Gene

KWMTBOMO10325  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007222

Annotation

RPA43_N_protein_[Bombyx_mori]

Location

Bomo_Chr17(+):7656523-7657617      View in EpiBrowser

Full name

DNA-directed RNA polymerase I subunit RPA43      

Alternative Name

Twist neighbor protein

Location in the cell

Cytoplasmic   Reliability : 2.528

CDS

ATGTCTAAAATCATAAAATTTGACCTACGAGAGTTAAAACAGTTGGCAAACGACAAAAATTCTTGTTTGGTTGTAAAAAAGATTACACAAAATCTGGCTTTACAGCCATGGTGCCTTGGAAATATTAAAGAATCTATAACAAACTTATTAGATTATAAAGTTGGTAAATTTGATAAAGAGTTGAACGGTGTCTTAGTAAGCTATAAAAATCCTTGTATACTTCAGAATGTTGGCACTATACGCAATGATAATGCGGATATACATTTCCAAGTTCAAGCGGATTACTTCATATTTCAACCATACATAGGTGCAAAATTAACTGGTTTAGTTAACAAAAAGTGTTCCACACATTTAAGTGTCCTAGTACATAGAGTTTTTAATGTGGTCATACCACAGCCAACAGAAGAGCCTGGAGACAAGTGGATCGGATTTAGTGTTAAAGAGGGCCAAGAGGTCACTTTTAGAATTGCTGCCTTAGACCTTTACGGAGCTCTTCCTTACATTAGAGGTGAATTAGATGAGAGGAGTCTAAAACTAGAAAACTATGAAATTGATGACGATATTGAAGTTTCTCAACCATTAAATGTACCTTATGTGATTTTTGATAAAACTAAGCCTAGTGTAAAATAA

Protein

MSKIIKFDLRELKQLANDKNSCLVVKKITQNLALQPWCLGNIKESITNLLDYKVGKFDKELNGVLVSYKNPCILQNVGTIRNDNADIHFQVQADYFIFQPYIGAKLTGLVNKKCSTHLSVLVHRVFNVVIPQPTEEPGDKWIGFSVKEGQEVTFRIAALDLYGALPYIRGELDERSLKLENYEIDDDIEVSQPLNVPYVIFDKTKPSVK

Subunit

Component of the RNA polymerase I (Pol I) complex consisting of at least 13 subunits (By similarity). Interacts with RRN3/TIF-IA.

Similarity

Belongs to the eukaryotic RPA43 RNA polymerase subunit family.

Keywords

Complete proteome   DNA-directed RNA polymerase   Nucleus   Phosphoprotein   Reference proteome   Transcription  

Feature

chain  DNA-directed RNA polymerase I subunit RPA43

Uniprot

D3JSV9   A0A2H1VKS5   A0A2A4JKN2   A0A1E1W0P4   A0A212EZS8   A0A194QCQ0   + More
A0A1E1W333   S4PY05   A0A0L7LFB6   A0A067R3D0   A0A1Y1MRS7   A0A232EL26   A0A087ZYI6   A0A0L7QWV4   A0A2A3EB44   U5ETT7   A0A1B6I1S1   A0A310SHG6   A0A023EXR4   A0A0V0G874   A0A0P4VK45   A0A069DZ41   A0A154NZB3   H3AQL8   E9H7S0   E2A3E9   E9J9M9   A0A0M8ZSW5   A0A1B6DAZ5   G7P0S2   F7A560   A0A2K6DJH1   A0A2K5VT47   H9Z6D5   A0A2K6MTI5   A0A2K6QW86   G7MLQ6   H2PMQ7   A0A096NPL9   A0A2J8VEB4   A0A2K6ABF5   A0A2K5MG82   A0A0D9RM70   F6WGE7   A0A2K5JMW9   G9KW12   A0A2Y9DMM2   A0A2K5D818   A0A2K5QMR4   G5BZJ2   A0A2Y9H1J7   A0A2K6SZF5   U6DI23   A0A2R9AZY1   H2QU84   Q3B726   A0A1A8I2S0   U4UTD8   K7CLQ7   G3RU18   W5PJ88   A0A0J7NBY6   A0A3Q0CVH2   A0A2Y9F6A3   A0A2U3X0R0   N6TDJ6   G3T2G1   A0A341AXK8   A0A2I3HSQ3   A0A026W1Z1   A0A1B0GLB8   A0A1A8PXX6   A0A1L8FVY7   A0A0A9ZD88   A0A1S3AB57   Q6GLJ2   A0A1B0D988   A0A2Y9PJS7   A0A2U3V9L8   A0A340X8V4   M3X5H4   A0A1A8CEU4   A0A1A8D5V7   A0A3P4NGT7   M3YR84   H0X025   A0A1A7ZZN7   A0A383YQD0   F1NJS0   A0A1A8HHH6   A0A3L8DM15   A0A091CR13   F7C1U5   A0A158NMM4   A0A2P4TF30  

Pubmed

19121390    22118469    26354079    23622113    26227816    24845553    + More
28004739    28648823    25474469    27129103    26334808    9215903    21292972    20798317    21282665    22002653    17431167    25319552    25362486    23236062    21993625    22722832    16136131    14702039    12690205    15489334    12438708    12393749    17081983    18220336    18669648    20068231    21406692    23186163    23537049    22398555    20809919    28071753    24508170    27762356    25401762    17975172    15592404    30249741    19892987    21347285   

EMBL

BABH01041058    GU288816    ADB78703.1    ODYU01003098    SOQ41423.1    NWSH01001098    + More
PCG72617.1    GDQN01010583    JAT80471.1    AGBW02011226    OWR47006.1    KQ459232    KPJ02760.1    GDQN01009705    JAT81349.1    GAIX01004128    JAA88432.1    JTDY01001423    KOB73896.1    KK853024    KDR12339.1    GEZM01023394    JAV88412.1    NNAY01003674    OXU19018.1    KQ414710    KOC63019.1    KZ288297    PBC28910.1    GANO01002634    JAB57237.1    GECU01026837    JAS80869.1    KQ766175    OAD53725.1    GBBI01004662    JAC14050.1    GECL01001801    JAP04323.1    GDKW01003749    JAI52846.1    GBGD01001300    JAC87589.1    KQ434785    KZC05016.1    AFYH01032788    AFYH01032789    AFYH01032790    GL732601    EFX72255.1    GL436428    EFN72013.1    GL769399    EFZ10425.1    KQ435912    KOX68859.1    GEDC01014431    JAS22867.1    CM001278    EHH52284.1    JSUE03028627    JSUE03028628    JSUE03028629    AQIA01046942    JU474697    AFH31501.1    JU333411    JV046457    CM001255    AFE77166.1    AFI36528.1    EHH17460.1    ABGA01248136    ABGA01248137    AHZZ02022916    NDHI03003421    PNJ55852.1    AQIB01018527    JP020493    AES09091.1    JH172608    EHB14703.1    HAAF01010806    CCP82630.1    AJFE02088144    AACZ04068668    GABC01010615    GABF01002231    GABE01002144    JAA00723.1    JAA19914.1    JAA42595.1    AK301329    CH236948    CH471073    BC014574    BC130298    BC130300    BK000492    HAED01005180    SBQ91210.1    KB632355    ERL93385.1    GABD01005836    NBAG03000259    JAA27264.1    PNI57982.1    CABD030050087    AMGL01086297    LBMM01007058    KMQ90080.1    APGK01041853    KB740998    ENN75818.1    ADFV01001490    ADFV01001491    KK107485    EZA50082.1    AJWK01034733    HAEG01009962    SBR85867.1    CM004476    OCT75767.1    GBHO01000392    GBRD01005891    JAG43212.1    JAG59930.1    BC074493    AAH74493.1    AJVK01004276    AANG04003224    HADZ01013637    SBP77578.1    HAEA01001145    SBQ29625.1    CYRY02020758    VCW97156.1    AEYP01012949    AEYP01012950    AAQR03057260    HADY01009373    SBP47858.1    AADN05000033    HAEC01014630    SBQ82847.1    QOIP01000006    RLU21421.1    KN124680    KFO20627.1    ADTU01020592    ADTU01020593    PPHD01000992    POI34975.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000037510    UP000027135    + More
UP000215335    UP000005203    UP000053825    UP000242457    UP000076502    UP000008672    UP000000305    UP000000311    UP000053105    UP000009130    UP000006718    UP000233120    UP000233100    UP000233180    UP000233200    UP000001595    UP000028761    UP000233140    UP000233060    UP000029965    UP000008225    UP000233080    UP000248480    UP000233020    UP000233040    UP000006813    UP000248481    UP000233220    UP000240080    UP000002277    UP000005640    UP000030742    UP000001519    UP000002356    UP000036403    UP000189706    UP000248484    UP000245340    UP000019118    UP000007646    UP000252040    UP000001073    UP000053097    UP000092461    UP000186698    UP000079721    UP000092462    UP000248483    UP000245320    UP000265300    UP000011712    UP000000715    UP000005225    UP000261681    UP000000539    UP000279307    UP000028990    UP000002281    UP000005205   

