SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10349
Pre Gene Modal
BGIBMGA000001
Annotation
PREDICTED:_putative_homeodomain_transcription_factor?_partial_[Bombyx_mori]
Location
Bomo_Chr17(-):8007025-8019184      View in EpiBrowser
Location in the cell
PlasmaMembrane   Reliability : 2.211
 

Sequence

CDS
ATGAAACAATTGGCAGCATGGTACCAAAAAAAAATAAGCTCCTATGACAAAGAAGAATGGGAGACCATGGTCGAACAACTATTGATGCGAGGCACATACCGCCGACGTATCGTAGACTTTTCATCGCACGCGCGTTCGTATCTCATAGACGTTGATTTAGTAAGAGGATCATCGTTCCCGAAAGCGAAGCCCACCCTGGGAATGCGCCGGGTTGTTTGGTTCGCTCTAGTCAGACTAGTGTTCCTACCCGCACTGTTCCAATGGTGGGCTCAGCAGACGTCACCAGCTTGTGCCAAATTCCTATTAACACTATGGCTCTTACAAGTACTGAATATATCTCTTTACCTCATGTCACCAGATAACTTGGATGTTGACCCAAATTGCTGGTTGGTGCCATTAGGCTTAATGCTGGTGCTGAGTATGGTGCATTCACAAATAGTTAGTACGACGGAAATGGAAATTGCTAGAGTACGTCCCCGTTCCACTTATCGACGGAAACTGCCGCGATATTTCAGACGACCACGGTCAGAATGTGACGGCGGCAGTGCGGGTGGTTCCGCCGAAAGTGGTGCTACATCTAGCCAAAGTAAGACTCCTACCACAAAACCCTCCAAATTCAGGCGCCGACAGTCCAGAAGTGAACTAAGTGACAATGGACTCAGAAAACGCAAGAAAGAACTGCCAAAGGAAAATGTTAGCACACCTCTTGAACCGACCGCGAAAAATAAAGCGATAGTCAAACTTAAAGCCAAAGATTCGGACGACGAAGACTATATGGCTTGGAAGAAACCGGATATAAACACTCCCATAGTAACGTTCACCCCACCGCCGGACGATGCTACACCTAGTTCCTCCTTTAGATATAAGTCTAATATATTGACTAAAAAGCATTTAGAATCTTTTAATGTAAGACAAAATCAGCATAGGGCGTTATTCGCTGACGGTGACGACGGCTTCGAAAGCCTCAACGGTTACAACTCGAACGGGAGCGACGGAGACAACAGGGTAAAAATCTTACAGGCCAGACTTTCTGGTAATAAAATAGTTAGTAACGAAAGGAATGAGGTGACAGCAAAAGATGATTCGGCCAATGACGTTGACAAAACACCGATTGACAAAGTTGAAGAGAACTCCACAACAACCGCCAAAGCAAACGTTTTAAAGACAGAGAACGATGAGAAATCGAACGAACCAGACTCTGATGTTAATGTCACTGACAGTCCTAATAGAGGAAAGCGAATCGGTGTACGTTTCAGAAGCTCGTGGATACCAGAGAACGTGCGAAACGAATCAAGTGACGATGATTTTGCTAACGTTAAGAATAAGCAAAAGAAAATTGAGACTTTCCAAACGTCGTCATCCGATGGAGAATGTTCTGCTTCTGCGCCATCGATCGCTCTGCCATCCCACCACACTATGTCTGACTGGGTTGGCCAAACTACTAACAGTGAGGAGAGTAGTTACTGTTCACAATCCGAAGGGGGTAATTCTGACGTGGGCTTCCATTACGCCGCGGATAGCTCCTGGGATCCGTTCGCCTTACTAGACCCTACAAGCGATACAGTGAAATGCACAATGTGGGAACGAGGTTCAACTCTACGCGCTGAGCTGTCGGCCGTCGACATTAGTTGGTACGTGGTGGCGCGCGCCGAGCGAGCCATGGCCGCCGAAGGCTGCGTCTGGGCGGGTCTGGCTATGGCCACCATCGTCGCGTTACTCACGCCCGCAATACGACTCACGCAGTTGGCCATAGATCAAGACACGAGAACAGAAGAAGAGACGCAATCAATGACAATTTTCTTGTACATAATATCTGTCGTCGTCAACTACAGCAAGGGCTCTGTTTTATATATACTCTACGGAGCGTTCGGAGATAATGCTTGGGAATTGATGACGAATATAATATCATGCATCCTGCGTTTCGCTCTAAGCGGCCTCATGTTCTTCCTACTGGCCGTTGCAGAACGTGCCTACAAACAGAGGTTCCTATACGCGAAACTGTTCTCTCATCTGACGTCGGCGAGACGGGCCCGGAAATCGGAGCTGCCACACTTCAGACTCAACACGGTCAGGAACATCAAGACTTGGCTTTCGACTCGTTCTTATTTACGGCGCCGTGGCCCTCAACGTTCTGTAGACGTCATAGTGTCCGCTGCCTTCATGCTCACATTGATTTTGCTTGCATGCGTCAGCGCTCACTTATTGCGGGATTCGGTGACGTTAGAAGAAGGATGGCTGTTCGAAGCGATGGTTTGGATTTGCTGTCTCGGGATATACTTGATGCGTCTGATCACGTTGGGCAGTAACGTCAACAAAAAGTACCGAGGCTGTCTGTCGGCCATTCTCACAGAGCAGATCAACTTGCATCTAGCCATAGAACAGCGACCGGAGAGCAAAGACCAATTGACTGTGGCCAATAACGTACTCAAATTAGCCGCCGATCTGCTGAAGGAACTAGACGCGCCTTTCAAGATATCCGGTATATGTGCTAATCATTATTTGTACACCGTATCGAAAGTTGTGATATTGTCCGCCCTGTCGGGTGTTCTATCCGAGATGCTGGGTTTCAAATTGAAATTACACAAAATCAAAATCAAATAG
Protein
MKQLAAWYQKKISSYDKEEWETMVEQLLMRGTYRRRIVDFSSHARSYLIDVDLVRGSSFPKAKPTLGMRRVVWFALVRLVFLPALFQWWAQQTSPACAKFLLTLWLLQVLNISLYLMSPDNLDVDPNCWLVPLGLMLVLSMVHSQIVSTTEMEIARVRPRSTYRRKLPRYFRRPRSECDGGSAGGSAESGATSSQSKTPTTKPSKFRRRQSRSELSDNGLRKRKKELPKENVSTPLEPTAKNKAIVKLKAKDSDDEDYMAWKKPDINTPIVTFTPPPDDATPSSSFRYKSNILTKKHLESFNVRQNQHRALFADGDDGFESLNGYNSNGSDGDNRVKILQARLSGNKIVSNERNEVTAKDDSANDVDKTPIDKVEENSTTTAKANVLKTENDEKSNEPDSDVNVTDSPNRGKRIGVRFRSSWIPENVRNESSDDDFANVKNKQKKIETFQTSSSDGECSASAPSIALPSHHTMSDWVGQTTNSEESSYCSQSEGGNSDVGFHYAADSSWDPFALLDPTSDTVKCTMWERGSTLRAELSAVDISWYVVARAERAMAAEGCVWAGLAMATIVALLTPAIRLTQLAIDQDTRTEEETQSMTIFLYIISVVVNYSKGSVLYILYGAFGDNAWELMTNIISCILRFALSGLMFFLLAVAERAYKQRFLYAKLFSHLTSARRARKSELPHFRLNTVRNIKTWLSTRSYLRRRGPQRSVDVIVSAAFMLTLILLACVSAHLLRDSVTLEEGWLFEAMVWICCLGIYLMRLITLGSNVNKKYRGCLSAILTEQINLHLAIEQRPESKDQLTVANNVLKLAADLLKELDAPFKISGICANHYLYTVSKVVILSALSGVLSEMLGFKLKLHKIKIK

