Gene

KWMTBOMO10297

Pre Gene Modal

BGIBMGA007264

Annotation

PREDICTED:_intraflagellar_transport_protein_140_homolog_[Amyelois_transitella]

Location

Bomo_Chr17(-):7140606-7151974      View in EpiBrowser

Location in the cell

PlasmaMembrane   Reliability : 2.05

CDS

ATGACTCTATACATAGATACTAAACTTAGTTTTTCTGATGAGAATGTGGTGTCAACTGTGGCTGCCTGGCACCCTTCATTGCCATTTTTGGCTATTGGATCTTACAATCAAGAAAAAGGTGGTTTTGCTACAATTTTCCAAGAAAACGGTTTACCTTTAGAGGGTTGTGAATGGCCCATTTTGTCATCTAATCAAGTGACTGCTCTTGCTTGGCATCCAACAAGGCGGTTGTTGGTTGTTGGATGGGATGGTGGAGAGCTTTACATCTGGCTTGAGTACTCATGGGCCCGATTAGAAGCACCTCACAATGCAGCATTAACTAATATTGCTTTTAGCTCTGGAGGAGGGAGATTGCTTGCATCTGATGCTGCAGGATCATTGTCAGGTTGGCAATCCAGTTCAGGAGCACCACTTACATCTTTTCATCATCAACTTGGTGAAGTCATAACTCATATTTCTTTCTGTACCCCTAGACCAAGTACAGAATCTTCTATTAGGGGTTTAGCTCGAGCAGCAGTTGCTGGAGATGAAAATGCTCTAGATGCTTTAGCAGCTTGGAGACCTAGAACAACAGCTAAAATAAGAGAAGGTTCACAACCTGATAATCATTCATGCTATGCAGTCCAAGATAATGGAGTGATACTTTATATTGACCAGACAGGTGCATGCTCAGAAGTACTCAATGCCCCTGGCAGTATAATGTTCATGGGTATAATAAGCAACATATATCTTCTTGTTGCATGGGAATCCGGTGGTGCATTAAGCTTGACAAGATTCCTAACCTCTGATGAAGGCTCATTAACAACTGACACTCATGTAAGAATGGCTGCAAGAAATGGACAGTCAATTGTACTGGCTGGAAATTTCTTTGTGGCTGTAATCACAGGAGACAATGTTGTCAGAGTGTGGGATAGTGAGACTGGCGATAATGATGTTCTGCTAAATGAGAATGAAAACATATCTGAAGGTGACACTTTTTCGAGTATTACTTATTGCAATTTAAGTGATACTCTTTGCTGTGGCACAGCACAAGGAACAATTAAAGGTGTCAGTTGGGGTTCTGAAGGATTAATGAACCCACTGTTACATGTAAACTGTATAACCAGTGCATATATTTTACGGGAACAACCTGTTTGTTGGGGCTACTCTCCCAATATATCAATGGTACAGAAATCTGCTAATGAGATATTTATAAATCACATAAATGAAAACACAACAATAATAAAGAGCAATGTAACCATAAGGGCTTTTGCATTCAGAGACCAATATATTGCCATAGGAGATGGAACTGATGTACAGATCTGGATGTGTAACAAAGATAATGACTTGAATTTTTCAATGATAAGAACCTTTCCATGGAAAACAGATGTGCTAATATTATATAATGACATACTAGTTGGTATAATTAATCCGCACATCGAATGTCATTCAGTTACGGGTGTACGCCTCGGAAGTCTGCCTACTAGCGAAGGTGAAGGAGAACCAATTAGTATCACTCAAACAAATAAATACGTTATAATTGTTACTTTGGACGGAACACTCAAACTAGCTGAGATCACTAAAAAAGGACTAAAAATGCCATGTCCCCCCAAAAATTGTTATCAAGTTATTGAAGATTTTGGTGAAGTTATGAGAGCATCTGTAAGTTGTAATGGACGTTACATTTGTTTGAGCGTAGCTAATTCCGGTTTAGCCCCAGACCCAAGGATTTACTTATGGGATGCAGCTAACGATATCATAACCAATATCCTCATCGCTGAAAGTTCAAAACCTCCATACCAAACGGTACCTATTGCAATAATATGGGATAACAGTGATCCGAGAATTGTAGCCGTACACATGAGATCAGCAGAATCAGATAAAATCTATTTATTTTTCTGCCATGAAGGAAAACTTCATGAATACGTGAATTGGTGCTCCGCGACGGAAGATTATGTTCAAACGGATTTTATACTTTGTTCCTTATGTAGTCCACACGTAGTCATATTGTCGCAGCAAAATATAAAGAGACTTTTGATGAGTGAATTTAAAGATGTAAACGACTGCGATACAAGCACAGTAAAACAAGTTTTAGATTTCCTTTATTATACGACAACAGGAAACTTAGAAAAGGCTGTCGTCGTGGGTTCTAGTATTTCTGGTGGTACCAGCCAGGTCATTTGGTATAGCTTAGCAAAGATGTGCGTATCTCTGAAACGTCCTGATGTAGGATCAATATGTCTTAGCAAAATGGAAAACATAAAAGGTGCTCTAATGATGCGTAAAGTCATGAATGACAACAGCATGGATGACAACTGCAAAGTAGCAGTGCTTGCTGTAAATCTTGGTATGATAGAAGAAGCCGAAAAGCTATTTCGTGAAGCACAAAGGCCTGATCTAATCACTCGGCTCGTATCAGCAAAGGAAGGTGGACTACTTCAAATAATTGAAGGAAATAAAGACGGTGAAAATATGTTATTGATTAAAAGTGCACAACACAAATTAGCTAAACATTTGTGGTCTAATGGAGAAACAAACGCATCGATTAAGCTATTTGAAAGTGCCGGAACTTTAGTACCACATGTTCCCAGAATGTTAATAGCTCAAGGCCAAACATCGGTACTAGCTCAGCATGTAGCTAATTCAAATGATACAAATTTGATAACATGGTGGGGACATTATTTGGAAAGTTTAGGCGATCTAGACGGAGCGCTTTCAGCATATGCCCGCGCTAATGATTTCGGTGAACAAACTAGGTTACTTTGTCACATGGATAGAATAGACGAGGCAGAGAAGTTATGCCAAAATAATCGAACCGCTGTGTACCAAATGGCCCGCTATTTTGAAATGCAACCCGACAAAACTGAAAACGCTGTAAAGATGTATATGAAAAGTGGTGCTGTGTCGTCGGCTGTCCGTGTTGCAGCTGAGGCAAGCGCTTGGAATCTTGTTTGGCGAGCTGGCTCTTCCTCACCAACTCACGCTCTATACGCAGCATCTATACTTGAGAATGCTGGACAAATAGAACAAGCGATTGCGTTGTATCAAAAAGCGGGAAAAATACATATGGCGTTAAAATTAGCTCTGGATTCCGGTGACACAAACGCAATGGTTGCTGCTGTAGAATCATTGGGCGATCGAGTAGACCCAGAAGTGGCTCACACTCTGGCATCACATTTACGGAAGGCAAACCATCACTCGCATGCAGCTGCACTTCTAGCTACGGCAGGAAAATATGAAGAAGCATTAGAGTTGGTGGAGCAAAGCTCGGCACCATTGTCGGAAGAATTGAGTGAAAGGTTGGCCGCTCCTGCCGGGACTAGTGGACGTGATGTCCTCTTGCGGCGCCTCGCTGACGTGTTAGGCACTCGCGGCCTATACCACCAGGCTGCCAAGCGTCTTGCCCATGCCGGCGATAAGGCAGGCGCGATGCGTTGGTTAATGCGTTCCGGAGACGCCGACCGCATCGCTACGTTTGCAGCGGCAACACGGGATCGCAACGCCCAATTGATGGCGGCGGACTACCTGCGACGCCACGCCGACTGGCGAACGAGACCGGACCTTATGCGCCATATTTTGCATTTCTACACGAGAGCCAAGGCGTACAGTAAACTAGCCGCTTTCTACGCGGAATGTGCCAAGACAGAAGTCGATGAGTATGACAACTATGAAAAAGCACTTGAAGCTCTAAAAGAAGCCGTCCGTTGCCTAGCGAAGTGTACTGATACAGAAACTGGTTCTCAAACGATGGCTCTACAAGAACAGAGTACCCTCGTCAAACGATTTCTGGATGTGAAAAAGATATTTGAGTCTGGAGAAATCAGTGCTGGTGTAACAAGTGGTCAACAACTTCTTCGAGCCGTCAGCGGTCGATCCGGTCTCGTGACAGAAGAAAAAGTCCTTCGCCTATTACTTAGACATGCTCCTGATCACGGTGATTTCGAGCAAAAACTTAGAGTTATACAGAGAGATTCCACAGATGACGACAGACAAAGTACGGCGTCTCCAAATCAAAGTATCGAAGAAATCGTTTAA