PRIDE

D3JSV9    Q3B726   

Pfam

PF03876   SHS2_Rpb7-N        + More
PF17875   RPA43_OB

Interpro

IPR036898   RNA_pol_Rpb7-like_N_sf        + More
IPR005576   Rpb7-like_N       
IPR041178   RPA43_OB       
IPR041901   RNAP_I_Rpa43_N       

Gene 3D

3.30.1490.120    

CDD

cd04328  RNAP_I_Rpa43_N

ProteinModelPortal

D3JSV9   A0A2H1VKS5   A0A2A4JKN2   A0A1E1W0P4   A0A212EZS8   A0A194QCQ0   + More
A0A1E1W333   S4PY05   A0A0L7LFB6   A0A067R3D0   A0A1Y1MRS7   A0A232EL26   A0A087ZYI6   A0A0L7QWV4   A0A2A3EB44   U5ETT7   A0A1B6I1S1   A0A310SHG6   A0A023EXR4   A0A0V0G874   A0A0P4VK45   A0A069DZ41   A0A154NZB3   H3AQL8   E9H7S0   E2A3E9   E9J9M9   A0A0M8ZSW5   A0A1B6DAZ5   G7P0S2   F7A560   A0A2K6DJH1   A0A2K5VT47   H9Z6D5   A0A2K6MTI5   A0A2K6QW86   G7MLQ6   H2PMQ7   A0A096NPL9   A0A2J8VEB4   A0A2K6ABF5   A0A2K5MG82   A0A0D9RM70   F6WGE7   A0A2K5JMW9   G9KW12   A0A2Y9DMM2   A0A2K5D818   A0A2K5QMR4   G5BZJ2   A0A2Y9H1J7   A0A2K6SZF5   U6DI23   A0A2R9AZY1   H2QU84   Q3B726   A0A1A8I2S0   U4UTD8   K7CLQ7   G3RU18   W5PJ88   A0A0J7NBY6   A0A3Q0CVH2   A0A2Y9F6A3   A0A2U3X0R0   N6TDJ6   G3T2G1   A0A341AXK8   A0A2I3HSQ3   A0A026W1Z1   A0A1B0GLB8   A0A1A8PXX6   A0A1L8FVY7   A0A0A9ZD88   A0A1S3AB57   Q6GLJ2   A0A1B0D988   A0A2Y9PJS7   A0A2U3V9L8   A0A340X8V4   M3X5H4   A0A1A8CEU4   A0A1A8D5V7   A0A3P4NGT7   M3YR84   H0X025   A0A1A7ZZN7   A0A383YQD0   F1NJS0   A0A1A8HHH6   A0A3L8DM15   A0A091CR13   F7C1U5   A0A158NMM4   A0A2P4TF30  

PDB

2RF4     E-value=0.00190789,     Score=94

KEGG

100379192    K03004 DNA-directed RNA polymerase I subunit RPA43 | (RefSeq) RPA43_N; RPA43_N protein

PATHWAY

03020    RNA polymerase - Bombyx mori (domestic silkworm)

GO

GO:0006351   GO:0003899   GO:0005736   GO:0006360   GO:1990830   GO:0006363   GO:0005654   GO:0045815   GO:0006362   GO:0006361   GO:0006468   GO:0016021   GO:0015935   GO:0004812   GO:0006418   GO:0003723   GO:0046872   GO:0003824  

Subcellular location

  

Length:

209

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00494

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.10547

outside

1  -  209

 

 

Pi

134.731947

Theta

154.15315

Tajima's D

-0.75141

CLR

14.741396

CSRT

0.183590820458977

Interpretation

Uncertain