Summary

Uniprot
A0A2A4JU70   A0A2A4JVC8   A0A2H1VJ61   A0A3S2M595   A0A2A4JV60   A0A194QBI0   + More
A0A212F6H1   A0A0L7LGE9  
Pubmed
26354079    22118469    26227816   
EMBL
NWSH01000569    PCG75577.1    PCG75574.1    ODYU01002863    SOQ40870.1    RSAL01000036    + More
RVE51265.1    PCG75578.1    KQ459232    KPJ02817.1    AGBW02010016    OWR49336.1    JTDY01001209    KOB74527.1   
Proteomes
UP000218220    UP000283053    UP000053268    UP000007151    UP000037510   
Pfam
PF12129   Phtf-FEM1B_bdg
Interpro
IPR021980   TF_homeodomain_male        + More
IPR039775   PHTF1/2       
ProteinModelPortal
A0A2A4JU70   A0A2A4JVC8   A0A2H1VJ61   A0A3S2M595   A0A2A4JV60   A0A194QBI0   + More
A0A212F6H1   A0A0L7LGE9  

Ontologies

KEGG
101742320    no KO assigned | (RefSeq) putative homeodomain transcription factor
GO
GO:0016021   GO:0003677  
PANTHER
PTHR12680  

Topology

Length:
866
Number of predicted TMHs:
6
Exp number of AAs in TMHs:
178.26978
Exp number, first 60 AAs:
0.00023
Total prob of N-in:
0.98875
inside
1  -  70
TMhelix
71  -  90
outside
91  -  559
TMhelix
560  -  579
inside
580  -  598
TMhelix
599  -  621
outside
622  -  630
TMhelix
631  -  653
inside
654  -  711
TMhelix
712  -  734
outside
735  -  743
TMhelix
744  -  766
inside
767  -  866
 
 

Population Genetic Test Statistics

Pi
165.836872
Theta
157.023613
Tajima's D
-0.603984
CLR
1.008022
CSRT
0.219139043047848
Interpretation
Uncertain
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