Silkworm Genome Informatics Database

Gene

KWMTBOMO10322

Pre Gene Modal

BGIBMGA007221

Annotation

ATP-binding_cassette_sub-family_A_ABCA1_[Bombyx_mori]

Location

Bomo_Chr17(+):7568413-7608929 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 2.898

CDS

ATGAGATATTTAGTGCCGCCCAAAGCAATACCGGCTAAAACTTACACATCCTTTGATGTCACCTATTTCAATAAGACAAGGGGAAATCTGTCATCAGCTGACATGGTATTGGCATACTCACCAATAAATCAATTGACTGAAAAAGTTGCAATCAATGCTATGGCTGAACTTGCTCGAGATTCAATTGATCCTGATATATTTTTTTTTATATCACTTGCAATTTCATACACTCCTAAAGGATATAAAAATGCCAAAGATATGGAAGCAGCACTAATACAGCCCAATGCTATGAATAGCATTTTGCTTGGTATACAATTTGATGATGAAATCGCTAATGCTACGTCTTGGCCAGATGATATAAAAATAACTTTTAGGTTTCCTGCTGTTATGAGATCGACAACGTCTGATCATCAAATGCAATTGAGCTGGCAAACAAACTTACTATTTCCATTGTTTCCGAATTCTGGTCCACGAGAACCAGATGATCAATATGGAGGAACTTCGCCAGGTTACTTCTCGGAACTATTCTTGTTCATGCAGCACGCAATTTCCAAAAGCATCGTAAAAGAGAAGACCGGGAAAAACATTGATACCAAAATATATCTACAGCGTTTACCTCAACTTGAATCTAGGGTGGATCAGCTACTGTTCATTTTACAAAGATTTGTATCCATAGCTATAATGCTGGGCTTCGTCTATACATTCGTGAATACAGTCAGGGCTGTCACAACTGAGAAAGAACTGCAGCTAAAGGAAACAATGGCAATTATGGGTCTACCGTCTTGGCTGCACTGGTTAGCGTGGTTCATCAAACAATTTTCATTCTTACTTGTGACTATTGTCATAATGGTTATATTGTTTAAGATTCCGTTATCCGAAACTGAAACAGGAGTGTCGTACTCCGTGTTCACCTACACGCCGTGGTCGGTCCTTTTATTCTTTTTGATTCTATTCGTCATTGCATCATTGACATTCTCTTTTATGATAAGCGTTTTCTTCACTAGAGCAAACACCGCCGCGTCTTTTATGGCTCTCATATGGTTCGCAACGTTCGCAGTCTTTATGTTCACCCAAATGATTAACGAGACCATGTCTGCCCCAGTTAAAATAACACTATGTTTGTTATCAAACACTGCCATTGGATACGCATTCCAGATGATTATCATTGCCGAAGGAACGATGCAAGGTTTACAATGGGCCAATTTCTTTGAGCCGATATCGTACAGTGAAAACTTTCAACCGGCTCATGTAGCCTTCATGCTAATATTGGACTCCGTGATGTACATGGCGATCGCCGTGTATGTGGAGAACATACGACCCGGAATGTACGGAGTGCCGTTGCCTTGGTACTATCCTTTCACTGTTAGTTATTGGTGGCCGAACAGAATATCTGACACAAATCGAGAGAAAACATCTGACGATCTTGAATATAATGATGCATTATTGTCGGTGGTACACGACGAGGAACCCAAAGGCGTTCCCATTGGCGTAAACATTCAAAATCTCACAAAAAGATATAAGGGACGGGGGAAAGCTGTCGATAATTTAAATCTTAGACTTTATGAAAACGAGATTACAGTACTTCTGGGTCACAATGGAGCGGGGAAAACGACAACGATTTCTATGTTAACAGGAATGGTCCCTCCAACATCAGGATCGGTAACGATCAATGGATATGATATCGTGACGGAAACGGAAAAAGCTAGACGTTCTCTTGGAATATGTCCTCAACATAATGTACTGTTCCCTGACCTGACCGTAGCTGAACATTTAATTTTTTATTCAAAGCTAAAGGGGATTCCCGAATCAGAAATCAATGAAGAAATAGATCATTTCGTCAAACTTCTCGAATTGGATGACAAGAGGCACGCGGCGGCATCGAGTCTGTCGGGCGGGCAGAAGCGGCGGCTGTCGGCGGGCTGCGCGCTGTGCGGGCGCTCGCGCGTGGTGCTGCTGGACGAGCCCACGTCGGGCCTGGACCCGGCGGCGCGGCGCGCGCTGTGGGACCTGCTGCAGCGCGAGAAGCGCGGCCGCACCGTGCTGCTGACCACGCACTTCATGGACGAGGCGGACGTGCTGGCCGACCGCGTGGCCGTGCTCGCCGCCGGCCGCCTGGCCTGTCTGGGCTCCCCCTACTTCCTCAAGCGCCACTACGGACTCGGCTACAAGCTCGCGCTCGTCAAGGACGCCGCCTGCCAAGTCGATCTTGTCACGGAATTCTTCAAAACATATGTCCCTAATCTCAAGCAAAATTCAAATATCGGCTCAGAATTAACTTACATTTTACCTAGTGAGAGTGTAAGTAAATTTCCCGAAATGCTCAAAAAACTTGAAGAAAAGAAAGAGTCTTTATGTATATCAAGCTACGGGTTATCAGTGACTAGCCTTGAGGAAGTTTTTATGAAAGCTGGAATCGAAGATAACAATGTTGAAATAAAAGAAACTAAAGGAGATATCGAAATGATTGATATGAATGGGGACATGTTGAAGGACAATGAGCCTTTACATAAAACGCAAGGGTTTCATTTACTGAAGAATCACATAAAAGCTATGTTCTTGAAACTGATGTACAACACATTGAGAAATAAGGCACTCGCTGCGATACAAATAATATGGCCAATAATAAACATTATTTTATCGATGATAGTTTCACTATCTTGGAAATTCTTGAATGTATTGCCCCCGCTTGAACTAAGCCTGGAGAGTGGATTTAAAGGAACCGAGACATTAGTATCGCAAGGTAACGATTTGAGAGACGGCAGTACTGAAGCTAATGTCATGATGGCATACAAAGATTATTTCAAACGATCAACGTACCCCGGCTTGAAGTTATTGGATGTCGGAACTTCTAACTTAAAAAACGTCTATTTGAAACTTATCGCAGAAGATCAATCTCGAGTACGATATGAAGATCTAGTGGGAGCTACATTTCGTAATAACAGCATAACAGCCTGGTTCAGTAACTACGGTCTTCATGATTCTGCTATCTCGCTTTCACTAGTCGAGAACGCAATAATTCGTTCTCTGTCACCCAATACAACTTTGACATTTGTCAACCATCCGCTACCATATTCAGTTGAAGGAATGGTTCAAGTAATGTCTACCGGAACAAACACCGCCTTCATGTTTTCTTTTAGCCTGGGATTTTGTATAGCGGTTATAAGCTCTTTTCTGGTTCTCTTTGTAATTAAAGAGCGCATCAGCGGTGCGAAACTTCTCCAAAGAGTATCAGGAGTGCGACCGGTAGTAATGTGGAGTACTGCCCTCATTTGGGATTGGATTTGGTTGTTTCTGAACCACATTTGCATTATAGTCACTATTGCGTGCTTCCAAGAAATGGGAATGTCGACGCCTGCTGAACTTGGTCGAATTTTATTAGTTCTGATGGTGTTTTCATTGGCAATTATACCGTTGCACTACCTCGCATCGTTCTGTTTCGAAGAAGCCGCCACCGGTTTCAGTAAAATGGTGTTTGTAAATATATTTTGTGGTTCAATGTTGTTCCTTGTCACTGAAGTATTACGGATGCCTTTCATAAATGCTGCTGCTTACGCAGAAATACTTGAGTATCCATTTTCATTGTTACCAATCTACTGTGTCAGCAAGAGTGTCAGGGAAATGGTGACATCTTCAATAAAGATTAAAGCCTGCGACAGCTTATGCAACCAATTAAATTATAAAAATTGCACACGACTAACTATATGCAATGAACTAGACATATCCATGTGTTGTATTGAGGATAATCCATTTTTAGGGTGGAAGGAACCGGGTATTGCAAGATATCTATTTACTATGATAGTTGTAGCGACTGTGTCATTTGCAATATTGCTAGCCAAGGAATACGAACTTTGGAACAAGGTCTTGTACAAGAAACAAGAAGAGACTATGATGTTATCTGGTACAAAACCAAAATCTAATGAGAGTAAAAAGGTTGAAGTAAATGCAGAAGTTGAAGATGATGATGTTGTGGAGGAAAAACAGCGTGTTCTAGCAATGACAAGTAGTGAGGTCACCGCACACAGCCTCGTGTGTCGCGAGCTGAGCAAGCGCTACCGGCGCCTCGTAGCCGTCGACCGACTCACGTTCGCGGTGCGCGGCGGAGAGTGCTTCGGCCTGCTCGGAGTCAACGGCGCCGGCAAGACCAGCACCTTCCGCATGCTGACCGGCGACGCACGCGTGTCGGACGGCGACGCGCTCGTGCACGGACACTCCGTGCGAGCACACGTGCAGGACGTGCACCGCCTCATTGGTGAGTCGACCCTATTACACCTCAGCTCGGTCCGCATGCTGACCGGCGACGCACGCGTGTCGGACGGCGACGCGCTCATGCACGGACACTCCGTGCGAGCACACGTGCAGGACGTGCACCGCCTCATTGGTGAGTCGACCCTATTACACCTCAGCTCGGTCCGCATGCTGACCGGCGACGCACGCGTGTCGGACGGCGACGCGCTCGTGCACGGACACTCGGTGCGAGCACACGTCTCGGTTCGCATGCTGACCGGCGACGCACGCGTGTCGGACGGCGACGCGCTCGTGCACGGACACTCCGTGCGAGCACACGTGCAGGACGTGCACCGCCTCATTGGTGAGTCGACCCTATTACACCTCAGCTCGGTCCGCATGCTGACCGGCGACGCACGCGTGTCGGACGGCGACGCGCTCATGCACGGACACTCCGTGCGAGCACACGTGCAGGACGTGCACCGCCTCATTGGTGAGTCGACCCTATTACACCTCAGCTCGGTCCGCATGCTGACCGGCGACGCACGCGTGTCGGACGGCGACGCGCTCGTGCACGGACACTCGGTGCGAGCACACGTCTCGGTTCGCATGCTGACCGGCGACGCACGCGTGTCGGACGGCGACGCGCTCGTGTACGGACACTCGGTGCGAGCACACGTGCAGGACGTGTACCGCCTCATTGGTGAGTCGACCCTATTACACCTCAGCTCAGTCCGTATGCTGACTGGCGACGCACGCGTGTCGGACGGCGACGCGCTCGTGCACGGACACTCGGTGCGAGCACACGTGCAGGACGTGCACCGCCTCATTGGTGAGTCGACCCTATTACACCTCAGCTCGGTCCGCATGCTGACCGGCGACGCACGCGTGTCGGACGGCGACGCGCTCGTGCACGGACACTCGGTGCGAGCACACGTGCAGGACGTGCACCGCCTCATTGGTGAGTCGACCCTATTACACCTCAGCTCGGTCCGTATGCTGACTGGCGACGCACGCGTGTCGGACGGCGACGCGCTCGTGCACGGACACTCGGTGCGAGCACACGTGCAGGACGTGCACCGCCTCATTGGTGAGTCGACCCTATTACACCTCAGCTCGATCCGTATGCTGACCGGCGACGCACGCGTGTCGGACGGCGACGCGCTCGTGCACGGACACTCGGTGCGAGCACACGTCTCGGTTCGCATGCTGACCGGCGACGCACGCGTGTCGGACGGCGACGCGCTCGTGTACGGACACTCGGTGCGAGCACACGTGCAGGACGTGCACCGCCTCATTGGTGAGTCGACCCTATTACACCTCAGCTCGGTCCGTATGCTGACTGGCGACGCACGCGTGTCGGACGGCGACGCGCTCGTGCACGGACACTCGGTGCGAGCACACGTGCAGGACGTGCACCGCCTCATTGGTGAGTCGACCCTATTACACCTCAGCTCGGTCCGCATGCTGACCGGCGACGCACGCGTGTCGGACGGCGACGCACGCGTGTCGGACGGCGACGCGCTCGTGCACGGACACTCGGTGCGAGCACACGTGCAGGACGTGCACCGCCTCATTGGTGAGTCGACCCTATTACACCTCAGCTCGGTCCGTATGCTGACTGGCGACGCACGCGTGTCGGACGGCGACGCGCTCGTGCACGGACACTCGGTGCGAGCACACGTGCAGGACGTGCACCGCCTCATTGGTGAGTCGACCCTATTACACCTCAGCTCGGTCCGCATGTTGACCGGCGACGCACGCGTGTCGGACGGCGACGCACGCGTGTCGGACGGCGACGCGCTCGTGCACGGACACTCGGTGCGAGCACACGTCTCGGTTCGCATGCTGACCGGCGACGCACGCGTGTCGGACGGCGACGCGCTCGTGTACGGACACTCGGTGCGAGCACACGTGCAGGACGTGCACCGCCTCATTGGTGAGTCGACCCTATTACACCTCAGCTCGGTCCACATGCTGATCGCCGACGCATGTGTGTGGGACGGCGACGCGCTCATGCACGGACCCTTGGTAAGAACCCACGTGCAGGACGTGTATTGCCTCATTTGTTACTGCCCCCAATTCGATGCACTGTTTGACAATTTAACCGCAAGGGAGATATTGAAGATTTTCTGTTTGCTGCGTGGCATTCCTACGTCAATAGGCGAAACTCATGCCATTCATCTTGCTAAACAATTGGGATTCATAAAGCACTATGACAAGAAGGTTCGGGAATGTAGTGGTGGAACAAAACGTAAAATCAGTACAGCGGTCGCGTTGCTCGGTGATTACCCAGTTATATTCCTGGATGAGCCTACGACAGGCATGGATCCGGCGTCGAAGCGGCTCGTGTGGCGCGGCATCAGCAGCGCGGTGGGCGGCGGGCGCAGCGTGGTGCTGACGTCACACAGCATGGAGGAGTGCGAGGCTCTCTGCTCCAAGCTCACCGTCATGGTCAACGGCAGGCTCTGCTGTCTCGGCTCGCTGCAACATCTCAAGAGCAAATTCTCACAGGGATACACAATAATCGTGAAATGTAAATCGGGTCCAAATCGAGACGCAGCAGTGCTAGACGTCCACAACTATATGACTACAAATTTTGTTGGTGCTAACCTCATCGAGACGTACCTGGGCATGAGCACGTACCACGTGTCGTCGGCGGGGCTGCCGTGGTGGCGCGTGTTCAGTGCGCTCGAACTAGCGCGGGACTCGCTGCCGCTTGATGACTACTCGGTCGCGCAGACAACACTCGAGCAAGTTTTCCTCGCATTTACAAAGCTCCAACGTCCTATAAATTAA

Protein

MRYLVPPKAIPAKTYTSFDVTYFNKTRGNLSSADMVLAYSPINQLTEKVAINAMAELARDSIDPDIFFFISLAISYTPKGYKNAKDMEAALIQPNAMNSILLGIQFDDEIANATSWPDDIKITFRFPAVMRSTTSDHQMQLSWQTNLLFPLFPNSGPREPDDQYGGTSPGYFSELFLFMQHAISKSIVKEKTGKNIDTKIYLQRLPQLESRVDQLLFILQRFVSIAIMLGFVYTFVNTVRAVTTEKELQLKETMAIMGLPSWLHWLAWFIKQFSFLLVTIVIMVILFKIPLSETETGVSYSVFTYTPWSVLLFFLILFVIASLTFSFMISVFFTRANTAASFMALIWFATFAVFMFTQMINETMSAPVKITLCLLSNTAIGYAFQMIIIAEGTMQGLQWANFFEPISYSENFQPAHVAFMLILDSVMYMAIAVYVENIRPGMYGVPLPWYYPFTVSYWWPNRISDTNREKTSDDLEYNDALLSVVHDEEPKGVPIGVNIQNLTKRYKGRGKAVDNLNLRLYENEITVLLGHNGAGKTTTISMLTGMVPPTSGSVTINGYDIVTETEKARRSLGICPQHNVLFPDLTVAEHLIFYSKLKGIPESEINEEIDHFVKLLELDDKRHAAASSLSGGQKRRLSAGCALCGRSRVVLLDEPTSGLDPAARRALWDLLQREKRGRTVLLTTHFMDEADVLADRVAVLAAGRLACLGSPYFLKRHYGLGYKLALVKDAACQVDLVTEFFKTYVPNLKQNSNIGSELTYILPSESVSKFPEMLKKLEEKKESLCISSYGLSVTSLEEVFMKAGIEDNNVEIKETKGDIEMIDMNGDMLKDNEPLHKTQGFHLLKNHIKAMFLKLMYNTLRNKALAAIQIIWPIINIILSMIVSLSWKFLNVLPPLELSLESGFKGTETLVSQGNDLRDGSTEANVMMAYKDYFKRSTYPGLKLLDVGTSNLKNVYLKLIAEDQSRVRYEDLVGATFRNNSITAWFSNYGLHDSAISLSLVENAIIRSLSPNTTLTFVNHPLPYSVEGMVQVMSTGTNTAFMFSFSLGFCIAVISSFLVLFVIKERISGAKLLQRVSGVRPVVMWSTALIWDWIWLFLNHICIIVTIACFQEMGMSTPAELGRILLVLMVFSLAIIPLHYLASFCFEEAATGFSKMVFVNIFCGSMLFLVTEVLRMPFINAAAYAEILEYPFSLLPIYCVSKSVREMVTSSIKIKACDSLCNQLNYKNCTRLTICNELDISMCCIEDNPFLGWKEPGIARYLFTMIVVATVSFAILLAKEYELWNKVLYKKQEETMMLSGTKPKSNESKKVEVNAEVEDDDVVEEKQRVLAMTSSEVTAHSLVCRELSKRYRRLVAVDRLTFAVRGGECFGLLGVNGAGKTSTFRMLTGDARVSDGDALVHGHSVRAHVQDVHRLIGESTLLHLSSVRMLTGDARVSDGDALMHGHSVRAHVQDVHRLIGESTLLHLSSVRMLTGDARVSDGDALVHGHSVRAHVSVRMLTGDARVSDGDALVHGHSVRAHVQDVHRLIGESTLLHLSSVRMLTGDARVSDGDALMHGHSVRAHVQDVHRLIGESTLLHLSSVRMLTGDARVSDGDALVHGHSVRAHVSVRMLTGDARVSDGDALVYGHSVRAHVQDVYRLIGESTLLHLSSVRMLTGDARVSDGDALVHGHSVRAHVQDVHRLIGESTLLHLSSVRMLTGDARVSDGDALVHGHSVRAHVQDVHRLIGESTLLHLSSVRMLTGDARVSDGDALVHGHSVRAHVQDVHRLIGESTLLHLSSIRMLTGDARVSDGDALVHGHSVRAHVSVRMLTGDARVSDGDALVYGHSVRAHVQDVHRLIGESTLLHLSSVRMLTGDARVSDGDALVHGHSVRAHVQDVHRLIGESTLLHLSSVRMLTGDARVSDGDARVSDGDALVHGHSVRAHVQDVHRLIGESTLLHLSSVRMLTGDARVSDGDALVHGHSVRAHVQDVHRLIGESTLLHLSSVRMLTGDARVSDGDARVSDGDALVHGHSVRAHVSVRMLTGDARVSDGDALVYGHSVRAHVQDVHRLIGESTLLHLSSVHMLIADACVWDGDALMHGPLVRTHVQDVYCLICYCPQFDALFDNLTAREILKIFCLLRGIPTSIGETHAIHLAKQLGFIKHYDKKVRECSGGTKRKISTAVALLGDYPVIFLDEPTTGMDPASKRLVWRGISSAVGGGRSVVLTSHSMEECEALCSKLTVMVNGRLCCLGSLQHLKSKFSQGYTIIVKCKSGPNRDAAVLDVHNYMTTNFVGANLIETYLGMSTYHVSSAGLPWWRVFSALELARDSLPLDDYSVAQTTLEQVFLAFTKLQRPIN

Uniprot

NA

ProteinModelPortal

NA

PDB

5XJY E-value=6.30508e-110, Score=1023

KEGG

101740098 K05643 ATP-binding cassette, subfamily A (ABC1), member 3 | (RefSeq) ATP-binding cassette sub-family

PATHWAY

02010 ABC transporters - Bombyx mori (domestic silkworm)

GO

GO:0005524 GO:0016887 GO:0006468 GO:0016021 GO:0015935 GO:0004812 GO:0006418 GO:0003723 GO:0046872 GO:0003824

Length:

2340

Number of predicted TMHs:

12

Exp number of AAs in TMHs:

266.667289999999

Exp number, first 60 AAs:

0.00299

Total prob of N-in:

0.31900

outside

1 - 221

TMhelix

222 - 244

inside

245 - 264

TMhelix

265 - 287

outside

288 - 310

TMhelix

311 - 333

inside

334 - 337

TMhelix

338 - 360

outside

361 - 369

TMhelix

370 - 392

inside

393 - 411

TMhelix

412 - 434

outside

435 - 864

TMhelix

865 - 887

inside

888 - 1040

TMhelix

1041 - 1063

outside

1064 - 1088

TMhelix

1089 - 1111

inside

1112 - 1123

TMhelix

1124 - 1146

outside

1147 - 1155

TMhelix

1156 - 1178

inside

1179 - 1255

TMhelix

1256 - 1278

outside

1279 - 2340

Pi

191.593755

Theta

166.558713

Tajima's D

0.325655

CLR

0.3874

CSRT

0.458427078646068

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree