SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10284  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA007293
Annotation
PREDICTED:_meiosis_arrest_female_protein_1_homolog_[Bombyx_mori]
Location
Bomo_Chr17(+):6751109-6769103      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 2.236
 

Sequence

CDS
ATGAGTTTAAGCAGAAAGTTTGAAAGTCTAGGTTCTGGTAGCACTAAAGGAGCGAGAAGCCATTCAGCTCATGGCATTTCCAGAGGTATATCTAGTCCTTCCATGAAAATACCATTACCACCTCGATTATGGATAACAGATATAGAAGACGACTCATCAGATGATTTTGATAGTTGTTCGAGAGAAGATGGAGTCTTTACAGCTGAAAGAGCTAGAGTGCGGTCACGCCACAGGGTTCATAAACAAAGATCAGCTAGTGTGCCTATTGGAATATTTTGGGATATTGAGAATTGTCAAGTACCCCGTGGGTGCTCTGCAATAGATGTTGTAGCAGCAATCCGTGCCAAATTTCTAGCAGGGAGGAGAGAGGCTGATTTTGTGGTAGTATGTGATGTACGTAAGGAGTCTGCATTTAGATTGCAGGAGTTAAACGATGCGCAAGTAAGCCTGATTCACGTTTGCGGTACTCAGAAGAATGCAGCTGACGAGAAACTAAGGCAATGTATGCGTCGATTCGGAGAACTACACACCGCTCCGGCGTCGCTATTGTTGATCTCAGGGGATATCAATTTCGCAGCTGACTTGTCAGATTTTAGACATAGGAAAAATATGGAAGTAATATTGGTGCATAAACAGAACACATCGATGGCTTTAATAACGTGTGCAACTGCACATTATTGCTTTAATGATCTGACCGTCAACCTGCCCCGAAATCCAAAGATGTTAAGTTTTTCGAACGACGACGAAGAGGAACCGACATGTGTGATGCATGTATCGAATCTTCCGATGGACCAAACTCCTGAGAGGGTGTCCCGAAGACTGCGAAGGCTGGCCGATAATTGTGGAGGAAAAGTTCTACGGGTTATGGCGACCACGGCAATGTTACGTTTCCCAACACCGGACCATGCCTCGAGAGCCTTGAAGCGTATGGACGGTGAGGATGTTTTCGGTCGGAAAATAAGCACACGCTATGCACGTACCACGATACAGCCGACGTATTCCAGTGATGAAGGTTACAGTACCGCGCCCGCTGCTCTTCCCATGCCACGGGCTGCGTTTGTACCACCGGCCCACCAGGTGAGCGTGTCTGCTCAGGAGGCGAGCACGTGTGTGGCCCGCGAGTGGGCGCTGGCCTTAGAGCAGTTGCCGACTCCCACGCCGCCCCCGCTCGAGTTCTGCCCGCCTCCAGCGCCCAAGCCGCGCAAAATAAGGGGCACCCATGGCTCTGTTAATCTAGACCGATCGGGTTGTTCGTCGAGTAACAGCGGTGACGACAGCCGTAACCGGGACCACAGTCAAAGCCGGGCTGTCTCGCCCTGGAACTCGTCCGCCAGCTTCAGCGAGCACAGCGAAGGAGAACTGGAGCTCACTGAACTCACCGTCACTAACTTGCCGCCATACGAGCCGACCATTTTACAAGAAATGTTAACACAGCTGCTGAAGCAGTACGTGCCGGTGGTCCGCGTGTCGGTGTGGTCGGGCGGGGAGGGTCCGCTGGCGACGGTCGTGCTGCGCTCGGAGTGGGACGCGCGGCTCGCGATCGCGCGCGTGCACAAGCGCCGCCTCGACAACCAGTGGACCGGGCGCCGGCTCGAGCTGTCCCTGGGCAGGCCCTCCCCCGCGCCCAACCTAGACGTTCTGCGCGCTCGTCTCCGGGCCATCCTCCTCGACCAAAAGAACCACGCGTTGCCGCTCCTCCGCCTCCGTGACGCGTACGCCAGCCGTCACTGCTGCGCCCTGACCACATCCGATATCGCAAAAGTCAAGGACACGGTCGTCATCCACGAAGGCTTCGGCAGAATGGTTCAGTTGGTCGATTTGACGCCGGTCACCAGCGCCGAAATGGAGGAGGCTCCCTGGAAATGTCACATCCACGCGTCCATGAGTACGGGACAAGAGGACGGAAGTCGCATATTGCAGCCAGTTTACGTGGAGATATCGGCGTTGGCAAAAAACGTTCAAACGTTATTGGAGAATCACGGTGGAATTTTGCCATTGTTGAGTTTCGTCGAATGTTATGAGGCTACATTTCCAGCGTTGCTGTGTGACCCGCGCAGGGGTGTAGCTCTGGAGTTGTTGCTGCGCAGCGCCCCAATGTTTGAAGTCAAAGATATACCGTCGCGTCACCTCACTTGGCGGACCACGACCGTCGAAACTCCCCCAGAAAATACAAATCGCAGCGAAAGTTCCCGTTCAAGTGGTGATCGAGATCGACCGCGGACAGCGCCGGCGCTGGAGCCGATGCTGGCGTTGTTCGAGCGTGAACTCGTGGATTTACTGCGCAACGCTCCGCGCTGCTCCATCCCGTTCAGCAAACTGATCCCGGCTTTTCATCATCATTTCGGAAGGCAGTGCCGCGTCGCCGATTACGGATTCACGAAGTTGCCGGATTTATTAGCAGCTCTCGGCAATACTATAGTTGTTCTCGGCTCGGGTTCATCGCGCGTCATAACTCTCTCGGCGGCAGCTCAAAGCCGTCGCTGGACGTCGGACTTGGTGAAAATTCTGAAAACTGCCCCCGGTCGTTCGGTTCCGCCTCAAGATATTCCCGGACTGTTCCACACCGCGTTCGGACGGGCCTTCGCGCCGGCTGACTACGGGGTGTGTACGCTGGCGGAACTGATGTGTCGGGTGGGCGCCCACGCTGTCACCACGGCGCTGGACGGGTCGGTGGCCCTGCCGCGGCGGGCTCCCACTCCTGAAGAACGTGCCAGAACCGTGCAGTTTGCTATGCAGGCGGTAGAACTGTTATGCTACACGCCCAACCTCCGCATGGAGTTCTCGCGCCTGGTGCCCGCGTACCACGCGCACTTCGGCCGCCAGCTGCGCGTGGCCCACTACGGGTGCGTCAAGCTCGCCGAGCTGCTGGAGCTGGTGCCGGAGTCGCTGTGCGTGCACGCCGAGCCCGCCGGCGAGAGGACGGTGCGGCTGGCGGCGCGGCTGGCGCGGCCGGTGGTGGCGCAGCGACTCCGCGCCATCACACCCGTCTCGTTTTCCGCCTTCGCCGCCACGTACGCCAGTCATTTTGGAGCCCCACCACAGGCGGACATGTTGTCGGCGTCGACACTGGAGGGCTTGGTGTACGCGGCGGGCGGGTGCGTGGAGGCGGGCACCGTGGTGGGCCCGGGCGCGGCGCCGCACTGGGCGTCGGGCGCGCTGCTGGCGTGCGCGGCCCTCAGCGCCGATCGCAGCATCGCCCGCGCCTCCACCGAGGAGTACTTCGCGGCCGCGTGTCGCCGCCTGGGCGCTGAGCTCGAGCTGCGACGCCTGGCGCTGGCCGGCGTGCTGGTGGTGGACGAGACCGGCCGGGAGCGCCGCGTGCGGCTGGCGGCTCCGTGGCGCGTCGTCTGGAGGCTCGCTCAGATCATCGCGGACCGCGGTCAGCCCCTCGCTCCGCTCGACATCCTGGTCGACTACACGCGAAAATATGAACCCGTGTTTCCGGCTGCTGATACTGGGCTCGAAGGCGTCGTGGACTTCATGCGTCAGTACATGGAGATCTTCACGGAGGGCGGCGGGCGGTGGTCGCTGAGCGCGGGCGTGGCGGTGGCGCGCTGCCGGGACGCGCCGCGCGTGCAGGAGGACTACTCCGTGCACGACACGCCACCAGGACAAAAAGGTTCCAGGGTATTTGAGTCTCCCAAAACAAATATTTGGTGCTCTCCGCCGGCTAGCGCACTGCCGGCGCCATCGGCGCTGCTTAATCAAGAAAACAAACGTCGCACCCGCCTAGCGGCGCAGTTCGACGCTTCATAA
Protein
MSLSRKFESLGSGSTKGARSHSAHGISRGISSPSMKIPLPPRLWITDIEDDSSDDFDSCSREDGVFTAERARVRSRHRVHKQRSASVPIGIFWDIENCQVPRGCSAIDVVAAIRAKFLAGRREADFVVVCDVRKESAFRLQELNDAQVSLIHVCGTQKNAADEKLRQCMRRFGELHTAPASLLLISGDINFAADLSDFRHRKNMEVILVHKQNTSMALITCATAHYCFNDLTVNLPRNPKMLSFSNDDEEEPTCVMHVSNLPMDQTPERVSRRLRRLADNCGGKVLRVMATTAMLRFPTPDHASRALKRMDGEDVFGRKISTRYARTTIQPTYSSDEGYSTAPAALPMPRAAFVPPAHQVSVSAQEASTCVAREWALALEQLPTPTPPPLEFCPPPAPKPRKIRGTHGSVNLDRSGCSSSNSGDDSRNRDHSQSRAVSPWNSSASFSEHSEGELELTELTVTNLPPYEPTILQEMLTQLLKQYVPVVRVSVWSGGEGPLATVVLRSEWDARLAIARVHKRRLDNQWTGRRLELSLGRPSPAPNLDVLRARLRAILLDQKNHALPLLRLRDAYASRHCCALTTSDIAKVKDTVVIHEGFGRMVQLVDLTPVTSAEMEEAPWKCHIHASMSTGQEDGSRILQPVYVEISALAKNVQTLLENHGGILPLLSFVECYEATFPALLCDPRRGVALELLLRSAPMFEVKDIPSRHLTWRTTTVETPPENTNRSESSRSSGDRDRPRTAPALEPMLALFERELVDLLRNAPRCSIPFSKLIPAFHHHFGRQCRVADYGFTKLPDLLAALGNTIVVLGSGSSRVITLSAAAQSRRWTSDLVKILKTAPGRSVPPQDIPGLFHTAFGRAFAPADYGVCTLAELMCRVGAHAVTTALDGSVALPRRAPTPEERARTVQFAMQAVELLCYTPNLRMEFSRLVPAYHAHFGRQLRVAHYGCVKLAELLELVPESLCVHAEPAGERTVRLAARLARPVVAQRLRAITPVSFSAFAATYASHFGAPPQADMLSASTLEGLVYAAGGCVEAGTVVGPGAAPHWASGALLACAALSADRSIARASTEEYFAAACRRLGAELELRRLALAGVLVVDETGRERRVRLAAPWRVVWRLAQIIADRGQPLAPLDILVDYTRKYEPVFPAADTGLEGVVDFMRQYMEIFTEGGGRWSLSAGVAVARCRDAPRVQEDYSVHDTPPGQKGSRVFESPKTNIWCSPPASALPAPSALLNQENKRRTRLAAQFDAS

