Gene

KWMTBOMO10283  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007268

Annotation

PREDICTED:_proteasome_26S_non-ATPase_subunit_12_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr17(-):6743335-6749558      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 2.355

CDS

ATGACTACAAACGGAGATATCGGCGGTCTCGATGCTAGTGGAAAAATAATAAAAATGGAAGTGGACTATAGTGCAACATGTGATGAGAAACTGCCCTTGTGGAAATCATGGGCAGCCCAAGGCAAAATTCAAGAAGCTATCGATCAGTTATTGGCTCTTGAAAAACAGACTAGGACTGGTGCCGATATGGTTTCCACTTCAAGAATCCTAGTGACAGTGGTTCAGATATATTTTGAAGCTAAGAACTGGTCTGCTCTCAATGATCATATAGTTGTTTTGTCCAAAAGAAGATCCCAATTAAAACAAGCTGTTGTTAAAATGGTTCAGGAATGCTACACTTATGTAGACAAAACACCCGATAAAGAAACAAAGATAAAACTAATTGAAACATTGAGAACCATAACAGAAGGAAAGATCTATGTAGAAGTTGAAAGAGCGAGACTGACTCATATTTTAGCCAAAATTCGAGAAGAAGAAGGCAATGTAGCAGAGGCTGCAAAAATAATACAAGAACTTCAAGTAGAGACATATGGTTCAATGGACAAGAGGGAAAAAGTTGAGTTAATTCTGGAACAGATGAGATTGTGTCTTGCTATCAAAGATTATGTCCGTACACAGATCATATCAAAGAAAATCAATACAAAATTTTTTGAAGACGAAAATACTCAGGAGCTGAAAGAGAAGTTTTACCGACTGATGATAGCTGTGGACCAGCATAATGGACAATATCTGTCAGTCTGTCGGCATTTCCGAGCTTTAGGAACTGCTGGGGGCCCTGAAGCACTTATTGGCAGTGTTGTATTCCTTATATTGGCACCATATGACAATGAACAGGCAGATCTCACACATAGAGTAAATGAAGATAAGGAGTTGGATAAACTTCCTGATTATAAAGAATTGTTACGTCTATTCATAAATCCTGAGATCATCAGATGGAACACTCTATGTTCTTCTTACGAGAAGATGCTTCGGGCCACACCGTACTTTGACGCGTCAGACGACAAGGGTCAAGAACGCTGGAACGATCTTAAGAACAGAGTTGTTGAACATAATATTCGCATAATGTCAATGTACTATACTCGCATCACGCTCAAACGTATGAGTGAACTTCTTGGTCTGAGCGAGACGGAAACAGAAGAGGCCCTGAGTCAGCTTGTTGTGAGTGCAGTTGTTAAAGCCAAGATCGATCGTCCAGCTGGCGTTGTACACTTTAGCCTGAATATGGACGCGTCAGATCGTCTCAACGAATGGTCGAACAATCTGAACACATTGATGCAACTTGTCAATAAAACAACACATCTCATTAACAAAGAGGAATGCGTTCACAAACATTTGTTGGCTACTGCAGAGTAA

Protein

MTTNGDIGGLDASGKIIKMEVDYSATCDEKLPLWKSWAAQGKIQEAIDQLLALEKQTRTGADMVSTSRILVTVVQIYFEAKNWSALNDHIVVLSKRRSQLKQAVVKMVQECYTYVDKTPDKETKIKLIETLRTITEGKIYVEVERARLTHILAKIREEEGNVAEAAKIIQELQVETYGSMDKREKVELILEQMRLCLAIKDYVRTQIISKKINTKFFEDENTQELKEKFYRLMIAVDQHNGQYLSVCRHFRALGTAGGPEALIGSVVFLILAPYDNEQADLTHRVNEDKELDKLPDYKELLRLFINPEIIRWNTLCSSYEKMLRATPYFDASDDKGQERWNDLKNRVVEHNIRIMSMYYTRITLKRMSELLGLSETETEEALSQLVVSAVVKAKIDRPAGVVHFSLNMDASDRLNEWSNNLNTLMQLVNKTTHLINKEECVHKHLLATAE

Uniprot

H9JCM2   Q2F5W8   A0A3S2TFP1   A0A2A4IZ53   A0A2H1WLC9   S4P9I7   + More
I4DMA9   A0A194QS44   A0A194QBK9   D6WVQ2   A0A0T6B2B6   A0A1W4WEY9   A0A2J7PKP9   A0A067RIG7   A0A1B6ER76   A0A2P8XQ56   A0A1Y1MDM2   E0VNS1   N6TS51   U4TWV0   A0A0V0G3D9   A0A023F967   A0A069DZ24   A0A1S4E7U6   A0A224XP92   A0A0A9ZGG0   A0A0P4VSA9   R4G476   A0A2R7WXR0   A0A087UIR5   A0A0C5B0H1   A0A2R5LLC6   V5IA60   J9JUQ2   A0A131Z0W6   L7LZY7   A0A0C9PMI1   A0A171BB79   W5N823   E2AI04   T1J1H9   A0A131XDL0   A0A3L8DIS9   E2BW38   A0A3P9JTW7   A0A3P9LHH5   A0A1Z5KWS0   A0A131XVD4   A0A3B3RUB1   A0A0S7G0W9   A0A3B3DB81   A0A2B4SU00   A0A3M6UQ20   A0A3Q2YD84   A0A0B8RWM7   V8NWQ4   E9GVL8   A0A3Q3VQH3   A0A3Q3GI97   A0A3B3HKL0   A0A1A7WW76   I3JH38   A0A164ZVQ4   A0A3Q2GEL9   A0A2I4BWH2   A0A3P9MSX1   A0A1A8J2H2   A0A1A8DY44   A0A1A8G6P6   A0A1A8ARA8   A0A3Q1HZ04   A0A087Y5S0   A0A1A8QZC0   A0A1A8L461   A0A0N7ZJY8   A0A0P6I624   G3Q3S8   A0A3B3UV04   E9IJF3   A0A3Q3MFH1   H3CHW8   A0A0F7Z0Z0   A0A2R2YUM9   A0A3S2PH67   A0A3B5QXX0   A0A3B5AGZ2   A0A146MTG9   A0A3B4UB02   Q4T0S8   W5KWC5   A0A3B4DDI3   A0A3P8S093   A0A0P7UVL0   A0A3B5KFX6   A0A3Q3F8P0   A0A2U9BP45   A0A232FK97   A0A3Q1FXJ6   C3Z7L1   K1QQK1  

Pubmed

19121390    23622113    22651552    26354079    18362917    19820115    + More
24845553    29403074    28004739    20566863    23537049    25474469    26334808    25401762    26823975    27129103    25653432    26830274    25576852    20798317    28049606    30249741    17554307    28528879    29652888    29240929    29451363    30382153    25476704    24297900    21292972    25186727    21282665    15496914    23542700    25329095    21551351    28648823    18563158    22992520   

EMBL

BABH01034655    DQ311305    ABD36249.1    RSAL01000189    RVE44734.1    NWSH01004502    + More
PCG65041.1    ODYU01009447    SOQ53885.1    GAIX01003739    JAA88821.1    AK402427    BAM19049.1    KQ461155    KPJ08139.1    KQ459232    KPJ02799.1    KQ971358    EFA08601.1    LJIG01016203    KRT81307.1    NEVH01024535    PNF16906.1    KK852663    KDR19074.1    GECZ01029351    JAS40418.1    PYGN01001553    PSN34115.1    GEZM01036699    JAV82415.1    DS235346    EEB15027.1    APGK01056791    KB741277    ENN71126.1    KB631786    ERL86079.1    GECL01003539    JAP02585.1    GBBI01000670    JAC18042.1    GBGD01001385    JAC87504.1    GFTR01006443    JAW09983.1    GBHO01002539    GBRD01014104    GDHC01010693    JAG41065.1    JAG51722.1    JAQ07936.1    GDKW01001254    JAI55341.1    ACPB03005390    GAHY01001021    JAA76489.1    KK855644    PTY23395.1    KK119981    KFM77254.1    KM999969    AJK90584.1    GGLE01006200    MBY10326.1    GALX01001750    JAB66716.1    ABLF02036253    GEDV01004182    JAP84375.1    GACK01007413    JAA57621.1    GBYB01002293    JAG72060.1    GEMB01000041    JAS03068.1    AHAT01000495    GL439621    EFN66912.1    JH431785    GEFH01004393    JAP64188.1    QOIP01000007    RLU20350.1    GL451091    EFN80070.1    GFJQ02007431    JAV99538.1    GEFM01004542    GEGO01001134    JAP71254.1    JAR94270.1    GBYX01459740    JAO21819.1    LSMT01000028    PFX32032.1    RCHS01001049    RMX55448.1    GBSH01002134    JAG66892.1    AZIM01001571    ETE66401.1    GL732568    EFX76433.1    HADW01008573    HADX01001392    SBP09973.1    AERX01050221    LRGB01000687    KZS16839.1    HAED01017256    HAEE01014724    SBR03701.1    HADZ01009847    HAEA01010372    SBQ38852.1    HAEB01020350    HAEC01005908    SBQ66877.1    HADY01019074    HAEJ01013570    SBP57559.1    AYCK01011808    AYCK01011809    HAEI01006736    HAEH01017554    SBR98857.1    HAEF01002040    HAEG01015735    SBR39422.1    GDIP01238033    JAI85368.1    GDIQ01025965    JAN68772.1    GL763766    EFZ19304.1    GBEW01000762    JAI09603.1    KM522790    AKN80416.1    CM012437    RVE75679.1    GCES01163359    JAQ22963.1    CAAE01010875    CAF93504.1    JARO02000460    KPP78479.1    CP026250    AWP05907.1    NNAY01000124    OXU30747.1    GG666591    EEN51366.1    JH817356    EKC39252.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000053240    UP000053268    UP000007266    + More
UP000192223    UP000235965    UP000027135    UP000245037    UP000009046    UP000019118    UP000030742    UP000079169    UP000015103    UP000054359    UP000007819    UP000018468    UP000000311    UP000279307    UP000008237    UP000265200    UP000265180    UP000261540    UP000261560    UP000225706    UP000275408    UP000264820    UP000000305    UP000261620    UP000264800    UP000001038    UP000005207    UP000076858    UP000265020    UP000192220    UP000242638    UP000265040    UP000028760    UP000007635    UP000261500    UP000261640    UP000007303    UP000002852    UP000261400    UP000261420    UP000018467    UP000261440    UP000265080    UP000034805    UP000192224    UP000005226    UP000261660    UP000246464    UP000215335    UP000257200    UP000001554    UP000005408   

PRIDE

H9JCM2    Q2F5W8   

Pfam

PF18098   RPN5_C        + More
PF01399   PCI

Interpro

IPR035297   PSMD12        + More
IPR000717   PCI_dom       
IPR036388   WH-like_DNA-bd_sf       
IPR040896   RPN5_C       
IPR036390   WH_DNA-bd_sf       
IPR040134   PSMD12/CSN4       

SUPFAM

SSF46785   SSF46785       

Gene 3D

1.10.10.10    

ProteinModelPortal

H9JCM2   Q2F5W8   A0A3S2TFP1   A0A2A4IZ53   A0A2H1WLC9   S4P9I7   + More
I4DMA9   A0A194QS44   A0A194QBK9   D6WVQ2   A0A0T6B2B6   A0A1W4WEY9   A0A2J7PKP9   A0A067RIG7   A0A1B6ER76   A0A2P8XQ56   A0A1Y1MDM2   E0VNS1   N6TS51   U4TWV0   A0A0V0G3D9   A0A023F967   A0A069DZ24   A0A1S4E7U6   A0A224XP92   A0A0A9ZGG0   A0A0P4VSA9   R4G476   A0A2R7WXR0   A0A087UIR5   A0A0C5B0H1   A0A2R5LLC6   V5IA60   J9JUQ2   A0A131Z0W6   L7LZY7   A0A0C9PMI1   A0A171BB79   W5N823   E2AI04   T1J1H9   A0A131XDL0   A0A3L8DIS9   E2BW38   A0A3P9JTW7   A0A3P9LHH5   A0A1Z5KWS0   A0A131XVD4   A0A3B3RUB1   A0A0S7G0W9   A0A3B3DB81   A0A2B4SU00   A0A3M6UQ20   A0A3Q2YD84   A0A0B8RWM7   V8NWQ4   E9GVL8   A0A3Q3VQH3   A0A3Q3GI97   A0A3B3HKL0   A0A1A7WW76   I3JH38   A0A164ZVQ4   A0A3Q2GEL9   A0A2I4BWH2   A0A3P9MSX1   A0A1A8J2H2   A0A1A8DY44   A0A1A8G6P6   A0A1A8ARA8   A0A3Q1HZ04   A0A087Y5S0   A0A1A8QZC0   A0A1A8L461   A0A0N7ZJY8   A0A0P6I624   G3Q3S8   A0A3B3UV04   E9IJF3   A0A3Q3MFH1   H3CHW8   A0A0F7Z0Z0   A0A2R2YUM9   A0A3S2PH67   A0A3B5QXX0   A0A3B5AGZ2   A0A146MTG9   A0A3B4UB02   Q4T0S8   W5KWC5   A0A3B4DDI3   A0A3P8S093   A0A0P7UVL0   A0A3B5KFX6   A0A3Q3F8P0   A0A2U9BP45   A0A232FK97   A0A3Q1FXJ6   C3Z7L1   K1QQK1  

PDB

6EPF     E-value=8.41058e-136,     Score=1240

KEGG

692900    K03035 26S proteasome regulatory subunit N5 | (RefSeq) proteasome 26S non-ATPase subunit 12

PATHWAY

03050    Proteasome - Bombyx mori (domestic silkworm)

GO

GO:0000502   GO:0005737   GO:0008541   GO:0043161   GO:0031595   GO:0005515   GO:0016020   GO:0016021   GO:0015935   GO:0004812   GO:0006418   GO:0003723   GO:0046872   GO:0003824  

PANTHER

PTHR10855   PTHR10855:SF1  

Length:

450

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.27823

Exp number, first 60 AAs:

2e-05

Total prob of N-in:

0.00560

outside

1  -  450

 

 

Pi

222.360733

Theta

204.173353

Tajima's D

0.404046

CLR

0.069919

CSRT

0.491975401229938

Interpretation

Uncertain