Protein

MTLYIDTKLSFSDENVVSTVAAWHPSLPFLAIGSYNQEKGGFATIFQENGLPLEGCEWPILSSNQVTALAWHPTRRLLVVGWDGGELYIWLEYSWARLEAPHNAALTNIAFSSGGGRLLASDAAGSLSGWQSSSGAPLTSFHHQLGEVITHISFCTPRPSTESSIRGLARAAVAGDENALDALAAWRPRTTAKIREGSQPDNHSCYAVQDNGVILYIDQTGACSEVLNAPGSIMFMGIISNIYLLVAWESGGALSLTRFLTSDEGSLTTDTHVRMAARNGQSIVLAGNFFVAVITGDNVVRVWDSETGDNDVLLNENENISEGDTFSSITYCNLSDTLCCGTAQGTIKGVSWGSEGLMNPLLHVNCITSAYILREQPVCWGYSPNISMVQKSANEIFINHINENTTIIKSNVTIRAFAFRDQYIAIGDGTDVQIWMCNKDNDLNFSMIRTFPWKTDVLILYNDILVGIINPHIECHSVTGVRLGSLPTSEGEGEPISITQTNKYVIIVTLDGTLKLAEITKKGLKMPCPPKNCYQVIEDFGEVMRASVSCNGRYICLSVANSGLAPDPRIYLWDAANDIITNILIAESSKPPYQTVPIAIIWDNSDPRIVAVHMRSAESDKIYLFFCHEGKLHEYVNWCSATEDYVQTDFILCSLCSPHVVILSQQNIKRLLMSEFKDVNDCDTSTVKQVLDFLYYTTTGNLEKAVVVGSSISGGTSQVIWYSLAKMCVSLKRPDVGSICLSKMENIKGALMMRKVMNDNSMDDNCKVAVLAVNLGMIEEAEKLFREAQRPDLITRLVSAKEGGLLQIIEGNKDGENMLLIKSAQHKLAKHLWSNGETNASIKLFESAGTLVPHVPRMLIAQGQTSVLAQHVANSNDTNLITWWGHYLESLGDLDGALSAYARANDFGEQTRLLCHMDRIDEAEKLCQNNRTAVYQMARYFEMQPDKTENAVKMYMKSGAVSSAVRVAAEASAWNLVWRAGSSSPTHALYAASILENAGQIEQAIALYQKAGKIHMALKLALDSGDTNAMVAAVESLGDRVDPEVAHTLASHLRKANHHSHAAALLATAGKYEEALELVEQSSAPLSEELSERLAAPAGTSGRDVLLRRLADVLGTRGLYHQAAKRLAHAGDKAGAMRWLMRSGDADRIATFAAATRDRNAQLMAADYLRRHADWRTRPDLMRHILHFYTRAKAYSKLAAFYAECAKTEVDEYDNYEKALEALKEAVRCLAKCTDTETGSQTMALQEQSTLVKRFLDVKKIFESGEISAGVTSGQQLLRAVSGRSGLVTEEKVLRLLLRHAPDHGDFEQKLRVIQRDSTDDDRQSTASPNQSIEEIV

Uniprot

H9JCL9   A0A2A4JMX3   A0A2A4JLA4   A0A3S2LEW2   A0A194QCR5   A0A194QX60   + More
A0A212FBW5   A0A2H1WRD4   A0A0L7LHF9   A0A1W4XS70   A0A1Y1LC70   D6WYI0   A0A2A3E9F8   A0A088AR77   A0A232F211   A0A0L7REW4   A0A0N0BGD5   U4U656   A0A026X2W4   E2BHL3   N6TC78   A0A1J1JBD5   A0A182H7E1   A0A1S4F383   A0A182QMN5   B3N7R8   A0A1W4UQ82   A0A182W690   B4JDR0   A0A182RYS9   A0A182S5V1   B4P2F8   B4LTN0   B0WX27   A0A182K189   A0A182LTL5   A0A182XY78   Q7QEF0   B4N0R2   A0A195DV07   A0A0L0C7R8   Q17GN0   A0A182X7I0   A0A182VN56   Q7KTZ4   A0A084VVC2   F4W883   Q29N55   A0A0J9TCL0   B4KFH2   A0A151X0N1   A0A182GRS1   A0A195CD47   A0A182FK97   A0A182IJ20   A0A158NSQ7   A0A195EWW3   W5JLC0   A0A151HY97   A0A3B0JBJ3   A0A0R3NSH5   A0A336M4N6   A0A1I8MB63   A0A1B0G1R8   A0A1I8Q959   A0A1A9Y1E4   A0A1A9UHQ8   A0A1B0ARY6   A0A1B6C8A4   A0A1B6GEG0   E9J6R2   B4G886   Q9VPR0   E0VKY5   B3MUG0   Q1EC86   T1IR84   K1QP23   T1IGI5   A9JTK8   A0A2S2NHJ3   A0A3P8ZRX0   A0A1L8EYA0   G3P0L7   A0A3P9HNS0   A0A3P9M5M4   H2LT88   A0A3B3QIR7   J9K0B3   A0A3P9HN34   E1B860   A0A3B4XIP2   A0A1A7WHH5   A0A3P9KQW3   A0A0C9PMX2   A0A3B4Z0Z9   A0A3Q1GQH2   A0A1S3NFY9   A0A3Q0RGJ2   A0A3B4XXK7  

Pubmed

19121390    26354079    22118469    26227816    28004739    18362917    + More
19820115    28648823    23537049    24508170    30249741    20798317    26483478    17510324    17994087    17550304    25244985    12364791    14747013    17210077    26108605    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    24438588    21719571    15632085    22936249    21347285    20920257    23761445    25315136    21282665    26109357    26109356    20566863    22992520    25069045    27762356    17554307    29240929    19393038   

EMBL

BABH01034694    NWSH01001074    PCG72750.1    PCG72751.1    RSAL01000168    RVE45233.1    + More
KQ459232    KPJ02775.1    KQ461155    KPJ08161.1    AGBW02009269    OWR51208.1    ODYU01010486    SOQ55630.1    JTDY01001100    KOB74882.1    GEZM01060181    JAV71213.1    KQ971362    EFA08985.1    KZ288313    PBC28358.1    NNAY01001254    OXU24602.1    KQ414608    KOC69370.1    KQ435791    KOX74398.1    KB631696    ERL85430.1    KK107046    QOIP01000004    EZA61734.1    RLU24205.1    GL448301    EFN84822.1    APGK01035666    KB740928    ENN77909.1    CVRI01000075    CRL08369.1    JXUM01116064    JXUM01116065    JXUM01116066    KQ565945    KXJ70504.1    AXCN02001335    CH954177    EDV57244.1    CH916368    EDW03430.1    CM000157    EDW87154.1    KRJ97043.1    CH940649    EDW65003.1    DS232156    EDS36288.1    AXCM01003490    AAAB01008847    EAA06855.4    CH963920    EDW77675.1    KQ980322    KYN16582.1    JRES01000772    KNC28438.1    CH477257    EAT45838.1    AE014134    AAS64635.1    ATLV01017170    KE525157    KFB41916.1    GL887898    EGI69578.1    CH379060    EAL33488.2    CM002910    KMY87334.1    KMY87335.1    CH933807    EDW13087.1    KQ982624    KYQ53689.1    JXUM01083090    JXUM01083091    JXUM01083092    JXUM01083093    JXUM01083094    JXUM01083095    KQ563355    KXJ73990.1    KQ978023    KYM98003.1    ADTU01025108    KQ981948    KYN32641.1    ADMH02000750    ETN65177.1    KQ976723    KYM76673.1    OUUW01000004    SPP79727.1    KRT03884.1    UFQT01000523    SSX24950.1    CCAG010007356    JXJN01002620    GEDC01027634    JAS09664.1    GECZ01031462    GECZ01009076    JAS38307.1    JAS60693.1    GL768329    EFZ11491.1    CH479180    EDW28566.1    BT021360    AAF51483.2    AAX33508.1    DS235255    EEB14041.1    CH902624    EDV33489.2    BT025848    ABF85748.1    JH431338    JH816435    EKC35643.1    ACPB03001109    BC155381    AAI55382.1    GGMR01004000    MBY16619.1    CM004482    OCT64308.1    ABLF02034466    HADW01004022    SBP05422.1    GBYB01002508    JAG72275.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053268    UP000053240    UP000007151    + More
UP000037510    UP000192223    UP000007266    UP000242457    UP000005203    UP000215335    UP000053825    UP000053105    UP000030742    UP000053097    UP000279307    UP000008237    UP000019118    UP000183832    UP000069940    UP000249989    UP000075886    UP000008711    UP000192221    UP000075920    UP000001070    UP000075900    UP000075901    UP000002282    UP000008792    UP000002320    UP000075881    UP000075883    UP000076408    UP000007062    UP000007798    UP000078492    UP000037069    UP000008820    UP000076407    UP000075903    UP000000803    UP000030765    UP000007755    UP000001819    UP000009192    UP000075809    UP000078542    UP000069272    UP000075880    UP000005205    UP000078541    UP000000673    UP000078540    UP000268350    UP000095301    UP000092444    UP000095300    UP000092443    UP000078200    UP000092460    UP000008744    UP000009046    UP000007801    UP000005408    UP000015103    UP000265140    UP000186698    UP000007635    UP000265200    UP000265180    UP000001038    UP000261540    UP000007819    UP000009136    UP000261360    UP000261400    UP000257200    UP000087266    UP000261340   

PRIDE

H9JCL9    Q7KTZ4    Q1EC86   

Pfam

PF00687   Ribosomal_L1        + More
PF00400   WD40
PF00300   His_Phos_1
PF01591   6PF2K
PF13176   TPR_7
PF13181   TPR_8
PF12894   ANAPC4_WD40

Interpro

IPR015943   WD40/YVTN_repeat-like_dom_sf        + More
IPR036322   WD40_repeat_dom_sf       
IPR011990   TPR-like_helical_dom_sf       
IPR023674   Ribosomal_L1-like       
IPR028364   Ribosomal_L1/biogenesis       
IPR016095   Ribosomal_L1_3-a/b-sand       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR019775   WD40_repeat_CS       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR013026   TPR-contain_dom       
IPR013079   6Phosfructo_kin       
IPR027417   P-loop_NTPase       
IPR003094   6Pfruct_kin       
IPR013078   His_Pase_superF_clade-1       
IPR029033   His_PPase_superfam       
IPR019734   TPR_repeat       
IPR024977   Apc4_WD40_dom       
IPR011044   Quino_amine_DH_bsu       

SUPFAM

SSF50978   SSF50978        + More
SSF48452   SSF48452       
SSF56808   SSF56808       
SSF50998   SSF50998       
SSF52540   SSF52540       
SSF53254   SSF53254       
SSF50969   SSF50969       

Gene 3D

2.130.10.10     1.25.40.10     3.40.50.790     3.40.50.1240    

CDD

cd00403  Ribosomal_L1
cd07067  HP_PGM_like

ProteinModelPortal

H9JCL9   A0A2A4JMX3   A0A2A4JLA4   A0A3S2LEW2   A0A194QCR5   A0A194QX60   + More
A0A212FBW5   A0A2H1WRD4   A0A0L7LHF9   A0A1W4XS70   A0A1Y1LC70   D6WYI0   A0A2A3E9F8   A0A088AR77   A0A232F211   A0A0L7REW4   A0A0N0BGD5   U4U656   A0A026X2W4   E2BHL3   N6TC78   A0A1J1JBD5   A0A182H7E1   A0A1S4F383   A0A182QMN5   B3N7R8   A0A1W4UQ82   A0A182W690   B4JDR0   A0A182RYS9   A0A182S5V1   B4P2F8   B4LTN0   B0WX27   A0A182K189   A0A182LTL5   A0A182XY78   Q7QEF0   B4N0R2   A0A195DV07   A0A0L0C7R8   Q17GN0   A0A182X7I0   A0A182VN56   Q7KTZ4   A0A084VVC2   F4W883   Q29N55   A0A0J9TCL0   B4KFH2   A0A151X0N1   A0A182GRS1   A0A195CD47   A0A182FK97   A0A182IJ20   A0A158NSQ7   A0A195EWW3   W5JLC0   A0A151HY97   A0A3B0JBJ3   A0A0R3NSH5   A0A336M4N6   A0A1I8MB63   A0A1B0G1R8   A0A1I8Q959   A0A1A9Y1E4   A0A1A9UHQ8   A0A1B0ARY6   A0A1B6C8A4   A0A1B6GEG0   E9J6R2   B4G886   Q9VPR0   E0VKY5   B3MUG0   Q1EC86   T1IR84   K1QP23   T1IGI5   A9JTK8   A0A2S2NHJ3   A0A3P8ZRX0   A0A1L8EYA0   G3P0L7   A0A3P9HNS0   A0A3P9M5M4   H2LT88   A0A3B3QIR7   J9K0B3   A0A3P9HN34   E1B860   A0A3B4XIP2   A0A1A7WHH5   A0A3P9KQW3   A0A0C9PMX2   A0A3B4Z0Z9   A0A3Q1GQH2   A0A1S3NFY9   A0A3Q0RGJ2   A0A3B4XXK7  

PDB

6EOJ     E-value=0.00304079,     Score=101

KEGG

101735914    K19672 intraflagellar transport protein 140 | (RefSeq) intraflagellar transport protein 140 homolog

GO

GO:0031514   GO:0042073   GO:0030991   GO:0036064   GO:0005930   GO:0035721   GO:0006003   GO:0005524   GO:0006000   GO:0003873   GO:1905515   GO:0007605   GO:0097730   GO:0060271   GO:0007507   GO:0032391   GO:0060041   GO:0048701   GO:0042733   GO:0061512   GO:0031076   GO:0021532   GO:0035845   GO:0072001   GO:1990403   GO:0007368   GO:0008589   GO:1902017   GO:0001750   GO:0005813   GO:0005515   GO:0003924   GO:0046923   GO:0016021   GO:0015935   GO:0004812   GO:0006418   GO:0003723   GO:0046872   GO:0003824  

Length:

1337

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.08332000000001

Exp number, first 60 AAs:

0.10991

Total prob of N-in:

0.11203

outside

1  -  1337

 

 

Pi

254.179257

Theta

156.8822

Tajima's D

-1.131933

CLR

126.848103

CSRT

0.114694265286736

Interpretation

Uncertain