Silkworm Genome Informatics Database

Gene

KWMTBOMO10288

Pre Gene Modal

BGIBMGA007295

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_chaoptin-like_[Bombyx_mori]

Location

Bomo_Chr17(+):6963545-6978962 View in EpiBrowser

Location in the cell

Extracellular Reliability : 1.615

CDS

ATGTCTTGCATCGCGGTACCTTTACACAGATTTCCAGAATGGCCTCGGATAGAGCTTCAACACCTAGACGTGAGCATGTCTAACCTAGAAGTGCTCTCGGAAAGTGCTCTAGATGGTTTGAAACTGCAAACTTTAGTTCTAGTAGCTAATAAATTGCATCATATAGAACAACACGCCTTTAGTTCGATGGCGTCATCGCTGGCGTCTCTAGACCTTGGTTACAATGAGTTCACTGAAATACCGCAACAAGGCTTAAAAGATTTAAAAGTTTTGAACTGGTTGAATTTGCAGAATAACAACATAGTGTACATTGGGCTCGAAGTTAATTGGCATCACCTAGAAGAGACTCTCACGAGCTTATCGCTGAGCAACAATCAAATTATTTTTCTGAAATCTCAAGCTTTATCATCACTGCACCATCTCTTACAATTAGATTTGGAAGGAAATCATATAAGAAAATTGGAACACAACAATTTGTTCCACTTGCCGGACAGTCTGGCTCTAGTCGGTCGACTTCGTCATTTATCTCTAGCTTACAACCGACTAGAAGAATCACCCCTACTGCCTGCTCGGATTCAGACGCTCTCGTTGGCTGGAAACTTTTTAACTTCAATACCCGCCGTGCTACAAACACTTGAGCCTGGTTCCATTCGTTATCTGGACCTAAGCTACAACAAGATATCTAATTTGTTACCCAACGACTTTTTAGATTGGGCCACAGCCCTGGGAACTGTAAACTTAAGAGACGATGCTTTTCACGCCTTCGCTCGGAATCAAGAATTATTCTTGAGAATCACAATGACATCGTTAAGAAAATTGCCAATGGCTTTTATGAGACATCTGGGCCAAATACCTCAACTAGGTATTGACATCAGCCACAATCAACTCTCCACTCTCAACCCAGCCATATTCTATCCGAATTTCACAAGTTGGAGTCAAGTTGCAACCAAGCTACTGTCAGGTGGCTTGATTTTAACGGGAAATCCATTGGAATGTGAATGTGAACTAGCGTGGCTGGGTGCATGGCTACGACGCTGGTTGCAAGAGAACGAAGCAGGGGCAGAGTTGAGGAGAGCAGTGCGTGAAGCGTCTTGTAAAGATCAACTCGGACGAAGGATACCGCTTCTACAACTCCGCGCTGACGAAGCCGAATGCCACGCGAGTGCGCTTTCCAGTGACGCTCAGCTCAATCACAAAAAGATGCTACACACATTCATAGCCGCAATCTGGATTTTAATATTCAGATGA

Protein

MSCIAVPLHRFPEWPRIELQHLDVSMSNLEVLSESALDGLKLQTLVLVANKLHHIEQHAFSSMASSLASLDLGYNEFTEIPQQGLKDLKVLNWLNLQNNNIVYIGLEVNWHHLEETLTSLSLSNNQIIFLKSQALSSLHHLLQLDLEGNHIRKLEHNNLFHLPDSLALVGRLRHLSLAYNRLEESPLLPARIQTLSLAGNFLTSIPAVLQTLEPGSIRYLDLSYNKISNLLPNDFLDWATALGTVNLRDDAFHAFARNQELFLRITMTSLRKLPMAFMRHLGQIPQLGIDISHNQLSTLNPAIFYPNFTSWSQVATKLLSGGLILTGNPLECECELAWLGAWLRRWLQENEAGAELRRAVREASCKDQLGRRIPLLQLRADEAECHASALSSDAQLNHKKMLHTFIAAIWILIFR

Uniprot

H9JCP9 A0A194QS75 A0A2A4JKM1 A0A2S2R4K0

Pubmed

19121390 26354079

EMBL

BABH01034675 KQ461155 KPJ08169.1 NWSH01001260 PCG71950.1 GGMS01015681 + More
MBY84884.1

Proteomes

UP000005204 UP000053240 UP000218220

PRIDE

H9JCP9

Pfam

PF00560   LRR_1        + More
PF13855   LRR_8
PF13516   LRR_6

Interpro

IPR032675   LRR_dom_sf        + More
IPR000483   Cys-rich_flank_reg_C
IPR001611   Leu-rich_rpt
IPR003591   Leu-rich_rpt_typical-subtyp

Gene 3D

3.80.10.10

ProteinModelPortal

H9JCP9 A0A194QS75 A0A2A4JKM1 A0A2S2R4K0

PDB

2XOT E-value=1.1046e-05, Score=117

KEGG

101746982 no KO assigned | (RefSeq) chaoptin-like

GO

GO:0005515 GO:0000166 GO:0016020 GO:0016021 GO:0015935 GO:0004812 GO:0006418 GO:0003723 GO:0046872 GO:0003824

Length:

415

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.04265

Exp number, first 60 AAs:

2e-05

Total prob of N-in:

0.00551

outside

1 - 415

Pi

223.856918

Theta

164.199926

Tajima's D

-0.869484

CLR

0.396849

CSRT

0.164941752912354

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics