SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10298
Annotation
Nibrin_[Operophtera_brumata]
Location in the cell
Nuclear   Reliability : 4.422
 

Sequence

CDS
ATGTTAGAAATCATTTCATATTTAAAAAGCAAGGGTAAAAGAGTAATTCCTGATGCAGAAATTGGATCAGCCATACTTTATTGTTCTTTAAATAAATATTGCAATCCTGACTTCAATATTTCTAATGAAATACTTAAACAAACAGATCAAAATAAGATTACTAACATTTTGGCACCAGAGTCTCAAGAAATAACAAATATAAACAAAGAAGAACAAGTACTTCTCAATGAAACATTAGAAGTCACAAATAGTTTTAAGAGAAAGTTAAGTGAAGTAAGCAGTTATACCCAAAGCAACAAGAAATTTGCTTCTGGGACTAACAACATTGAAAATGATAACTGTAACAAAAGAAAAACTGAACATCAAGAATTTGATGATGTACAGAATCCTCCCAAGAAACTAGCCATGGAAATGAATTCATCTGAAAATGAGCTATTCAACTTTGTAAATCCTACCAATAAAAATAACAGCAAAACATCAGAAAAAAAACTAAATCTATCCAAACCAATGAAACGAAAAGCTGATGCTGATACAGACGATGATTTATTCAATTTTATAAAATTTAATGATAATGCAAAAGAGAATGCATCAAAACTGTGTAGATATGAAGATAAAGGCGATGAAGGAAACTCCACAGTGTCTATTTCAAATGTCAAGAAAACTATAACAACAGAGGAAATAATTGCTATGAGAGGAAAGAAACTTGAAGAATTAAAAAATTATACAAAGCCATATTCAGAGGTACAGCATTGGATTAAAAAAGAAATAAGTGATGACCTAAATCAAAAAATGAATGATCTTGACTTGGGAACCACTGTTGTTACTGTAAAAAGTGAATTGATAATAAAAAAAGAACCCGTAGAAATGCAGGAACCAGTATCATTAGTAAAAAATTTCAAAAAATTTAAGAAGGTTTGGCCGGTGAAAATGATGGTCACTGTTGTACCAAAAATAGAAAAAGACAAACAATTGAACGATGAAGTAAATTCTATGGTTTATACCCAGGACAATAACTGA
Protein
MLEIISYLKSKGKRVIPDAEIGSAILYCSLNKYCNPDFNISNEILKQTDQNKITNILAPESQEITNINKEEQVLLNETLEVTNSFKRKLSEVSSYTQSNKKFASGTNNIENDNCNKRKTEHQEFDDVQNPPKKLAMEMNSSENELFNFVNPTNKNNSKTSEKKLNLSKPMKRKADADTDDDLFNFIKFNDNAKENASKLCRYEDKGDEGNSTVSISNVKKTITTEEIIAMRGKKLEELKNYTKPYSEVQHWIKKEISDDLNQKMNDLDLGTTVVTVKSELIIKKEPVEMQEPVSLVKNFKKFKKVWPVKMMVTVVPKIEKDKQLNDEVNSMVYTQDNN

Summary

Pfam
PF00498   FHA        + More
PF16508   NIBRIN_BRCT_II
Interpro
IPR036420   BRCT_dom_sf        + More
IPR000253   FHA_dom       
IPR032429   Nibrin_BRCT2       
IPR040227   Nibrin-rel       
IPR008984   SMAD_FHA_dom_sf       
SUPFAM
SSF49879   SSF49879        + More
SSF52113   SSF52113       
Gene 3D
PDB
2K2W     E-value=0.0408851,     Score=85

Ontologies

Topology

Length:
338
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00036
Exp number, first 60 AAs:
0.00036
Total prob of N-in:
0.00790
outside
1  -  338
 
 

Population Genetic Test Statistics

Pi
134.795965
Theta
197.955407
Tajima's D
-0.997333
CLR
0.221315
CSRT
0.141442927853607
Interpretation
Uncertain
Copyright@ 2018-2023    Any Comments and suggestions mail to:zhuzl@cqu.edu.cn   渝ICP备19006517号

渝公网安备 50010602502065号