Gene

KWMTBOMO10339

Pre Gene Modal

BGIBMGA007228

Annotation

putative_amino_acid_transporter_[Bombyx_mori]

Location

Bomo_Chr17(-):7896964-7902032      View in EpiBrowser

Full name

Transporter      

Location in the cell

PlasmaMembrane   Reliability : 4.905

CDS

ATGTTTTCTTCGTACAACAAATTCAGTCAAAATGTTTACAGAGACTCTATGATTGTGACAACACTGGACACATTTACGAGCTTAATATCTGGAATCACCATTTTTGGTGTGCTAGGTAACCTCGCATACCAACTGGGATACGATGATGTGGGAAGAGTTATCGGAGCTGGCGGAACAAGTCTTGCTTTCATCTCCTACCCAGATGCGATTGCGCAATCACCAATAGTACCACAGTTATTTGCGGTGCTGTTCTTCCTCATGATGGCTGTGCTGGGCGTCGGTTCTGGCGTAGCATTACTCTCCACCGTCAATACTGTGTTATTGGATGCGTTTCCGCGAGTACCCACGGTTTACATGTCGGCTACAACATGTACTATAGGTTTCCTTGTGGGACTTATTTATGTGACACCGGGAGGACAATACATTTTAGAATTAGTAGACTACTACGGAGGAACATTCATGCGATTGTTCGCGGCTATCACTGAAACTATTGGAGTTTTCTGGATTTACGGTCTGGAGAACCTATGTGTTGACATTGAATTCATGTTAAACATAAAGACATCGTTCTACTGGCGTATTTGTTGGGCCATTGTAACACCAGTTATTATGATTGTAGTGTTTATTTACGCTCTCATCACCACAGAAGCTCTACTGTTCGGAAATGTTTATGTATATCCGAGAGGAGCCTACATTGCTGGTAGCGCGCTGCAGTATGCCGGAATGGTACTTATACCAATATTTATTGCTCTGGCACTTTGGAAATATAGATCTGGAACATTTATAGAGACCGTGAAGCGTTCGTTCCTCAAAAAAGACACATATGGTCCAAGAGAAATTCAGAAACGTGAGGAATGGCGAGCGTTCCGACGAGACGCCAAATCCGAACGTAAACTCAAGAGGAAGAATTGGTTCCATCACGTATTATATTCTCTAATCGGCGGGTATCGCAGGAAGCGGTAG

Protein

MFSSYNKFSQNVYRDSMIVTTLDTFTSLISGITIFGVLGNLAYQLGYDDVGRVIGAGGTSLAFISYPDAIAQSPIVPQLFAVLFFLMMAVLGVGSGVALLSTVNTVLLDAFPRVPTVYMSATTCTIGFLVGLIYVTPGGQYILELVDYYGGTFMRLFAAITETIGVFWIYGLENLCVDIEFMLNIKTSFYWRICWAIVTPVIMIVVFIYALITTEALLFGNVYVYPRGAYIAGSALQYAGMVLIPIFIALALWKYRSGTFIETVKRSFLKKDTYGPREIQKREEWRAFRRDAKSERKLKRKNWFHHVLYSLIGGYRRKR

Similarity

Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.

Uniprot

H9JCI3   B2ZXL8   A0A2A4JQ17   A0A2A4JN91   A0A3S2M4K9   A0A2A4JPM7   + More
A0A194QH91   A0A2H1VSW1   A0A194QSZ7   A0A212EKM3   A0A2H1VRW7   O76188   A0A212EKP1   A0A2A4JNI2   Q9U5A9   A0A2A4JUB4   A0A2A4JQ43   A0A1E1W0N5   A0A1E1VZ02   F4WTJ6   A0A2J7PKX9   E0VLW4   E2BSN7   A0A151IG48   A0A1A9WAV7   A0A1B0B655   A0A1I8MYH7   A0A1J1HQJ1   A0A1A9XLV3   U5EJQ1   A0A151XF32   A0A1I8Q6E3   A0A088AJX5   A0A026W3G2   A0A195DL34   D6WWF3   U5EIG6   A0A151JZN3   A0A067RFW9   A0A0A1XSM6   W8C737   B0XJA5   A0A088AJX6   A0A2J7PKT0   A0A0R3NLF5   A0A2P8XSH2   D6WWF2   B5DZG7   A0A0K8V9C6   A0A2A3ECG5   A0A088AJW4   A0A0M4MP60   B4GDP4   A0A310SK53   A0A151I4Q8   J9HFX8   Q8IST0   Q16YU3   E2AWU5   A0A158NLY7   Q6VS78   A0A3B0JNJ0   A0A1A9UT47   V5G185   W8CE58   A0A1I8P4C4   A0A182T4N8   A0A1W4XAC2   A0A2M4BIW9   A0A2A3EB77   A0A1I8N4K6   A0A0K8VKH9   A0A0L0C9H7   A0A0K8W0X0   A0A0L0BU43   A0A3B0JVN4   A0A0M4E615   A0A3B0J223   A0A034WJ71   A0A182JB06   A0A0C9R7W8   A0A034WKU2   A0A1B0G2B5   A0A0K8V586   A0A084WUR0   A0A1Q3FXN8   A0A1Q3FY76   A0A0A1WL06   A0A182YMH2   A0A1Q3FYN4   A0A1Q3FYM9   A0A2M4AQ33   B4LJR2   A0A182U568   A0A1Q3FYP6   W8B8H0   A0A1Q3FXI4   A0A1Q3FYH5   A0A3B0JYF6   A0A182GFI3  

Pubmed

19121390    18495929    26354079    22118469    9560287    10829035    + More
21719571    20566863    20798317    25315136    24508170    18362917    19820115    24845553    25830018    24495485    15632085    17994087    29403074    17510324    21347285    26108605    25348373    24438588    25244985    26483478   

EMBL

BABH01039076    BABH01039077    BABH01039078    BABH01039079    AB365597    BAG39453.1    + More
NWSH01000921    PCG73533.1    PCG73535.1    RSAL01000036    RVE51256.1    PCG73534.1    KQ459232    KPJ02811.1    ODYU01004070    SOQ43562.1    KQ461155    KPJ08125.1    AGBW02014242    OWR42034.1    SOQ43560.1    AF006063    AAC24190.1    OWR42035.1    PCG73531.1    AF013963    AAF18560.1    NWSH01000569    PCG75591.1    PCG73532.1    GDQN01010565    JAT80489.1    GDQN01011140    JAT79914.1    GL888337    EGI62477.1    NEVH01024531    PNF16994.1    DS235282    EEB14370.1    GL450241    EFN81283.1    KQ977743    KYN00191.1    JXJN01008983    CVRI01000017    CRK90243.1    GANO01002161    JAB57710.1    KQ982205    KYQ59002.1    KK107503    EZA49584.1    KQ980762    KYN13552.1    KQ971361    EFA08708.1    GANO01002650    JAB57221.1    KQ981347    KYN42481.1    KK852489    KDR22766.1    GBXI01000417    JAD13875.1    GAMC01000772    JAC05784.1    DS233472    EDS30142.1    PNF16938.1    CM000071    KRT01700.1    PYGN01001423    PSN34958.1    EFA08707.1    EDY68808.1    GDHF01016852    JAI35462.1    KZ288308    PBC28721.1    KR075870    ALE20589.1    CH479181    EDW31701.1    KQ763581    OAD54951.1    KQ976458    KYM84798.1    CH477509    EJY57747.1    AF543193    AAN40410.1    EAT39788.1    GL443425    EFN62065.1    ADTU01019952    ADTU01019953    ADTU01019954    ADTU01019955    ADTU01019956    ADTU01019957    ADTU01019958    ADTU01019959    ADTU01019960    ADTU01019961    AY330296    AAR08269.1    OUUW01000001    SPP75129.1    GALX01004691    JAB63775.1    GAMC01000771    JAC05785.1    GGFJ01003859    MBW53000.1    PBC28724.1    GDHF01013239    JAI39075.1    JRES01000735    KNC28897.1    GDHF01026249    GDHF01013083    GDHF01012900    GDHF01007809    JAI26065.1    JAI39231.1    JAI39414.1    JAI44505.1    JRES01001335    KNC23567.1    SPP75128.1    CP012524    ALC41841.1    SPP75127.1    GAKP01004550    JAC54402.1    GBYB01002861    JAG72628.1    GAKP01004549    JAC54403.1    CCAG010020761    GDHF01018406    JAI33908.1    ATLV01027104    KE525423    KFB53954.1    GFDL01002710    JAV32335.1    GFDL01002526    JAV32519.1    GBXI01014971    GBXI01010470    JAC99320.1    JAD03822.1    GFDL01002392    JAV32653.1    GFDL01002366    JAV32679.1    GGFK01009570    MBW42891.1    CH940648    EDW60571.1    GFDL01002382    JAV32663.1    GAMC01013157    JAB93398.1    GFDL01002770    JAV32275.1    GFDL01002452    JAV32593.1    OUUW01000003    SPP78406.1    JXUM01010513    KQ560310    KXJ83117.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000053240    UP000007151    + More
UP000007755    UP000235965    UP000009046    UP000008237    UP000078542    UP000091820    UP000092460    UP000095301    UP000183832    UP000092443    UP000075809    UP000095300    UP000005203    UP000053097    UP000078492    UP000007266    UP000078541    UP000027135    UP000002320    UP000001819    UP000245037    UP000242457    UP000008744    UP000078540    UP000008820    UP000000311    UP000005205    UP000268350    UP000078200    UP000075901    UP000192223    UP000037069    UP000092553    UP000075880    UP000092444    UP000030765    UP000076408    UP000008792    UP000075902    UP000069940    UP000249989   

PRIDE

H9JCI3    B2ZXL8   

Pfam

PF00209   SNF        + More
PF00246   Peptidase_M14
PF01423   LSM

Interpro

IPR000175   Na/ntran_symport        + More
IPR037272   SNS_sf       
IPR000834   Peptidase_M14       
IPR010920   LSM_dom_sf       
IPR034100   Sm_F       
IPR001163   LSM_dom_euk/arc       

SUPFAM

SSF161070   SSF161070        + More
SSF50182   SSF50182       

CDD

cd01722  Sm_F

ProteinModelPortal

H9JCI3   B2ZXL8   A0A2A4JQ17   A0A2A4JN91   A0A3S2M4K9   A0A2A4JPM7   + More
A0A194QH91   A0A2H1VSW1   A0A194QSZ7   A0A212EKM3   A0A2H1VRW7   O76188   A0A212EKP1   A0A2A4JNI2   Q9U5A9   A0A2A4JUB4   A0A2A4JQ43   A0A1E1W0N5   A0A1E1VZ02   F4WTJ6   A0A2J7PKX9   E0VLW4   E2BSN7   A0A151IG48   A0A1A9WAV7   A0A1B0B655   A0A1I8MYH7   A0A1J1HQJ1   A0A1A9XLV3   U5EJQ1   A0A151XF32   A0A1I8Q6E3   A0A088AJX5   A0A026W3G2   A0A195DL34   D6WWF3   U5EIG6   A0A151JZN3   A0A067RFW9   A0A0A1XSM6   W8C737   B0XJA5   A0A088AJX6   A0A2J7PKT0   A0A0R3NLF5   A0A2P8XSH2   D6WWF2   B5DZG7   A0A0K8V9C6   A0A2A3ECG5   A0A088AJW4   A0A0M4MP60   B4GDP4   A0A310SK53   A0A151I4Q8   J9HFX8   Q8IST0   Q16YU3   E2AWU5   A0A158NLY7   Q6VS78   A0A3B0JNJ0   A0A1A9UT47   V5G185   W8CE58   A0A1I8P4C4   A0A182T4N8   A0A1W4XAC2   A0A2M4BIW9   A0A2A3EB77   A0A1I8N4K6   A0A0K8VKH9   A0A0L0C9H7   A0A0K8W0X0   A0A0L0BU43   A0A3B0JVN4   A0A0M4E615   A0A3B0J223   A0A034WJ71   A0A182JB06   A0A0C9R7W8   A0A034WKU2   A0A1B0G2B5   A0A0K8V586   A0A084WUR0   A0A1Q3FXN8   A0A1Q3FY76   A0A0A1WL06   A0A182YMH2   A0A1Q3FYN4   A0A1Q3FYM9   A0A2M4AQ33   B4LJR2   A0A182U568   A0A1Q3FYP6   W8B8H0   A0A1Q3FXI4   A0A1Q3FYH5   A0A3B0JYF6   A0A182GFI3  

PDB

6AWQ     E-value=2.41391e-36,     Score=380

KEGG

100174816    K05038 solute carrier family 6 (neurotransmitter transporter, glycine) member 5/9 | (RefSeq) +nsd-2,

GO

GO:0005328   GO:0016021   GO:0015293   GO:0004181   GO:0008270   GO:0015179   GO:0005283   GO:0005886   GO:0000387   GO:0005681   GO:0006836   GO:0005515   GO:0006415   GO:0006418   GO:0003723   GO:0046872   GO:0003824  

PANTHER

PTHR11616  

Length:

319

Number of predicted TMHs:

6

Exp number of AAs in TMHs:

145.43619

Exp number, first 60 AAs:

26.96153

Total prob of N-in:

0.46397

POSSIBLE N-term signal

sequence

inside

1  -  20

TMhelix

21  -  43

outside

44  -  78

TMhelix

79  -  101

inside

102  -  113

TMhelix

114  -  136

outside

137  -  150

TMhelix

151  -  170

inside

171  -  190

TMhelix

191  -  213

outside

214  -  227

TMhelix

228  -  250

inside

251  -  319

 

 

Pi

150.739005

Theta

2.064892

Tajima's D

-2.03196

CLR

178.836545

CSRT

0.00644967751612419

Interpretation

Possibly Positive selection