The Silkworm Genome Information Database

Gene

KWMTBOMO10276 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA007288

Annotation

PREDICTED:_RAD50-interacting_protein_1_[Amyelois_transitella]

Location

Bomo_Chr17(+):6640259-6653065 View in EpiBrowser

Location in the cell

Cytoplasmic Reliability : 1.601 Golgi Reliability : 1.167 Nuclear Reliability : 1.191

CDS

ATGAATGATGATGAGAAAAATGCTATTATTCAAGAACTTAATTTTAAGATCGGAAGTGATATTAACGAATTGGGTAGTACATTTGCTCTGGAAAGTGAGTTAGCTGATAAAAGAGATAAACTTTTAAGCTGTCTAACGGTGGCCAACAATGAGGTGCCTACAAAATTATCAGTTGCAATTAAAAATGCTGAAGTTAATTCAATGCAAATACAAAACTTGAAAGTAATAAGTAATGAGTTGAGAAAAAGAGTTGCAGTATTCTTGGAGCAGACAGAACCATTACGAGCTGAAATGGAAAGAAAGTTTCATGCTATAAATAAGTTATATGAAATAATTGAATATTTGAGATCTTTTGAGAAAGTAGATGATTTAAGTCGACAAATGAAACAGAGTAGTGATGATGAACAACTTGTGCTACTATATGGTGAACTGAAGCATATGTGCCAATTATACCAGAAGGGTCACAGAGGAAACTATGTAAAGGAATACACTCACTATTGGCATAATGTGCTAAAAGATAAACTGACACAACACTTTGATGAGGTAATGAAATTACTGAAATGGCCTTTTATAAGTGGAGCTGAACATTCCCCACCTCCCAAAGAAGTTATGATTAAGTTCACAAATCTCATTAGATATTTGTTTTTGATTGAAGAACCTGAAGACTTAAACATAAATGCTGCTGTTGCCCAAGATTTTGGTCAAGAACTAAACCCATGTTTGCCTGTTCGTGTTCTCTTAAGGCCGTTAAAGAAGAGATTTGCATTTCATTTCATGGGGTCCAGACAGACAGCTCGCATTGATCGACCAGAGTGGTTTCTCACTCAAACATTAACCTGGATAAAGGACCATCAGAACTTTGTTCAAAATAATGTACAACCAGTTGCTGATAAACTTGAACTGGACAATGTTAATGCAGTGGATCAATTCAATGCTGGTCTAATATCGCTAGCTGCAGAAAGACTTCACACAATTATAGCTTTGTATCATACACAAGGCACCAAAAGGGAGGTAGTCGATGCAGATGCCGCTTTCGCACATGCTGTCGACGAAATACTAGGATTTAATAGAGAACTGAGTACACTGACCGGAAAAGAAATAAATAGTATACTCTCGGTGCTGACTAAGGCGGAGACTTTTGTAAGGTGGTTGGCTGTTGAGAAGAAATATGCACTAAGTAAAATGGATGAGATATTGGGCAGCGACCAGTGGACCGAGCCCGTGGTGACGGGGACGGGCGTGGCTACGGGCGCCATCTTGTGGGTGCCGCGGGCTGCCGACTGGTTCGTCACACTACTAAAGACTATCGAGGACAGATACGCTGTGTTGCCACAGCCTGGACACAGATTACAGTTTCTAGAACTTCAGCTAGAACTGCTGGAGGAGTGGCGCATCCGTTTAACGCAGCTGCTCAGTGCGGCCATGGACTCGCTGGTGCCTGAAACGTTCCTGTCGCCAGGACCCACGTCGCATCCTCTCATAGCGGTCACCAATACGGCCCATCACTCGCGGATCGTGCTGCTGCAGTGGGCTAACTCATTGCATTACCTCCAGTTGCACTACTACAGGCGGCAGTTCCAGCACTTCACACAGCAGCAGCATCATGAAGATAGCTCGATTTCGTCTTCAAGCTCTGATGATGATGATGACGATGACGACAGCAGCGAAGGACACACTAAGAAAGCTTCTAGAGCAGACGAAACGATGTCCTTAAAAGAAGTCGAACTGCGAGCGAAGAAGCTCGCGCTGAATGAAATGATCCGGAGGGATTCGATGATACACGAGCAACTGTACGACATCACTGCTCCGATAGCAAACCTCGCCGTCACCGAACCTCTGTCAGGTGACGAGGATATGGAAGAAGCAGGAGTATTCGCCGAAGCACCAGCCTTACTATCTCGATTACTTAATGCAGCCTTAGACGCGATTTCTGAACACATAACATTAGAATTCAAGGCCAGTATAAGGGACTACAAGAAACAAAAGTGGCACAATCTGCCCGTAGTCGAGGAGCTGGCGCTGACGGTGTCGCCGGCTCTGTGCGCGCCGCTGTCCGGGCTGAGCGCGCGGCTGTCGTCCGTGAGCGCGCGGCTGGCTCCCTGCCTCGCCGTGAGACTCCGAGCGCAATTAGCCACTAACGTCGACCGATGTTTGTTTGAGACGGTGGTACTAGAGAATTGGTTCAACACCGGCGGCACTATGCAATTCACGTTTGACGTGAAACGAAATTTAGTCCCTACGTTCGCTCCGCCGAGCAAAGTGGCCTCGCAAATGAACCAATTGCCCAAGTTGCTCGAGTCCTGTAAACTCCTGAACCAGGACTACGAGGACGCTCGACGTCTCCGCGACATGCTGGAGAGGAAGCCGGAGCTGGCAAGAGACTTTCTGGGCAACCAGGGCATTACCTCGATCACAGGGATGGAAGCACTACAGATACTGAACCAGAGAACGGACCTGTGCGACACTAACAGCGCAGCTTCTGTGCTGGAACTATTCTGA

Protein

MNDDEKNAIIQELNFKIGSDINELGSTFALESELADKRDKLLSCLTVANNEVPTKLSVAIKNAEVNSMQIQNLKVISNELRKRVAVFLEQTEPLRAEMERKFHAINKLYEIIEYLRSFEKVDDLSRQMKQSSDDEQLVLLYGELKHMCQLYQKGHRGNYVKEYTHYWHNVLKDKLTQHFDEVMKLLKWPFISGAEHSPPPKEVMIKFTNLIRYLFLIEEPEDLNINAAVAQDFGQELNPCLPVRVLLRPLKKRFAFHFMGSRQTARIDRPEWFLTQTLTWIKDHQNFVQNNVQPVADKLELDNVNAVDQFNAGLISLAAERLHTIIALYHTQGTKREVVDADAAFAHAVDEILGFNRELSTLTGKEINSILSVLTKAETFVRWLAVEKKYALSKMDEILGSDQWTEPVVTGTGVATGAILWVPRAADWFVTLLKTIEDRYAVLPQPGHRLQFLELQLELLEEWRIRLTQLLSAAMDSLVPETFLSPGPTSHPLIAVTNTAHHSRIVLLQWANSLHYLQLHYYRRQFQHFTQQQHHEDSSISSSSSDDDDDDDDSSEGHTKKASRADETMSLKEVELRAKKLALNEMIRRDSMIHEQLYDITAPIANLAVTEPLSGDEDMEEAGVFAEAPALLSRLLNAALDAISEHITLEFKASIRDYKKQKWHNLPVVEELALTVSPALCAPLSGLSARLSSVSARLAPCLAVRLRAQLATNVDRCLFETVVLENWFNTGGTMQFTFDVKRNLVPTFAPPSKVASQMNQLPKLLESCKLLNQDYEDARRLRDMLERKPELARDFLGNQGITSITGMEALQILNQRTDLCDTNSAASVLELF

Uniprot

H9JCP2 A0A2A4J1C9 A0A212FF16 A0A2H1WS95 A0A194QBL4 A0A194QRJ6 + More
A0A0B6ZWY6 A0A1S3HZV7 A0A0L8I0Q7 A0A2T7PYP2 A0A2G8LF37 A0A3R7MG28 A0A1V9Y0L0 A0A3Q2XRD4 I3K9N6 A0A3P9CTN3 A0A3P8PW81 A0A3B4GB43

Pubmed

19121390 22118469 26354079 29023486 28327890 25186727 + More

EMBL

BABH01034646 NWSH01003662 PCG65967.1 AGBW02008878 OWR52310.1 ODYU01010612 + More
SOQ55842.1 KQ459232 KPJ02804.1 KQ461155 KPJ08133.1 HACG01026234 CEK73099.1 KQ416810 KOF95093.1 PZQS01000001 PVD38545.1 MRZV01000099 PIK58853.1 QCYY01001773 ROT75454.1 MNPL01001350 OQR79240.1 AERX01038202 AERX01038203 AERX01038204 AERX01038205

Proteomes

UP000005204 UP000218220 UP000007151 UP000053268 UP000053240 UP000085678 + More
UP000053454 UP000245119 UP000230750 UP000283509 UP000192247 UP000264820 UP000005207 UP000265160 UP000265100 UP000261460

PRIDE

H9JCP2

Pfam

PF04437 RINT1_TIP1

Interpro

IPR007528 RINT1_Tip20

ProteinModelPortal

H9JCP2 A0A2A4J1C9 A0A212FF16 A0A2H1WS95 A0A194QBL4 A0A194QRJ6 + More
A0A0B6ZWY6 A0A1S3HZV7 A0A0L8I0Q7 A0A2T7PYP2 A0A2G8LF37 A0A3R7MG28 A0A1V9Y0L0 A0A3Q2XRD4 I3K9N6 A0A3P9CTN3 A0A3P8PW81 A0A3B4GB43

KEGG

101746141 K20474 RAD50-interacting protein 1 | (RefSeq) RAD50-interacting protein 1

GO

GO:0048193 GO:0005783 GO:0016020 GO:0016021 GO:0015935 GO:0004812 GO:0006418 GO:0003723 GO:0046872 GO:0003824

PANTHER

PTHR13520

Length:

832

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00725

Exp number, first 60 AAs:

0.00041

Total prob of N-in:

0.00023

outside

1 - 832

Pi

228.102255

Theta

158.497348

Tajima's D

0.587725

CLR

0.371176

CSRT

0.543422828858557

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics