Gene

KWMTBOMO10299  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007263

Annotation

putative_ribosomal_L1_domain_containing_1_[Operophtera_brumata]

Location

Bomo_Chr17(-):7163387-7168384      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.31

CDS

ATGGTGTCTGTGGAGATAAAGGTAAAGAAAGAAAAGAAAACCAAAGTATTTGCAGGGAGCAAAGTTGTCAAGCATAAGAAAAATAAACCTAAGAAATCTGTAGCTGAAAAAGCATTAAAACCGAAAAATTATGTACAAAATCCAACTCCGGCACCAATTATAAAGAAAAAGAAAAAGTATATTATGCCAACGAAGAGTGTGACAAACGACGTGGTAAATTCTTGTTTAACTGCTATCCTGCAATTATCCATACTCCACAAGAAAAAAAATACTATCCTTGATGACGAGTCACCAATATTTTGTGAGATATCCTGCATCAAGATACAAAGTGTTCAAACTAATATTAAATTTGTGCTACCTAATAGCACTGCAGCATCAACAGGTGAAATATGTTTAATAGTTCCTGATATGAAAAAAGGAAGAAGGTTTGATCATGAGCCAACAATTGATCACTGGGAAGAATTATTAAGGAAATCTGGCGTAACACAGGTAAAAACAATACTTCCACTAAGGCAAGTAAAGGTAGAATATGATCAGTTTGAGTTAAAACGTAAATTATTAACTCAACATGACTTTATCATGGTCGACACCAGAATATTGAGCCATGCATCACATTTGCTTGGAAAAATGTTTTTCAAGAAACATAATATGTTAATACCAGTAAGACTGCATGGCCAACGTGACCTTAAGAAAGCCATTGAAGTTGGTTTACGCACTGTAGTTCTCCGTTTAAATATTGGAATAACATCAACCATTCTTCTTGGTCATACTGGTATGCCACTGGATACATTACAAGAAAATGTCATTTCTTTTGTTGATCAATTGAGAACTAGATATCCAGGGGGTGAAGCCAATATAAGATCTCTTGCACTATGTATTCCGATGTCTATAGCTGTGCCACTATATCTCACTTTAAGATCATCAAACACAGTTAATGCTCCCAAAATCAAAAAGAATAAACCAAAAACTTTCAACACAATAGAGGATGAATTGTCAACAATTCCAGGTAGCAAAGTGACTGTTGCACCAGACGGGACAGTACATGTTATAAAACCCAACACTCAAAAGAGGAAAATAAATACTGTAATTAAGGAAGATGAAGAAATTGAATCTGAAAATGAATACAGTGAAGACAAAGATGCAGCAGAAGATGACCAATCTGAATAA

Protein

MVSVEIKVKKEKKTKVFAGSKVVKHKKNKPKKSVAEKALKPKNYVQNPTPAPIIKKKKKYIMPTKSVTNDVVNSCLTAILQLSILHKKKNTILDDESPIFCEISCIKIQSVQTNIKFVLPNSTAASTGEICLIVPDMKKGRRFDHEPTIDHWEELLRKSGVTQVKTILPLRQVKVEYDQFELKRKLLTQHDFIMVDTRILSHASHLLGKMFFKKHNMLIPVRLHGQRDLKKAIEVGLRTVVLRLNIGITSTILLGHTGMPLDTLQENVISFVDQLRTRYPGGEANIRSLALCIPMSIAVPLYLTLRSSNTVNAPKIKKNKPKTFNTIEDELSTIPGSKVTVAPDGTVHVIKPNTQKRKINTVIKEDEEIESENEYSEDKDAAEDDQSE

Uniprot

H9JCL8   A0A0L7LHP5   A0A2A4JMU0   A0A194QS65   A0A2H1WRD4   A0A212FBT1   + More
A0A194QBE1   A0A0L7R2N4   A0A310SGZ6   A0A026WMS1   A0A151JQY6   E1ZYJ7   E2B9B7   F4WJ34   E2B6F5   A0A158NTT7   A0A2J7PXG5   A0A195CTQ7   A0A2J7PXH3   A0A151WLN5   A0A067QQE6   A0A195BNY9   A0A232FE27   A0A0J7KQM5   K7J5J6   A0A195FPU0   A0A0C9R3L6   A0A0C9RKH3   A0A195F5I1   A0A0T6AUJ1   A0A2S2NC62   A0A2S2NJX4   A0A2H8TTA4   A0A1B6J3C9   A0A1B6FLE9   D6WVH9   A0A0K2VBS3   A0A2M4ADX6   A0A2M4AC39   A0A2M4AAE9   A0A2M4AES7   A0A2M4A9W4   A0A2M4ABC4   A0A2M3Z524   A0A2M4BJR5   A0A2P6KT81   V5HEK9   A0A0N8BFH4   A0A0P5GT05   A0A0P4XYD9   A0A0P5IHN0   A0A0N8CQV7   A0A0P4ZL98   A0A0P5A3M7   A0A0P5FMX1   A0A0P5H4X1   A0A0P5XNA7   A0A0P5APW0   A0A0P5B0S1   A0A0P5GPN1   A0A0P5L9H5   A0A0N8D743   A0A0N8CPK0   A0A0P5F3I3   A0A0P6F2P8   A0A0P6E472   A0A0N8E4E6   A0A0P5TIE5   A0A0N8CHV7   A0A0N8E8L9   A0A0P4YLX9   A0A0P6E6I9   A0A0P5KKF6   A0A0P5EXT5   A0A0P6G2J0   A0A0P5ARM3   A0A0P4YRW8   A0A0P5LVF2   A0A0N7ZXU3   A0A0P5Y6C7   A0A0P6DEP3   A0A0P6HQE0   A0A0N8DYV9   A0A0P5UW91  

Pubmed

19121390    26227816    26354079    22118469    24508170    30249741    + More
20798317    21719571    21347285    24845553    28648823    20075255    18362917    19820115    25765539   

EMBL

BABH01034696    JTDY01001100    KOB74884.1    NWSH01001074    PCG72753.1    KQ461155    + More
KPJ08159.1    ODYU01010486    SOQ55630.1    AGBW02009269    OWR51206.1    KQ459232    KPJ02777.1    KQ414665    KOC65137.1    KQ760116    OAD61947.1    KK107167    QOIP01000010    EZA56409.1    RLU17602.1    KQ978615    KYN29808.1    GL435225    EFN73751.1    GL446479    EFN87723.1    GL888181    EGI65804.1    GL445973    EFN88699.1    ADTU01026149    NEVH01020858    PNF21031.1    KQ977279    KYN04078.1    PNF21032.1    KQ982959    KYQ48774.1    KK853134    KDR10845.1    KQ976435    KYM87074.1    NNAY01000389    OXU28728.1    LBMM01004244    KMQ92672.1    KQ981382    KYN42322.1    GBYB01007387    JAG77154.1    GBYB01007386    JAG77153.1    KQ981805    KYN35641.1    LJIG01022809    KRT78605.1    GGMR01001747    MBY14366.1    GGMR01004860    MBY17479.1    GFXV01005374    MBW17179.1    GECU01014025    JAS93681.1    GECZ01018765    JAS51004.1    KQ971357    EFA08295.1    HACA01030399    HACA01030400    CDW47760.1    GGFK01005507    MBW38828.1    GGFK01005034    MBW38355.1    GGFK01004463    MBW37784.1    GGFK01005959    MBW39280.1    GGFK01004256    MBW37577.1    GGFK01004766    MBW38087.1    GGFM01002852    MBW23603.1    GGFJ01004082    MBW53223.1    MWRG01005644    PRD29526.1    GANP01010821    JAB73647.1    GDIQ01182867    JAK68858.1    GDIQ01238006    JAK13719.1    GDIP01235138    JAI88263.1    GDIQ01238005    JAK13720.1    GDIP01107791    JAL95923.1    GDIP01215336    JAJ08066.1    GDIP01205940    JAJ17462.1    GDIP01146245    JAJ77157.1    GDIQ01238004    JAK13721.1    GDIP01069601    JAM34114.1    GDIP01199434    JAJ23968.1    GDIP01205939    JAJ17463.1    GDIQ01239542    JAK12183.1    GDIQ01173102    JAK78623.1    GDIP01062303    JAM41412.1    GDIP01111447    JAL92267.1    GDIQ01266264    JAJ85460.1    GDIQ01068656    JAN26081.1    GDIQ01073251    JAN21486.1    GDIQ01177362    GDIQ01062900    JAN31837.1    GDIP01131594    JAL72120.1    GDIP01130191    JAL73523.1    GDIQ01051116    JAN43621.1    GDIP01225426    JAI97975.1    GDIQ01067255    JAN27482.1    GDIQ01182866    JAK68859.1    GDIQ01266263    JAJ85461.1    GDIQ01039461    JAN55276.1    GDIP01195035    JAJ28367.1    GDIP01225427    JAI97974.1    GDIQ01189109    JAK62616.1    GDIP01201993    JAJ21409.1    GDIP01062301    JAM41414.1    GDIQ01078397    JAN16340.1    GDIQ01031066    JAN63671.1    GDIQ01078396    JAN16341.1    GDIP01107790    JAL95924.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000053240    UP000007151    UP000053268    + More
UP000053825    UP000053097    UP000279307    UP000078492    UP000000311    UP000008237    UP000007755    UP000005205    UP000235965    UP000078542    UP000075809    UP000027135    UP000078540    UP000215335    UP000036403    UP000002358    UP000078541    UP000007266   

PRIDE

H9JCL8   

Pfam

PF00687   Ribosomal_L1

Interpro

IPR023674   Ribosomal_L1-like        + More
IPR028364   Ribosomal_L1/biogenesis       
IPR016095   Ribosomal_L1_3-a/b-sand       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011990   TPR-like_helical_dom_sf       
IPR036322   WD40_repeat_dom_sf       

SUPFAM

SSF56808   SSF56808        + More
SSF48452   SSF48452       
SSF50978   SSF50978       

Gene 3D

3.40.50.790     1.25.40.10     2.130.10.10    

CDD

cd00403  Ribosomal_L1

ProteinModelPortal

H9JCL8   A0A0L7LHP5   A0A2A4JMU0   A0A194QS65   A0A2H1WRD4   A0A212FBT1   + More
A0A194QBE1   A0A0L7R2N4   A0A310SGZ6   A0A026WMS1   A0A151JQY6   E1ZYJ7   E2B9B7   F4WJ34   E2B6F5   A0A158NTT7   A0A2J7PXG5   A0A195CTQ7   A0A2J7PXH3   A0A151WLN5   A0A067QQE6   A0A195BNY9   A0A232FE27   A0A0J7KQM5   K7J5J6   A0A195FPU0   A0A0C9R3L6   A0A0C9RKH3   A0A195F5I1   A0A0T6AUJ1   A0A2S2NC62   A0A2S2NJX4   A0A2H8TTA4   A0A1B6J3C9   A0A1B6FLE9   D6WVH9   A0A0K2VBS3   A0A2M4ADX6   A0A2M4AC39   A0A2M4AAE9   A0A2M4AES7   A0A2M4A9W4   A0A2M4ABC4   A0A2M3Z524   A0A2M4BJR5   A0A2P6KT81   V5HEK9   A0A0N8BFH4   A0A0P5GT05   A0A0P4XYD9   A0A0P5IHN0   A0A0N8CQV7   A0A0P4ZL98   A0A0P5A3M7   A0A0P5FMX1   A0A0P5H4X1   A0A0P5XNA7   A0A0P5APW0   A0A0P5B0S1   A0A0P5GPN1   A0A0P5L9H5   A0A0N8D743   A0A0N8CPK0   A0A0P5F3I3   A0A0P6F2P8   A0A0P6E472   A0A0N8E4E6   A0A0P5TIE5   A0A0N8CHV7   A0A0N8E8L9   A0A0P4YLX9   A0A0P6E6I9   A0A0P5KKF6   A0A0P5EXT5   A0A0P6G2J0   A0A0P5ARM3   A0A0P4YRW8   A0A0P5LVF2   A0A0N7ZXU3   A0A0P5Y6C7   A0A0P6DEP3   A0A0P6HQE0   A0A0N8DYV9   A0A0P5UW91  

PDB

5OQL     E-value=1.40777e-07,     Score=133

KEGG

101736043    K14775 ribosome biogenesis protein UTP30 | (RefSeq) ribosomal L1 domain-containing protein CG13096

GO

GO:0005840   GO:0030686   GO:0000470   GO:0003723   GO:0003924   GO:0046923   GO:0016021   GO:0015935   GO:0004812   GO:0006418   GO:0046872   GO:0003824  

Length:

388

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

4.41307

Exp number, first 60 AAs:

8e-05

Total prob of N-in:

0.13449

outside

1  -  388

 

 

Pi

172.601347

Theta

166.714561

Tajima's D

-0.604144

CLR

4.908715

CSRT

0.216139193040348

Interpretation

Uncertain