253095    AF253096    AJ295276    AC103809    CH471099    BC039582    AL137526    EAW89149.1    BABH01011924    BABH01011925    BABH01011926    AJFE02042393    AJFE02042394    AJFE02042395    AACZ04070080    NBAG03000379    PNI32558.1    PNI32562.1    CABG01000050    CAZ37437.1    NDHI03003284    PNJ87613.1    PNJ87614.1    AEMK02000080    DQIR01296780    HDC52258.1    GEZM01091218    JAV57017.1    PNI32559.1    GEZM01091208    JAV57034.1    GEBF01005522    JAN98110.1    APAU02000059    EUB58578.1    FN317321    CAX73052.1    EF565270    AL663079    CH466558    PNJ87615.1    JSUE03017384    JSUE03017385    AQIA01028556    AQIA01028557    CM001291    EHH58313.1    KB199905    ESP03921.1    AAMC01045484    CM001268    EHH25168.1    AAKN02047293    NIVC01001203    PAA70849.1    CABZ01041060    CABZ01041061    ABLF02031050    ABLF02031054    ABLF02031062    NIVC01000187    PAA88447.1    JH880547    ELR60791.1    CM004483    OCT60412.1    NEDP02076708    OWF35787.1    BC097759    AAH97759.1    NIVC01002026    PAA61501.1    UYRS01018362    VDK33781.1    AAPE02054166    BC081920    PNI32560.1    KV893546    OON19160.1   
Interpro
IPR001680   WD40_repeat        + More
IPR017986   WD40_repeat_dom       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR036322   WD40_repeat_dom_sf       
IPR019775   WD40_repeat_CS       
SUPFAM
SSF50978   SSF50978       
Gene 3D
PDB
6F3A     E-value=1.31757e-26,     Score=299

Ontologies

Topology

Subcellular location
  
Length:
581
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.05199
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00128
outside
1  -  581
 
 

Population Genetic Test Statistics

Pi
7.008629
Theta
61.501694
Tajima's D
0.56223
CLR
1.088594
CSRT
0.529723513824309
Interpretation
Uncertain
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