Gene

KWMTBOMO10293

Pre Gene Modal

BGIBMGA007297

Annotation

PREDICTED:_protein_SDA1_homolog_[Amyelois_transitella]

Location

Bomo_Chr17(+):7113585-7115914      View in EpiBrowser

Full name

Protein SDA1      

Location in the cell

Nuclear   Reliability : 4.177

CDS

ATGGTTAGGCATAATAATCAACTTCCGAACAACCTAACGCAGTTGCAAAATCTTATAAAACGTGATCCAGAATCTTACAAAGAAGAGTTTCATCAACAACTTGCACATTTTGAGACCACTTTAGAAATATTCAACTTGAACCCCACACAATATAGTAAAAAACTCGATGAGCAAGCTATGTTCTTAGCTCAAGTTGCACAGTGTTATTTTAATGAAATGAAAACTTTTCCACAAAAAATTGTAGATGTTTTAAAAACACATAACACAACATTACATAATGAAATGCGTTTGGCATTATGCAAGTGCTTAATTTTACTTCGAAATAAAAACTTTATTACGCCATTTGATTTGCTAGAATTGTTTTTTACACTTTTAAAATGCCAAGATAAATATTTGAGGGATTTTTTGAAAACTCATATTATAACAGACATCAAAAACATGAACATGAAAAATAAAGATATGAAACTGAATTCAACATTGCAGAACTTTATTTTTAGCATGTTACAAGATTCAAACACAAGAGCTGCTAAACTCTCTATTGACATACTTGTTGAATTATATCACAAAAATATTTGGAATGATCAAAAAACTGTCAACATTATTGCTGATATTGGATGCTTTTCCAAATTCACCAAAGTTCTTGTAGCATCATTAAAATTTTTCCTGGGTAGAGATGAGGAAGAAAAAGAACAAAATTCAGATAGTGATGACGAAATTGATCCAAGAGATACAATGATTTCTAATAAATTTAATAAGAAAACAAGGAAAAGGGAAAAAATGGTGGAGAAAGTAAAAAAGATTGCAAAAAAGATGAAGAAAAAGAAGCAAAAAGCTCCTGCATTCAATTTTTCAGCATTACATCTGATCAACAACCCGCAAGGTCTTGCAGAGAAATTATTCAAACAGATGGAGGCTTCAAATGATAGATTTGAGGTAAAGTTAATGACCTTAGATGTTGTGTCAAGATTGATCGGTCTACACAATCTTTTCCTTTTCAATTTCTACCCATTTATAGCTAGATTACTTTTGCCTCATCAAAGAGAAGTTACTCGAATTTTGCAATTTGCTGCACAAGCTTCCCATGAGTTGGTACCATATGAAGTTATTGAGCCAGTAATGCGTGCCATTGCAAATAACTTTATAACTGAACGAAATTCAACTGATGTAATGGCAGTGGGATTAAATGCTGTGCGTGAAATATGCACAAGGTGTCCCCTTGCTATTGGAGAAGATTTACTAAGAGATTTAGTTCAATATAAAAGTTACAAAGAAAAATCTGTGATGATGGCTGCTAGATCCTTAATTCAATTATACAGACAATCAATGCCAGAACTTCTACATAAAAAAGACAGAGGTAGACCTACAGAAGCCTCAATCGAACTGAAAACAAAGAAATATGGTGAACTAGAAACAAAGGATTATATTCCTGGTTCTGAAGTCCTGTTGGAAAAAGAGAAAGAGAAAAATAATGATAAAAAGAAAAGTGAAAAAAATAAAAAGCAAAAGAATGATTCTGACAGTGAAGAATGGGTTGACGTTGCGTCATCTGCTTCAGAAATTGAAATCTCAGACAGTGAAGAAAGTGACATAGACGAAAATGGTGAAGCTGAACAATGTGATGTAGACGATACTGATAACATGTTTGACAGACCTGAAGATACTGTACAAAAAAATGAAGAAAGAAAAATATTAAAAGCAAAACGTAAACTGGACAATGAAGAAAAAGTAAAATGTGCACGTGAAATTGCTATGGAGACAATATTTACGGATGAAGATTTTAAAAGAATTGAAGCTGCACAAATTAAAAAGAATATTAGTGGCGTCAAAAGAAAATCAAATACTAACATTGAAGAAGAGGAGGCAGAATCTGGAGAATTGGTTCAACTTGGTGCTATTGAAAATATTTATAAAAAGAAAAAACATGATAAGAATGCAAGGTTGGAGAGTGTAATGAAAGGACGAGAAGATAGGCAAAAATATGGATACAAAGATCGCAGGAAAAATGCAAACTGCTCTAAAACAAATAGGGAAAAAAGGAAAACTAAAAACTATCAAATGGTAAAACACAAAGCAAAAGGCAAAATCAAGAGATCATTCAAAGAAAAGCAAATTGCATTTAGAAACTACCTAATTAAACAGAAGAAAATGAAATAA

Protein

MVRHNNQLPNNLTQLQNLIKRDPESYKEEFHQQLAHFETTLEIFNLNPTQYSKKLDEQAMFLAQVAQCYFNEMKTFPQKIVDVLKTHNTTLHNEMRLALCKCLILLRNKNFITPFDLLELFFTLLKCQDKYLRDFLKTHIITDIKNMNMKNKDMKLNSTLQNFIFSMLQDSNTRAAKLSIDILVELYHKNIWNDQKTVNIIADIGCFSKFTKVLVASLKFFLGRDEEEKEQNSDSDDEIDPRDTMISNKFNKKTRKREKMVEKVKKIAKKMKKKKQKAPAFNFSALHLINNPQGLAEKLFKQMEASNDRFEVKLMTLDVVSRLIGLHNLFLFNFYPFIARLLLPHQREVTRILQFAAQASHELVPYEVIEPVMRAIANNFITERNSTDVMAVGLNAVREICTRCPLAIGEDLLRDLVQYKSYKEKSVMMAARSLIQLYRQSMPELLHKKDRGRPTEASIELKTKKYGELETKDYIPGSEVLLEKEKEKNNDKKKSEKNKKQKNDSDSEEWVDVASSASEIEISDSEESDIDENGEAEQCDVDDTDNMFDRPEDTVQKNEERKILKAKRKLDNEEKVKCAREIAMETIFTDEDFKRIEAAQIKKNISGVKRKSNTNIEEEEAESGELVQLGAIENIYKKKKHDKNARLESVMKGREDRQKYGYKDRRKNANCSKTNREKRKTKNYQMVKHKAKGKIKRSFKEKQIAFRNYLIKQKKMK

Description

Required for 60S pre-ribosomal subunits export to the cytoplasm.

Similarity

Belongs to the SDA1 family.

Feature

chain  Protein SDA1

Uniprot

A0A194QRP6   A0A2H1W0L8   A0A0L7L5X1   A0A3S2NPP4   H9JCQ0   A0A2A4JLT8   + More
A0A1Y1KV00   A0A067RSS7   A0A2J7REK4   D6WGI6   U4U487   N6TXL5   A0A336K2S0   A0A1B6DH20   A0A0K8TT54   A0A1Q3F542   B0W2V0   A0A1A9ZUY5   A0A1B0FR97   A0A1A9XY36   A0A1A9UU13   A0A212FBU3   A0A1B0BKV3   A0A154P7I3   A0A1A9W0Z4   A0A1B6LCF6   A0A1B6FWD5   A0A1B0CJK2   A0A0J7K3H0   A0A1J1IS23   J9JQ33   A0A1Z5L5T2   A0A226D7Y6   A0A3Q2U7P0   A0A195C3Q2   A0A2R5LHP1   A0A3Q1IMC7   G1NC06   A0A091PCF3   A0A091TCM5   A0A226MV88   A0A1V4KZ41   A0A3Q3VUB1   H0YTV3   W4Y4W6   R7VTE4   A0A3P9Q422   A0A087QKC6   U3K166   A0A315VTR0  

Pubmed

26354079    26227816    19121390    28004739    24845553    18362917    + More
19820115    23537049    26369729    22118469    28528879    15592404    20838655    20360741    23371554    29703783   

EMBL

KQ461155    KPJ08162.1    ODYU01005610    SOQ46631.1    JTDY01002737    KOB70815.1    + More
RSAL01000168    RVE45237.1    BABH01034692    NWSH01001074    PCG72746.1    GEZM01075740    JAV63990.1    KK852482    KDR22874.1    NEVH01004959    PNF39265.1    KQ971321    EFA00563.1    KB631687    ERL85391.1    APGK01050956    KB741180    ENN73106.1    UFQS01000055    UFQT01000055    SSW98701.1    SSX19087.1    GEDC01019852    GEDC01012325    GEDC01010748    JAS17446.1    JAS24973.1    JAS26550.1    GDAI01000270    JAI17333.1    GFDL01012363    JAV22682.1    DS231829    EDS30309.1    CCAG010004671    AGBW02009269    OWR51209.1    JXJN01016042    KQ434831    KZC07837.1    GEBQ01018626    JAT21351.1    GECZ01015247    JAS54522.1    AJWK01014690    LBMM01015216    KMQ84887.1    CVRI01000055    CRL01321.1    ABLF02031374    GFJQ02004340    JAW02630.1    LNIX01000028    OXA41662.1    AADN05000017    KQ978317    KYM95230.1    GGLE01004915    MBY09041.1    KK671096    KFQ05051.1    KK447472    KFQ72069.1    MCFN01000404    OXB59243.1    LSYS01001085    OPJ89833.1    ABQF01043890    AAGJ04128951    AAGJ04128952    AAGJ04128953    KB375434    EMC87836.1    KL225719    KFM01680.1    AGTO01011547    NHOQ01001156    PWA26962.1   

Proteomes

UP000053240    UP000037510    UP000283053    UP000005204    UP000218220    UP000027135    + More
UP000235965    UP000007266    UP000030742    UP000019118    UP000002320    UP000092445    UP000092444    UP000092443    UP000078200    UP000007151    UP000092460    UP000076502    UP000091820    UP000092461    UP000036403    UP000183832    UP000007819    UP000198287    UP000000539    UP000078542    UP000265040    UP000001645    UP000198323    UP000190648    UP000261620    UP000007754    UP000007110    UP000242638    UP000053286    UP000016665   

PRIDE

H9JCQ0   

Pfam

PF05285   SDA1        + More
PF08158   NUC130_3NT
PF03259   Robl_LC7
PF14630   ORC5_C
PF13191   AAA_16

Interpro

IPR012977   Uncharacterised_NUC130/133_N        + More
IPR027312   Sda1       
IPR007949   SDA1_dom       
IPR016024   ARM-type_fold       
IPR004942   Roadblock/LAMTOR2_dom       
IPR027417   P-loop_NTPase       
IPR041664   AAA_16       
IPR020796   ORC5       

SUPFAM

SSF48371   SSF48371        + More
SSF52540   SSF52540       

ProteinModelPortal

A0A194QRP6   A0A2H1W0L8   A0A0L7L5X1   A0A3S2NPP4   H9JCQ0   A0A2A4JLT8   + More
A0A1Y1KV00   A0A067RSS7   A0A2J7REK4   D6WGI6   U4U487   N6TXL5   A0A336K2S0   A0A1B6DH20   A0A0K8TT54   A0A1Q3F542   B0W2V0   A0A1A9ZUY5   A0A1B0FR97   A0A1A9XY36   A0A1A9UU13   A0A212FBU3   A0A1B0BKV3   A0A154P7I3   A0A1A9W0Z4   A0A1B6LCF6   A0A1B6FWD5   A0A1B0CJK2   A0A0J7K3H0   A0A1J1IS23   J9JQ33   A0A1Z5L5T2   A0A226D7Y6   A0A3Q2U7P0   A0A195C3Q2   A0A2R5LHP1   A0A3Q1IMC7   G1NC06   A0A091PCF3   A0A091TCM5   A0A226MV88   A0A1V4KZ41   A0A3Q3VUB1   H0YTV3   W4Y4W6   R7VTE4   A0A3P9Q422   A0A087QKC6   U3K166   A0A315VTR0  

PDB

5JCS     E-value=5.14677e-62,     Score=605

KEGG

101735417    K14856 protein SDA1 | (RefSeq) protein SDA1 homolog

GO

GO:0042273   GO:0000055   GO:0030036   GO:0005730   GO:0005634   GO:0000808   GO:0006260   GO:0005488   GO:0016021   GO:0046923   GO:0015935   GO:0004812   GO:0006418   GO:0003723   GO:0046872   GO:0003824  

PANTHER

PTHR12730  

Subcellular location

  

Length:

717

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.49375

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04647

outside

1  -  717

 

 

Pi

211.294458

Theta

205.748998

Tajima's D

0.126118

CLR

0

CSRT

0.404179791010449

Interpretation

Uncertain