Summary

Uniprot
H9JCP7   A0A3S2LUL6   A0A2H1WLK0   A0A212EM15   A0A2A4JHD7   A0A194QB80   + More
S4PY70   A0A194QT11  
Pubmed
19121390    22118469    26354079    23622113   
EMBL
BABH01034655    BABH01034656    BABH01034657    RSAL01000189    RVE44735.1    ODYU01009447    + More
SOQ53887.1    AGBW02013944    OWR42532.1    NWSH01001441    PCG71229.1    KQ459232    KPJ02798.1    GAIX01003803    JAA88757.1    KQ461155    KPJ08140.1   
Proteomes
UP000005204    UP000283053    UP000007151    UP000218220    UP000053268    UP000053240    + More
PRIDE
H9JCP7   
Pfam
PF11608   Limkain-b1        + More
PF12872   OST-HTH
PF01936   NYN
PF00076   RRM_1
Interpro
IPR034189   Marf1_RRM1        + More
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000504   RRM_dom       
IPR041966   LOTUS-like       
IPR025605   OST-HTH/LOTUS_dom       
IPR024582   Marf1_cons_dom       
IPR024768   Marf1       
IPR021139   NYN_limkain-b1       
IPR035979   RBD_domain_sf       
SUPFAM
SSF54928   SSF54928       
Gene 3D
1.10.10.1880     3.30.70.330    
CDD
cd12255  RRM1_LKAP
ProteinModelPortal
H9JCP7   A0A3S2LUL6   A0A2H1WLK0   A0A212EM15   A0A2A4JHD7   A0A194QB80   + More
S4PY70   A0A194QT11  
PDB
5YAA     E-value=1.55854e-41,     Score=431

Ontologies

KEGG
101746703    K17573 meiosis arrest female protein 1 | (RefSeq) meiosis arrest female protein 1 homolog
GO
GO:0016021   GO:0003723   GO:0010468   GO:0005777   GO:0003676   GO:0000166   GO:0016020   GO:0015935   GO:0004812   GO:0006418   GO:0046872   GO:0003824  
PANTHER
PTHR14379  

Topology

Length:
1251
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.05512
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00064
outside
1  -  1251
 
 

Population Genetic Test Statistics

Pi
171.44537
Theta
168.994116
Tajima's D
-0.659973
CLR
10.358793
CSRT
0.203689815509225
Interpretation
Uncertain
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