Silkworm Genome Informatics Database

Gene

KWMTBOMO10328

Pre Gene Modal

BGIBMGA007240

Annotation

PREDICTED:_transducin_beta-like_protein_3_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr17(+):7685673-7723659 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 2.64

CDS

ATGTCAAATTTAAAAGAAATATATGAGAAAAGTGCAGAGTTTACTGCATTTTATACAGGTGGTGATATACAGTGGACAAATGATGGCTTACAAATGCTTTGCCTATGTGATGAAGCTATTAAGGTGGTTGAAGTCGACACTCTAATCACTTCTCTTATTATTGGCGAAACTGAGGAAGATGCAGAAAATGACCAGATTTATACATTTAAAATATCACATAGTAATCAAAGTATTGTTACTGCACACAAAAGTGGCCTAATTAAAATGTGGGACAAAGAAACTGGAGTCCAACTAAAAATTTGGAGATCAAGCCATAAAGGACCTGTTGTGAAGTTAGCCTTTGATTCAACAGATGAAAATATTGCTTCAGGAGGTTCCGACGGTAATGTGAGACTGTGGGATGTAGGACATAATACCTGTACTAGCAGTCTTCGTGGAGCTATGGGTGTTTTCTCTGTGTTAGAGTATCATCCAGATTCTTCTAAACAATTAGTATTTGGAGCAGCAGATGATACAAAGATTAGATCCTGGTGTTCTAAAACTGGTAAAGAGCAATTAGTATATTCAGGTCATTTTAGTAAGGTAACTGCTTTGCTATTCACACTTGATGGTAAATACATGGTCAGCTCTGGGAGGGACAGAGTACTCATATTGTGGGATTTAAATGTTAGCAAAGCTCTTAAAGTTGTTCCTGTGTATGAAGGAATTGAATCCTGCATTCTCTTACCACCTTCATTTAAAATCCCAAATTTTAATAAAAAGCTGGAAACTGAAGGGGTTTATGTTGCTTGTGCTGGAGAAAAAGGAATTGTTAAAGTATGGAATTTGTCAATGAGCCGACTCATGTTTGAACAAATCAATAGTTTAGTATCCCCGTCAACTGAAGAAGGAGGGCTGTCAATAACGCACCTACTATATAATCAAGCAAGAAATATGGTCTCTGTAGTGACAGTTGATCATAACATTATAATACATGACCTAGAAACATTTGACTCTGTGAAACAGATGATTGGTTTCACTGATGAAGTTCTTGACATAATATTTTTGGGAAAAAACGAGAACCATATAATTGTTGCCACAAATAGCCAAGATCTGAAGTATTATGATTTAGAAACTATGAATTGTCAAATTGTTAAAGGTCACACAGATATAGTGCTCTCCTTAGCAAACTTTCCAACTAAACTTGAAATGTTTGTTTCATCAAGTAAAGACAATAGCGTTCGATTGTGGCTTCAAACACCAAACAACACTATTCATTGCCTTGCAGTTGGAACTCGCCATACTGCTTCTGTTGGGTCTGTTTACACTTCACAAACATCCGATGATTTCTTTACCTCGGTTAGTCAAGATAATTGCATAAAAGTTTGGACTGTATGTAAGCCTGCAGAAAAATGTGTAGAACAAAATCTTAAATGTAGTCACACTGAATTAGCTCACCAAATGGACATTAATTGTGTTGCAGTATCACCCAATGATAAAATGATAGCTACTGGTTCACAAGATAAAACTGCAAAGATTTGGGCAGAAGACTTGACACTGTTAGGTGTATTAAAAGGTCACAGAAGGGGAGTGTGGTGTGTAAGATTTTCTCCTGTCGATCAAGTAGTGCTAACATCTTCAGCTGACAGTTCCATTAAATTATGGTCCATAAGTGATTTAAGTTGCCTAAAAACTTTCGAAGGTCATGAAAGTTCTGTTCTGAAAGTTGAGTTCATTAGTAAAGGCCAACAGATTTTATCCAGTGGAGCTGATGGATTATTAAAGTTATGGACTATCAAAACATCAGAAAGTAAAATGTCATTAGACAACCATGATGGTAAAGTGTGGTCATTAGCTATATCCAAAAATGAATCATACATAATCACAGGTGGTTCTGATTCAAAATTAGTGAAATTAAAAGATGTAACATTGGAACAAAGAGAAAGAAGGACCAAGGAGAGAGAAGCACTGATTTTGCAAGAACAGGAATTAAATAACTTACTTCATGACAAAAAATTACTCAAAGCTTTAAAATTAGCATTACGAATGGACAGGCCACTGCACGTGTTAAAAATAACCGCTCGCGATTTCGCGCCACTGCGCGGATTATATGTTTATTTCATCATGATTAAAAAAATCACAATCTATGCCCTGCTGACGGTTTTCATTGAAAATTCTCAAGGACAAAAATCGCAACAGATAGCGCCCTTAGAATGTCCAAGTTTAGACAGCGGAGACAGTTTTACTCAGTCGGAGTTCTTATCAAGACTCGCAAACGAATGCCGCTACGACCGGCTACTGCTGCCTACCTATCAGACCGGTGACGTCGTCTACGTCCATGCCAGCGCCTACGTTTATTTCATTCAACCAGCAGAAGCACACGATTTGAATTTTAAACTTCACTTCCTTCTGCAACTACGATGGACGGACCCGCGCCTAGCGTACACACTCTACTCTCCGAAAAGATCTAAAATCATAGGTGAAAATGATCTGAAACAAAGAATATGGGTGCCACATCTATACATGTCGAACGAACAGTCGTCGAGTCTCATGGGAACCGACAGTAAAGACGTTCTCATTTCAATCGCTCCCGACGGTGAAGTGCTTTTCAGCAGGCGAATGCAGGCAGTGTTGTACTGTTGGATGAATCTACAGAAATTCCCCTTTGACGATCAGACATGCTCTATGAACTTGGAAAGCTGGAAATATAATGCATCGATTCTACGTTTAATGTGGGAAAAGGATAATCCAGTTCGCTTATCATCGGAACTACACCTGACAGAATATTCTCTCATGGATTTTTGGACGAACGAATCTGTTGTCAGAGGCGATATAGCCAACATGCGTCTTGGTGGAGCGGGTAATTATAGCGCCTTAAAATTCACATTCAAACTTGGTCGCGAGGTCGGTTACTATCTCATGGATTATTTTATTCCATCGATGATGATAGTGGCAATGTCGTGGGTTACATTTTGGCTACAAGCGGACGCATCAGCACCAAGAATAACTTTAGGTACAAGCACTATGTTATCGTTTATAACACTGGCATCATCGCAAGCGAAGACACTACCTAAAGTTTCATATATCAAAGCTAGCGAGGTCTGGTTCTTAGGCTGCACCGGTTTCATCTTCTCAGCTCTTGTAGAATTTGCTTTTGTCAACACCATTTGGAGAAGAAAGAAAGCGGTAAACTTAAAAAAGGTGAATAGCAAATACATTTTGAAGAGCACGCTTACTCCGCGTTTGGCCCGTAAAGAACTTCAAAAAGAAATACAAGAATCTTCACCGCAACTTTCGAAATCGAGATCTTGCTCGTCGCTGCAGCAGGAGGGCAGCTGCAACGACCCAGCCGGTCCCGGTTACAACAACTACCTCACTGTGCACCCGAACAGGGAATTGTAA

Protein

MSNLKEIYEKSAEFTAFYTGGDIQWTNDGLQMLCLCDEAIKVVEVDTLITSLIIGETEEDAENDQIYTFKISHSNQSIVTAHKSGLIKMWDKETGVQLKIWRSSHKGPVVKLAFDSTDENIASGGSDGNVRLWDVGHNTCTSSLRGAMGVFSVLEYHPDSSKQLVFGAADDTKIRSWCSKTGKEQLVYSGHFSKVTALLFTLDGKYMVSSGRDRVLILWDLNVSKALKVVPVYEGIESCILLPPSFKIPNFNKKLETEGVYVACAGEKGIVKVWNLSMSRLMFEQINSLVSPSTEEGGLSITHLLYNQARNMVSVVTVDHNIIIHDLETFDSVKQMIGFTDEVLDIIFLGKNENHIIVATNSQDLKYYDLETMNCQIVKGHTDIVLSLANFPTKLEMFVSSSKDNSVRLWLQTPNNTIHCLAVGTRHTASVGSVYTSQTSDDFFTSVSQDNCIKVWTVCKPAEKCVEQNLKCSHTELAHQMDINCVAVSPNDKMIATGSQDKTAKIWAEDLTLLGVLKGHRRGVWCVRFSPVDQVVLTSSADSSIKLWSISDLSCLKTFEGHESSVLKVEFISKGQQILSSGADGLLKLWTIKTSESKMSLDNHDGKVWSLAISKNESYIITGGSDSKLVKLKDVTLEQRERRTKEREALILQEQELNNLLHDKKLLKALKLALRMDRPLHVLKITARDFAPLRGLYVYFIMIKKITIYALLTVFIENSQGQKSQQIAPLECPSLDSGDSFTQSEFLSRLANECRYDRLLLPTYQTGDVVYVHASAYVYFIQPAEAHDLNFKLHFLLQLRWTDPRLAYTLYSPKRSKIIGENDLKQRIWVPHLYMSNEQSSSLMGTDSKDVLISIAPDGEVLFSRRMQAVLYCWMNLQKFPFDDQTCSMNLESWKYNASILRLMWEKDNPVRLSSELHLTEYSLMDFWTNESVVRGDIANMRLGGAGNYSALKFTFKLGREVGYYLMDYFIPSMMIVAMSWVTFWLQADASAPRITLGTSTMLSFITLASSQAKTLPKVSYIKASEVWFLGCTGFIFSALVEFAFVNTIWRRKKAVNLKKVNSKYILKSTLTPRLARKELQKEIQESSPQLSKSRSCSSLQQEGSCNDPAGPGYNNYLTVHPNREL

Similarity

Belongs to the ligand-gated ion channel (TC 1.A.9) family.

Uniprot

A0A195EZ31 A0A151XHR8 A0A195BN49 A0A0M8ZSD7

EMBL

KQ981905 KYN33386.1 KQ982130 KYQ59760.1 KQ976432 KYM87458.1 + More
KQ435908 KOX68996.1

Proteomes

UP000078541 UP000075809 UP000078540 UP000053105

Pfam

PF00400   WD40        + More
PF08625   Utp13
PF02931   Neur_chan_LBD
PF02932   Neur_chan_memb

Interpro

IPR036322   WD40_repeat_dom_sf        + More
IPR019775   WD40_repeat_CS
IPR018000   Neurotransmitter_ion_chnl_CS
IPR020472   G-protein_beta_WD-40_rep
IPR006202   Neur_chan_lig-bd
IPR006028   GABAA/Glycine_rcpt
IPR001680   WD40_repeat
IPR006029   Neurotrans-gated_channel_TM
IPR036734   Neur_chan_lig-bd_sf
IPR017986   WD40_repeat_dom
IPR036719   Neuro-gated_channel_TM_sf
IPR013934   SSU_processome_Utp13
IPR015943   WD40/YVTN_repeat-like_dom_sf
IPR011047   Quinoprotein_ADH-like_supfam
IPR006201   Neur_channel

SUPFAM

SSF50978   SSF50978        + More
SSF63712   SSF63712
SSF90112   SSF90112
SSF50998   SSF50998

Gene 3D

2.130.10.10 2.70.170.10

ProteinModelPortal

A0A195EZ31 A0A151XHR8 A0A195BN49 A0A0M8ZSD7

PDB

5OQL E-value=2.6414e-63, Score=618

KEGG

101736004 K14555 U3 small nucleolar RNA-associated protein 13 | (RefSeq) transducin beta-like protein 3

PATHWAY

03008 Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0032040 GO:0005886 GO:0016021 GO:0004888 GO:0005230 GO:0006364 GO:0006810 GO:0016020 GO:0005515 GO:0006811 GO:0006418 GO:0003723 GO:0046872 GO:0003824 GO:0005216 GO:0034220

Length:

1126

Number of predicted TMHs:

3

Exp number of AAs in TMHs:

66.98941

Exp number, first 60 AAs:

0.00054

Total prob of N-in:

0.00086

outside

1 - 961

TMhelix

962 - 984

inside

985 - 990

TMhelix

991 - 1013

outside

1014 - 1027

TMhelix

1028 - 1050

inside

1051 - 1126

Pi

186.843082

Theta

179.676692

Tajima's D

-0.782112

CLR

101.069309

CSRT

0.179291035448228

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics