SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10338  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA007245
Annotation
hypothetical_protein_KGM_03185_[Danaus_plexippus]
Location
Bomo_Chr17(+):7856823-7893518      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 3.929
 

Sequence

CDS
ATGTCTGTGCACTATAAATTCAAAAGTGCATTGGATTATGACACGGTTACATTCGACGGTCTTCACATATCTGTAGGTGACCTGAAAGCTGCAATATCTCAGCAAAAACGCATTGGCAAAACTTCGGACTTTGATTTAGAAATCACTAATGCTCAAACCAAAGAGATATATGTTGATGACAATGCTTTGATTCCAAAGAATACATCTCTCCTGGTTGCCAGAGTTCCACTTTCTCAACAACCAAAGAAGCAGTGGGAAGGCTCAAATAGTAATTCAGCTCCACATAAAGATGTTACTGTTAATAAAGGACTGGCTGATCTATCTCGCATGGAAGGTAGCGAACAGGATAAAATAAATGCTATGATATCACAATCAACATTTGACTACGACCCTAGCAATTATCAGAAAATAAGAGGACAAAATCAGAGAGGGGCAGTGCCATCTAATTACATTTGTTATAAGTGTCAAAAGCGAGGACACTGGATAAAAGATTGTCCTGCTGCAAACTCAGGCGAGCCAGTGGAAATACGACGGAGTACAGGTATTCCTCGTAGTTTTATGGTACCTGTTGAAGGACCAAAGGCACCGGGCGCCATGATGACTCCGAGTGGAACCTTTGCAGTGCCTGCCGTAGATCATGAGGCTTATATGGCCTCTGAGAACTGTGCTGGTGATCCATCTGGTAGCGCACCCAGCGCTCCCGAACCAACCATACCGGATGAACTAATTTGTAGTCTGTGTCGCGATCTTCTCACCGACGCTGTAATGATACCGTGCTGTGGAAACTCTTTTTGTGATGAATGCATAAGAGGTGCGTTACTGGAATCTGAGGATCATGAATGTCCCGACTGTCGGGAAAAAGAAATATCTCCAACAACACTTATTCCAAACAGATTCTTGAGGAACTCTGTGTCGTCTTTTCGCAATCAAACTGGATACAGCCGGCGAGCACCTCATCGACCCTCGGTCACGCCAGCTCAAGCCCGTGCTCCGATAAAAGAGGCAACCACTGCATCGAGTGTACAACAACCTCCACCGAATGGACCCGTTAAACCGCAAGTCACAGCCTCTGTCGAGAGTCGCGGCGGCGAGGAGTCGGACGGGTCGGCGGACGACAACATCACAGTCACGATGCCGCCCAAGCTCGCGCACCACGCACCGCATCGACACTACAGATACGGCCATCAACCGATGATAAAACCAGTTGTCGAAAATCCAAATTCATCCATACCACTCAATTTACCTAGAATTGAAGAACAAAGGGCTAGCACTCCAACAATAGATGAACGAAGAGAACCAATGGAACGAAGAGATCCAATGTCTTCTCAGATTCCGTACAATCGAGGTCCTCACCCGTTCGCTCATGGAGCATCGCAACCACCTCAACGTTTTAACGATCCACCGCGATTCGGTCCGCCGCCCGGTCCTGGATTTGTTGAGCGTTTTCCTCCTGAACCGTATCAACCACCTCCACCCGGTATCAAAGAGTCGCCTTCTAACAGGCCGGGTGAGGATCCGCTGGAGGCTTTCAACCGGATGATACGCGAGAAGGAGATGCGAGCCAAGCGGCGTGAGGAGGAGCGGCGCCGCGAGCTGTCTCCGTCGCGTTCGATGTCGCGCGGCCGCTTGCGACGTTCACCGTGGTCGCCAAGAAGACGCCGCACGCGCAGCCGTTCTCTCTCGCTAACGAGGTCGCCGTCCCCCCGGCGTCGCATGCGGTCTCCCATACGGTACCGTTCGCCCCCTCTGCGGTCGCCGCCCCGCTCGCCGCTACGCTCGCCGATCCGCTCCCCGCTCCGCTCGCCGGTGCGGTCCCCACGCCGCACGCCGCGACGTTCGCCGCCGCCACCGAGATCCTCACCGCACAGATATGCCGGAGTATACGACGAACTAATGTCCCCCCCGAGACGTAGCGTAGAGCCGCCGTATGGAGCCAGATACGGACCTAGAAATAGTATTCCACCACCATCATATCCACCTATAGGTGTGAAAACAATAGCTCCCATGGGCGGTATCCCGATTCAAGCTGATCAACCACCTGGCTATCGAGGGCGTTATGACATGCCACCATTTGAAGACATTCCTCCTGGTCTGGAGCCACCTGTACCAGGATTTGAACCATCGCCTTTTGAGAAACCGTCTTTTGGACCACCAGTTGGACTTGATCGTGAAAGATTACCACATCCAAATTACAGAGACTCGTATAGACCTCCAGCTTACGTCGAAGGCCCACCTCCCTTTAGAGACATACCAATAGCCGTTGGTCCTACAGAAATTCCAGTACACGTTGGTGAACAATCTCGCTATCGAGATAATTTTAGACCAGGACCTTATCGTGATCAAGGTTCAGTACCTTTTAGGGACGGGCCTCCTTATAGAGAATCAGGATCACAACCCCCTCCTTTTAGAGATCCTAATTACAGGGGTGCTGCACCATTTCGTGATAACTCTTATAGGAGTGCTCCGTATAGAGATAACACATTTAGAGATAATCCACCTCATAACAACTTCCGTGATGGCGTGCCTCCGTTTAGACAATCTAGTCCTGAGTCTAATGTTCATCATGAATCAAACTTTCGTGATACTTATAGAGACGATAATATTGTGCCTAATCGACCTGGGTATCGCTCTAATGTTCGTAGTAGAATTGGACCTAGGCGTGACCCTAATATTGAACATGAAAGACACAGAGACAGAGAAGGACGAGAGAGAGATAGATACGCTGATAATCGAGATCCTCCTGAAAGGAATGATCGTATTCGTAATTCTGATAGAAGACCGGGGTATGACAAGAGTAGAGAAACGCGTGATGATCGTCGCGAAATTGAAAGAAATAGAGAGTCTGAAAGAGCTCGCGATCACGAAAAAACTCCTGACAAGAAAACTAGAACTTCTCCAAAACATCGGGACTCGCGCGATAAAAAACGCAGTGAATCAAGAGGTCGATCTAGGGATCGCGAGCGCGATAGACGCGAGAAGAAAGAAGATAGAACTCGTGACAAGACTTCCGCTGATAGAAGTAAAGATCATAAAGAAAAAGAGAAAAAGCTCAAAGAGCGGAAGAAGAAAAAAAGGGAAAAAGAAAAAGAGAAAGATATCGAAAAGAAGAAAAAGCGGGATAAGAAAGAAAAGAAGGACAAAGACGTTAAAAAAGAAGATGAGGATCCTGAGAAAAGTGATGTGAAAGACGCCATAGAAAAACAAAATGAAGTATCCAATTTACTAAGAATTGAGAAGCCGGTTGAAATCAAAGAAGAAAATAAAAATGTCGAAGAGACGATTCCAACAACTAATTCTCCAAAAACTGAACAAAAAGATAAAGTTGTGTTTGATGATTTATATGGCGATGAAGTCGTGGGAGCTGTTGATAAAGAGATAATACAAACTTACGTCAAAAATGATGTCAACGAATCGGTACCTGAAACCAATAACTCGGACATCGTGACCAAGGAAGAGCCCTTTGATGGAATCGAATTGCAGGCTAATGCTGATGAGTTGGATTTAAAACTGGAAGAAAGTAATGGTCAAAATAGTAAAGAAATGTTAGCCCCTTTGCCCGAATTGTCTAAATGGGAAGTAGATGATGAATCTGCTGACAAAAAAGAAGGTGAAGTAATGTCTCCTAAAGAAAAGGCAGACGGCACTAAAGTGACTTCAGATGTTATTAAAAGAGCTGAGAATGCAATTTTCGCAAAAGCAATTCATTCTTTGAAACCCATAGAAATAAAGAAAATTAGCGGGGATCGAGTTAAGCTCTATGATGATGAGGCTCCAAAATCTACAATGAATAATATTCAGATTACTGTTCCAGTTACAGAAATGGATCATAGATCTATAGAAGTAAATGAGAAAAAGAAAGCTCATTCTAAAACGCCACCTCCTAGGTTGTCTGTCAAAGAAAGATTAGGAGGGAAAGTGGACGAAATTAGAAGAAATAGAGAAGCTCGTGTTATTCACAGTACAGTAGAGAGAGTAAAATCTCGCTCTAAAACACCGAAGAGGGAAACTCAGCATTATCGCAGAGTAACGGTTGAAAAGGACAGGAATAGAAAAGGAGACGCATTGAGACCGGTATCGGGTAAAGGCGATAGAAGAGTATTTTCAGAAAACGTGAAAGTCGAAAAACAACACTTTACTTCAAACGAGAAAAGAGAAAATATTGAAAAGGGAGTAGAATCGCGTGACAGACAAGAAAAAAAATCAGATCCTAAAGTTTCACATCATGAGAGAAAAAAATCAACATTGGACGAAGCTCATTTTGAACCAGACTATGATGAAACTGTAGAGTCTGAAACTGAAACGAAAGAAGAACCTCCTAAAAAACGAGACTATATGTCGCTCAGTGATAAATTGAGTGATAAAATGAATATTAATTATGAAAATAAGAAATCTAAGCTAGATGTTGAATCATTAAACTTGGTGAATTTAAAAAGAAAACCTGAACCTGAAACTGACTCTTCCAGTGATTCAGACGACTCGTCATCATCTTCTTCGTCTGAAGAACGAAAAAGAAAGAAGAAAAAGAAACGTGCTAAGAAGAAAAAGAAACGCGCTGCAAGTGACAGTGACAGTGATTCTGATTCTAGTTCAGATGATCATAAGAAAAAAAAGAAAAAGCGTAAACACAAGAAAAAATCCAGCAAGAAGAAGAAAAAGTCTAAACATAAGTAA
Protein
MSVHYKFKSALDYDTVTFDGLHISVGDLKAAISQQKRIGKTSDFDLEITNAQTKEIYVDDNALIPKNTSLLVARVPLSQQPKKQWEGSNSNSAPHKDVTVNKGLADLSRMEGSEQDKINAMISQSTFDYDPSNYQKIRGQNQRGAVPSNYICYKCQKRGHWIKDCPAANSGEPVEIRRSTGIPRSFMVPVEGPKAPGAMMTPSGTFAVPAVDHEAYMASENCAGDPSGSAPSAPEPTIPDELICSLCRDLLTDAVMIPCCGNSFCDECIRGALLESEDHECPDCREKEISPTTLIPNRFLRNSVSSFRNQTGYSRRAPHRPSVTPAQARAPIKEATTASSVQQPPPNGPVKPQVTASVESRGGEESDGSADDNITVTMPPKLAHHAPHRHYRYGHQPMIKPVVENPNSSIPLNLPRIEEQRASTPTIDERREPMERRDPMSSQIPYNRGPHPFAHGASQPPQRFNDPPRFGPPPGPGFVERFPPEPYQPPPPGIKESPSNRPGEDPLEAFNRMIREKEMRAKRREEERRRELSPSRSMSRGRLRRSPWSPRRRRTRSRSLSLTRSPSPRRRMRSPIRYRSPPLRSPPRSPLRSPIRSPLRSPVRSPRRTPRRSPPPPRSSPHRYAGVYDELMSPPRRSVEPPYGARYGPRNSIPPPSYPPIGVKTIAPMGGIPIQADQPPGYRGRYDMPPFEDIPPGLEPPVPGFEPSPFEKPSFGPPVGLDRERLPHPNYRDSYRPPAYVEGPPPFRDIPIAVGPTEIPVHVGEQSRYRDNFRPGPYRDQGSVPFRDGPPYRESGSQPPPFRDPNYRGAAPFRDNSYRSAPYRDNTFRDNPPHNNFRDGVPPFRQSSPESNVHHESNFRDTYRDDNIVPNRPGYRSNVRSRIGPRRDPNIEHERHRDREGRERDRYADNRDPPERNDRIRNSDRRPGYDKSRETRDDRREIERNRESERARDHEKTPDKKTRTSPKHRDSRDKKRSESRGRSRDRERDRREKKEDRTRDKTSADRSKDHKEKEKKLKERKKKKREKEKEKDIEKKKKRDKKEKKDKDVKKEDEDPEKSDVKDAIEKQNEVSNLLRIEKPVEIKEENKNVEETIPTTNSPKTEQKDKVVFDDLYGDEVVGAVDKEIIQTYVKNDVNESVPETNNSDIVTKEEPFDGIELQANADELDLKLEESNGQNSKEMLAPLPELSKWEVDDESADKKEGEVMSPKEKADGTKVTSDVIKRAENAIFAKAIHSLKPIEIKKISGDRVKLYDDEAPKSTMNNIQITVPVTEMDHRSIEVNEKKKAHSKTPPPRLSVKERLGGKVDEIRRNREARVIHSTVERVKSRSKTPKRETQHYRRVTVEKDRNRKGDALRPVSGKGDRRVFSENVKVEKQHFTSNEKRENIEKGVESRDRQEKKSDPKVSHHERKKSTLDEAHFEPDYDETVESETETKEEPPKKRDYMSLSDKLSDKMNINYENKKSKLDVESLNLVNLKRKPEPETDSSSDSDDSSSSSSSEERKRKKKKKRAKKKKKRAASDSDSDSDSSSDDHKKKKKKRKHKKKSSKKKKKSKHK

Summary

Uniprot
NA  
ProteinModelPortal
NA  
PDB
3ZTG     E-value=4.24544e-27,     Score=307

Ontologies

KEGG
101745865    K10624 E3 ubiquitin-protein ligase RBBP6 [EC:2.3.2.27] | (RefSeq) E3 ubiquitin-protein ligase RBBP6
GO
GO:0005634   GO:0008270   GO:0003676   GO:0005515   GO:0006415   GO:0016021   GO:0006418   GO:0003723   GO:0046872   GO:0003824  

Topology

Length:
1556
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00038
Exp number, first 60 AAs:
0.00018
Total prob of N-in:
0.00002
outside
1  -  1556
 
 

Population Genetic Test Statistics

Pi
186.990387
Theta
188.031527
Tajima's D
0.210534
CLR
104.493836
CSRT
0.433828308584571
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26280517 THYTIGYNVPSYEYIYHSGNEYIIK 100.00 4e-05
26280517 DSVAKDIVEIIDKTHAQMFER 100.00 3e-04
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