SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10303  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA007261
Annotation
PREDICTED:_nudix_hydrolase_8-like_[Amyelois_transitella]
Location in the cell
Cytoplasmic   Reliability : 2.501
 

Sequence

CDS
ATGACTGAAGAAATCTTTAAGGGCGCAGGAGATAGATACAATGGAATTACAGTTGATTCCCAAATAGAATATACTGAGAACGATTTTCTTAGTATTTTAAATAACTCTTTAAAAAAATGGTCCGAGCAAAATAAGCGCTGCATATGGTTTAAAGTGAATATAAAACATGCAGACTGGGTGCCCATACTTGCCAAGGCTGGATTTGATTTCCATCACTCCAGGGACAGTTTTGTTATGATGTACAAATGGTTGCCTACAAACAGCAAAGCCAATTTGCCACCAGCATGCCATACAAATCTTGGTGTAGGAGGTATGGTCTTTAATAGCCAAAACCAAATACTAGTTGTGGTTGAACAACATACCGATATTGTTCATTGGAAACTACCAGGAGGTTATGTTGAAAGAGGTGAAGACATCAAAGATGCTGTTATAAGAGAAGTGATGGAGGAAACTGGAATTGAGGCATCTTTTGATTCAATTGTAACTTTGAGGCACAGTCACAATTCTATGTTTGGAAATTCGGATATTTACATAGTAGTTATGCTAAAAGCGATTTCTGATACTATCAACAAATCAGAAATTGAAATAGCAGCCTGTCAGTGGATGGATGTTGATGAGTATCTTAATCATCCAAATGTACATGAATTTAACCGTTCAATAGTGAGTCAAGCTCTGGAACTCCGCGAAAGGAAGCTAAAACTAAACCTGTACACAAAAACACTTAAATTTTCAAACTGGTCGAAAGAAATAACAAATCTAGTTTTAGAAGATTCAAAAGAATAA
Protein
MTEEIFKGAGDRYNGITVDSQIEYTENDFLSILNNSLKKWSEQNKRCIWFKVNIKHADWVPILAKAGFDFHHSRDSFVMMYKWLPTNSKANLPPACHTNLGVGGMVFNSQNQILVVVEQHTDIVHWKLPGGYVERGEDIKDAVIREVMEETGIEASFDSIVTLRHSHNSMFGNSDIYIVVMLKAISDTINKSEIEIAACQWMDVDEYLNHPNVHEFNRSIVSQALELRERKLKLNLYTKTLKFSNWSKEITNLVLEDSKE

Summary

Similarity
Belongs to the Nudix hydrolase family.
EMBL
BABH01034705    NWSH01001074    PCG72742.1    PCG72743.1    ODYU01010378    SOQ55451.1    + More
KQ459232    KPJ02780.1    AGBW02009515    OWR50616.1    PCG72744.1    SOQ55450.1    RSAL01000006    RVE54196.1    KPJ02781.1    KQ461155    KPJ08155.1    AGBW02013813    OWR42705.1    JTDY01004024    KOB68700.1    KQ971361    EFA08806.2    CVRI01000040    CRK94992.1    KK852663    KDR19066.1    GANO01004202    JAB55669.1    ATLV01014180    KE524947    KFB38433.1    AAAB01008200    EAA03301.4    AAAB01008592    EAA03450.5    KPJ08156.1    NEVH01024535    PNF16885.1    APCN01003217    AXCM01000042    PNF16883.1    AXCN02001602    LJIG01022605    KRT79676.1    GGFM01003107    MBW23858.1    GEDC01017652    JAS19646.1    GAMD01000760    JAB00831.1    GGFJ01007114    MBW56255.1    UFQS01000042    UFQT01000042    SSW98332.1    SSX18718.1    GGFM01003361    MBW24112.1    GGFJ01007186    MBW56327.1    GGFM01003279    MBW24030.1    GGFM01003147    MBW23898.1    GGFJ01007187    MBW56328.1    GEDC01009394    JAS27904.1    GGFJ01007190    MBW56331.1    GGFJ01007301    MBW56442.1    GFDL01007147    JAV27898.1    DS232546    EDS43264.1    GGFK01006902    MBW40223.1    GGFK01006889    MBW40210.1    GGFK01006915    MBW40236.1    GGFK01006948    MBW40269.1    GGFL01006068    MBW70246.1    GAPW01003007    JAC10591.1    JXUM01121026    JXUM01121027    KQ566454    KXJ70125.1    GDAI01000650    JAI16953.1    GGFL01014903    MBW79081.1    GGFL01014904    MBW79082.1    GGFL01005938    MBW70116.1    CH479194    EDW26998.1    GAKP01016515    JAC42437.1    KB632267    ERL91034.1    APGK01040155    APGK01040156    KB740975    ENN76585.1    KQ414665    KOC65135.1    CH379063    EDY72414.1    KRT06283.1    ADMH02001628    ETN61723.1    GBXI01009653    JAD04639.1    GAKP01016514    JAC42438.1    GDHF01012787    JAI39527.1    GDHF01022040    JAI30274.1    GL764666    EFZ17267.1    KK107167    QOIP01000010    EZA56407.1    RLU17607.1    KQ760116    OAD61949.1    CH954180    EDV46984.1    OUUW01000003    SPP78589.1    CH902632    EDV32859.1    SPP78588.1    JRES01001143    KNC25169.1    CH480852    EDW51496.1    AE014298    BT044161    AAF48489.1    ACH92226.1    GL888181    EGI65806.1    CM000366    EDX18004.1    QCYY01000609    ROT84025.1    CM000162    EDX01806.1    AY047526    AAK77258.1    CP012528    ALC49589.1   
Pfam
PF18290   Nudix_hydro        + More
PF00293   NUDIX
Interpro
IPR020084   NUDIX_hydrolase_CS        + More
IPR040618   Pre-Nudix       
IPR020476   Nudix_hydrolase       
IPR015797   NUDIX_hydrolase-like_dom_sf       
IPR003293   Nudix_hydrolase6-like       
IPR000086   NUDIX_hydrolase_dom       
SUPFAM
SSF55811   SSF55811       
PDB
4ZBP     E-value=6.31373e-27,     Score=298

Ontologies

Topology

Length:
260
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00212
Exp number, first 60 AAs:
0.0004
Total prob of N-in:
0.02209
outside
1  -  260
 
 

Population Genetic Test Statistics

Pi
120.216488
Theta
151.117209
Tajima's D
-0.695002
CLR
0.030598
CSRT
0.193140342982851
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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