Gene

KWMTBOMO10337  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007230

Annotation

Ef1alpha-like_factor_isoform_1_[Bombyx_mori]

Location

Bomo_Chr17(-):7844886-7854572      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 3.279

CDS

ATGTCCAATAACGGTGCTCCGGATTCATGGGAAAATGAAGCGGAAATAATAGGTGAAAAAGGATGTGGCGATGGAGGCGGAGAAAGCAGTGATGGTGGTGCAGCATCTGCTTCTCCACGTGTTGAAGAACCACCACCTACTACTGCATCTGTCCCGCCCGATGTCTCGCCCACTGCAGACAGCTGGGAAGTTGAGGCTGATGATGCACTACTCACACCTGAAGAAAACAATGAACCGGAAGAAGAAGAATTGGATACACAAGTAGGAAACACAAATCCTAACGAGGATGGTGAATTAACAAAAAAGATTCCAAAGAAAAAACCACCACGAGTAGAAGATACACGAAGCAAAAAAGAACATGTAAATGTAGTATTTATAGGACATGTAGATGCAGGAAAGTCGACTATTGGTGGTCAAATAATGTCACTCACTGGAATGGTCGACAAAAGAACATTAGAAAAATATGAAAGAGAAGCGAGAGAGAAATCAAGAGAATCATGGTACTTATCATGGGCACTGGACACAAATCAAGAAGAACGAGACAAAGGCAAAACAGTAGAAGTTGGAAGAGCTTATTTTGAGACTGAAAAGAAGCATTTTACAATTCTTGATGCCCCTGGACACAAAAGTTTTGTTCCAAACATGATTGGTGGGGCTGCTCAAGCTGACCTCGCTGTATTGGTCATTTCTGCACGTAAAGGCGAATTCGAAACGGGTTTCGACAGAGGAGGACAAACTCGTGAACATGCGATGTTAGCTAAAACAGCTGGAGTGAAACATTTGGTAGCACTTGTAAACAAGATGGATGATCCAACAGTTAACTGGGATGAGAAAAGATATAATGAATGTCGAGACAAAATTTTGCCTTATCTTAAGAAATTGGGTTTCAATACAGCGAAAGACCTATCCTTCCTTCCTGTTTCCGGCCAAACTGGACAAGGTTTATTAGAACGACTAACTGAAGATGTATGCCCATGGTACCGTGGACCATCTTTTATCCAACTCATCGACGAGCTTCCGTCTCTAAACCGTAAGATCGATGGTCCATTTATTATGCCTGTTGTTGATAAATATAAGGACATGGGAACGGTCCTCATGGGCAAGGTGGAAGCGGGAACTACACGTAAATCCAGTACATTATTTCTGATGCCAAACAGGGTGCAAGTAACAGTTGATCAACTTTGGTCCGATGACATTGAGGTAACCTCTATTGGGCCTGGTGAAAATGTCAAAGTAAAACTTAAAGGAATTGAAGAAGAAGATGTATCTCCTGGTTTTGTTCTTTGCGACGTAACCGAACCGATTACGACAGGAAGAGTTTTCGATGCCCAAGTTGTGATTCTAGAACACAAATCCATCATTTGTGCTGGTTACTCTGCTGTTATGCACATACACTGTGCTGCTGAAGAAATTACTGTTAAGGCTTTGATTTGTTTGGTTGACAAAAAGACTGGAGAGAAGTCGAAAACGAGACCACGCTTTGTGAAACAAGATCAGGTTGCTATTATGAGGATAGAATGTGCAGGAGTTATATGCTTAGAACCATTCAAAAAATTTGCTCAAATGGGCAGGTTCACATTAAGAGACGAAAATAAAACCATTGCGATCGGAAAAGTTTTGAAGGTGATTGAGTAA

Protein

MSNNGAPDSWENEAEIIGEKGCGDGGGESSDGGAASASPRVEEPPPTTASVPPDVSPTADSWEVEADDALLTPEENNEPEEEELDTQVGNTNPNEDGELTKKIPKKKPPRVEDTRSKKEHVNVVFIGHVDAGKSTIGGQIMSLTGMVDKRTLEKYEREAREKSRESWYLSWALDTNQEERDKGKTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGAAQADLAVLVISARKGEFETGFDRGGQTREHAMLAKTAGVKHLVALVNKMDDPTVNWDEKRYNECRDKILPYLKKLGFNTAKDLSFLPVSGQTGQGLLERLTEDVCPWYRGPSFIQLIDELPSLNRKIDGPFIMPVVDKYKDMGTVLMGKVEAGTTRKSSTLFLMPNRVQVTVDQLWSDDIEVTSIGPGENVKVKLKGIEEEDVSPGFVLCDVTEPITTGRVFDAQVVILEHKSIICAGYSAVMHIHCAAEEITVKALICLVDKKTGEKSKTRPRFVKQDQVAIMRIECAGVICLEPFKKFAQMGRFTLRDENKTIAIGKVLKVIE

Uniprot

H9JCI5   Q2F6A7   Q1HPV8   A0A0N9JT18   A0A2H1VE87   S4PYF1   + More
A0A2A4JPB4   A0A2A4JNC6   A0A212EKK4   A0A194QB90   G4XH95   I4DJB5   T1PBZ3   A0A0K8UF41   A0A034V7Y9   A0A0A1X0L8   A0A0K8TS89   A0A1I8NMN3   B4MWM0   B3MNT8   A0A0K8TY45   W8B973   B0WIP8   A0A1Q3F0L0   A0A182ILR6   A0A0M4EGV1   U5ESN4   A0A182F5L6   A0A1Q3F0M1   A0A023EX44   A0A1Q3F0J0   B4P217   D6WYX3   A0A182X0P8   A0A182MG58   A0A182TIN1   W5JJ15   A0A1A9XW05   A0A1A9UH81   A0A1B0AP47   A0A182VUK2   A0A2M4BHY0   D3TPW5   A0A182UXT5   A0A182P9G9   A0A2M4A3S8   A0A1A9WZQ6   A0A1S4H0R9   A0A2M3YZV6   A0A0R1DMC0   A0A2M4A3U7   A0A182L6I2   A0A182HGD3   A0A182RAW1   A0A2M3Z0E4   Q7PVE0   A0A0P8XGG6   B4Q3T5   Q9VK85   A0A336MN79   A0A1W4V334   A0A182QYE3   A0A182YNH0   J9HT92   B4MDK0   B4IE93   A0A3B0JTZ7   A0A182NES1   B3N3U3   A0A2M4A510   A0A1L8DSA6   M9PD08   A0A084VM72   A0A0J9R120   B4KJ37   A0A1L8DS51   A0A1J1HIL8   B4G8T5   B5DI84   P91944   B4JCQ0   A0A1Y1K4J9   A0A0R3NYV6   A0A0Q9WTI0   A0A0Q9WLH8   E0VHG4   A0A0R3NZL7   A0A0Q9XGR0   A0A0R3NY16   E2C1M8   A0A151WTA9   A0A195EHV7   F4W8M8   A0A158NKC8   A0A195FCE0   A0A151I942   A0A2A3EN97   V9ID54   A0A0M9A308   A0A088A152  

Pubmed

19121390    26325588    23622113    22118469    26354079    22651552    + More
25315136    25348373    25830018    26369729    17994087    24495485    24945155    17550304    18362917    19820115    20920257    23761445    20353571    12364791    20966253    22936249    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25244985    17510324    24438588    15632085    23185243    9556329    28004739    20566863    20798317    21719571    21347285   

EMBL

BABH01039071    DQ311165    ABD36110.1    DQ443294    ABF51383.1    KT363835    + More
ALG36654.1    ODYU01002084    SOQ39145.1    GAIX01003398    JAA89162.1    NWSH01000921    PCG73538.1    PCG73537.1    AGBW02014242    OWR42032.1    KQ459232    KPJ02808.1    JF811450    AEP43799.1    AK401383    BAM18005.1    KA645635    AFP60264.1    GDHF01027042    JAI25272.1    GAKP01021067    JAC37885.1    GBXI01009625    GBXI01004069    JAD04667.1    JAD10223.1    GDAI01000592    JAI17011.1    CH963857    EDW76509.2    CH902620    EDV32125.1    GDHF01032937    JAI19377.1    GAMC01016820    GAMC01016819    JAB89736.1    DS231951    EDS28625.1    GFDL01013950    JAV21095.1    CP012523    ALC40042.1    GANO01003162    JAB56709.1    GFDL01013940    JAV21105.1    GAPW01000659    JAC12939.1    GFDL01013970    JAV21075.1    CM000157    EDW88188.1    KQ971363    EFA09020.1    AXCM01005439    ADMH02001356    ETN62875.1    JXJN01001138    GGFJ01003525    MBW52666.1    CCAG010023607    EZ423467    ADD19743.1    GGFK01002084    MBW35405.1    AAAB01008984    GGFM01001051    MBW21802.1    KRJ97629.1    GGFK01002104    MBW35425.1    APCN01004215    APCN01004216    GGFM01001157    MBW21908.1    EAA14751.3    KPU73797.1    CM000361    CM002910    EDX04810.1    KMY89921.1    AE014134    AY070979    AAF53194.1    AAL48601.1    AGB92950.1    AHN54388.1    UFQS01001563    UFQT01001563    SSX11454.1    SSX31021.1    AXCN02000844    CH477657    EJY57863.1    CH940661    EDW71261.1    CH480831    EDW45920.1    OUUW01000004    SPP78950.1    CH954177    EDV58795.1    GGFK01002566    MBW35887.1    GFDF01004879    JAV09205.1    AGB92951.1    ATLV01014581    KE524975    KFB39066.1    KMY89922.1    CH933807    EDW11399.1    GFDF01004880    JAV09204.1    CVRI01000001    CRK86318.1    CH479180    EDW28765.1    CH379060    EDY70024.1    KRT04036.1    U88868    AAC24943.1    CH916368    EDW04214.1    GEZM01097359    JAV54256.1    KRT04035.1    KRF85591.1    KRF85592.1    DS235170    EEB12820.1    KRT04038.1    KRG02675.1    KRT04037.1    GL451937    EFN78204.1    KQ982762    KYQ51027.1    KQ978881    KYN27741.1    GL887908    EGI69519.1    ADTU01018780    KQ981693    KYN37709.1    KQ978323    KYM95119.1    KZ288215    PBC32676.1    JR038424    AEY58249.1    KQ435776    KOX74893.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000095301    UP000095300    + More
UP000007798    UP000007801    UP000002320    UP000075880    UP000092553    UP000069272    UP000002282    UP000007266    UP000076407    UP000075883    UP000075902    UP000000673    UP000092443    UP000078200    UP000092460    UP000075920    UP000092444    UP000075903    UP000075885    UP000091820    UP000075882    UP000075840    UP000075900    UP000007062    UP000000304    UP000000803    UP000192221    UP000075886    UP000076408    UP000008820    UP000008792    UP000001292    UP000268350    UP000075884    UP000008711    UP000030765    UP000009192    UP000183832    UP000008744    UP000001819    UP000001070    UP000009046    UP000008237    UP000075809    UP000078492    UP000007755    UP000005205    UP000078541    UP000078542    UP000242457    UP000053105    UP000005203   

PRIDE

H9JCI5    Q2F6A7    Q1HPV8    Q9VK85    M9PD08    P91944    + More
A0A088A152   

Pfam

PF07145   PAM2        + More
PF00009   GTP_EFTU
PF03143   GTP_EFTU_D3
PF03144   GTP_EFTU_D2

Interpro

IPR000795   TF_GTP-bd_dom        + More
IPR009001   Transl_elong_EF1A/Init_IF2_C       
IPR004160   Transl_elong_EFTu/EF1A_C       
IPR031157   G_TR_CS       
IPR027417   P-loop_NTPase       
IPR003285   Sup35       
IPR009000   Transl_B-barrel_sf       
IPR009818   Ataxin-2_C       
IPR004161   EFTu-like_2       

SUPFAM

SSF50465   SSF50465        + More
SSF50447   SSF50447       
SSF52540   SSF52540       

ProteinModelPortal

H9JCI5   Q2F6A7   Q1HPV8   A0A0N9JT18   A0A2H1VE87   S4PYF1   + More
A0A2A4JPB4   A0A2A4JNC6   A0A212EKK4   A0A194QB90   G4XH95   I4DJB5   T1PBZ3   A0A0K8UF41   A0A034V7Y9   A0A0A1X0L8   A0A0K8TS89   A0A1I8NMN3   B4MWM0   B3MNT8   A0A0K8TY45   W8B973   B0WIP8   A0A1Q3F0L0   A0A182ILR6   A0A0M4EGV1   U5ESN4   A0A182F5L6   A0A1Q3F0M1   A0A023EX44   A0A1Q3F0J0   B4P217   D6WYX3   A0A182X0P8   A0A182MG58   A0A182TIN1   W5JJ15   A0A1A9XW05   A0A1A9UH81   A0A1B0AP47   A0A182VUK2   A0A2M4BHY0   D3TPW5   A0A182UXT5   A0A182P9G9   A0A2M4A3S8   A0A1A9WZQ6   A0A1S4H0R9   A0A2M3YZV6   A0A0R1DMC0   A0A2M4A3U7   A0A182L6I2   A0A182HGD3   A0A182RAW1   A0A2M3Z0E4   Q7PVE0   A0A0P8XGG6   B4Q3T5   Q9VK85   A0A336MN79   A0A1W4V334   A0A182QYE3   A0A182YNH0   J9HT92   B4MDK0   B4IE93   A0A3B0JTZ7   A0A182NES1   B3N3U3   A0A2M4A510   A0A1L8DSA6   M9PD08   A0A084VM72   A0A0J9R120   B4KJ37   A0A1L8DS51   A0A1J1HIL8   B4G8T5   B5DI84   P91944   B4JCQ0   A0A1Y1K4J9   A0A0R3NYV6   A0A0Q9WTI0   A0A0Q9WLH8   E0VHG4   A0A0R3NZL7   A0A0Q9XGR0   A0A0R3NY16   E2C1M8   A0A151WTA9   A0A195EHV7   F4W8M8   A0A158NKC8   A0A195FCE0   A0A151I942   A0A2A3EN97   V9ID54   A0A0M9A308   A0A088A152  

PDB

4D61     E-value=0,     Score=1700

KEGG

692806    K03267 peptide chain release factor subunit 3 | (RefSeq) Elf; Ef1alpha-like factor

PATHWAY

03015    mRNA surveillance pathway - Bombyx mori (domestic silkworm)

GO

GO:0000288   GO:0005525   GO:0003924   GO:0003747   GO:0003746   GO:0006415   GO:0018444   GO:0005829   GO:0006412   GO:0002184   GO:0008079   GO:0004781   GO:0016021   GO:0006418   GO:0003723   GO:0046872   GO:0003824  

Length:

544

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02371

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00184

outside

1  -  544

 

 

Pi

172.387513

Theta

185.573906

Tajima's D

-0.554378

CLR

170.61169

CSRT

0.227688615569222

Interpretation

Uncertain