SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10271
Annotation
reverse_transcriptase_[Lasius_niger]
Location in the cell
Nuclear   Reliability : 4.143
 

Sequence

CDS
ATGGAAGCAAGACTTAAAGAGAAATTACCCCAGGAGGGTACCGGCGATGCCGGAGAATCCGTCCCTGAGCTTAGCTCAGGCTGCCCCGCGTATTCTGGGGGGGGCAAAGTAGTGCTGTCTGTGGAAAAACCAACAAAAACTTTGACCCAACAGTTATTTCACCCGGGTCTTTTTAATCGCCAACGATCCGCGTCATTGAGTGATGCCAGAGAACTAATTAAAAAACACAATGACAAACAACAAGAAAAAGTCAACGAGCAGGAAAACAATGTGACTGATTTACATAATCCAAATATCCCATGGCAACGAATGCCAAACCAAAAAAGGAACCGTTCTCCTGAGGAAAATTCGCTTTCTAAATCTAATGAAGCCAAAAGGTTACATACAAGAAACCAACTGATCAGCCAAAACAGAGACATTACTGAATCTACAAGTAGACAAAGTCCAGAAATAGAAACAAGTAATCGTTACTCAATATTAGATGTTGAAGCTGATGACTCGGCTTTACCAAAGAAGACCCCCAAACCGCCACCCATTATACTATATGGTATTGAAGACCTTGCCAAATTAACAGAATTAATAGAACAAGTGTTGGAAAAGAATGACTACACCTTTAAAGTATCATCTAAAGACCAACTCATCATATCCTCTGCCACAATTGACAAGTATAAAATCCTTATAGAGCATATCAGAGCTAGAGGGCTAATAGGCCATACATTCACACGAAAGGATCAAAAATGTATGCGGATAGTAATCAAACATCTACACTTTAGCACACCTAAAGATGCCATCATTGATGCAATAGAGAAGACAGGTAACAAAGTACAAGGAGAGATCGTCACTGCACGAAAACCTGGCACCAAAGAACCATTAAATACATTTTTTGTCAATGTAGCATCCCATGAAAATAATAAACGTGTCAAAGATATAAAATTCATTTACTACCAAAAAGTAAAAATAGAAGACCCGAAACGAAAGACAACTATAGTACAGTGTACAAGATGTCAACAATATGGGCACAGCAAAAATTATTGTATGCGCCCATATAGATGCGTAAAATGTGCTGGTCCACATAAGACAACATTGTGCACTATAGACAAAAATACCCCAGCTGTGTGCACTCTCTGCTCAGGAAGTCATCCTGCTAGTTACAAAGGATGTATGGTATACAAAGAAATTCTTACAAGGAAGAAAATGGCTAATAAACCTAACTCGAAATACAAAATCAACTCTCTTGCTACAAAAGATCCAACAGTATATAACGATACCCAAATAGAAACTGAAAAAGAAAGAAAAGTAAAAACCACGAAACAGCATGCTACTGTTCAAGAAAGTTTAAAACAATACAGTGAGGTTGTTAAAAAAGGTTTTGAAAATTCATCTCTCAGGAATCATACTTATGATCCAATCAAATATAAAAAAGATACGCAGGATCATCAGACATCATGGCCTTTAGATAACAGTACAGAAACACAGAGATCAGATACATACATAAATAGACATCAGCCAAGAACACAAAAACCTATGACAAAATACAACGATGACAATATGTCACAGAGAACACAATTAAAAAAAATAGATAGCGACAATGACACTCGAGAGCAAATACTTATGTTAGAAAAGGTCATAACAAGACAATCTGAAAGAATTGACCAACTTATAACACAGCTAAACACAATGATGAACCTTATCATTACACTCGAGCTAGAAATCTTGCTCAAGCTTAATAAAATAGACATTGCGCTAATATCAGAAACTCATCTTAATGACAATAGAACAATTTTGATAGATAACTATAGTGTATATAACACAAATCATCCTGATGGAACTTCACATGGAGGAACCGCCGTTCTTATTAAAAATAACATAAGGCATAATGTACACAGTGCTTTTCGAGAGGAATGGCTTCAAGCTACTACTATAACTATAAACGAAAAGTTTGGGCCTATTAACATCAGTGCTATCTACTGTCCACCAAAACACAATCCTAAGCAAGATATGTTTAATAAATTCTTCAACACTTTGGGCAATAAATTTATAAGCGGAGGTGATTGGAACTGCAAGAATACATTCTGGGGATCACGGTTGACAACTACTAAGGGACGTGAACTAAAAAAAAGTGCTGATGATTGCAAGCTAACAATCCTTGGAACAGGTGAACCTACCTACTGGCCAACAGATACAAATAGACTTCCAGATCTGGTGGACTTTTTTATAATAAAGGGTCTTTCATATGTATATTTTGAAGTTGAGTCATCACTTGATTCTGTGTCGGATCACACTCCTGTCATAGCAACATTTAGCATCTCACCTATACAAAAAGAACAAAAAGAAGTACTATATAATTATAAAACAGACTGGAACTCATTCAGCGATTATCTAGAGGAAGAAATTAAACTTAGTGTTAAACTTAAAACAGAAGAAGATATAGATGAGGCAACATTTTATATCACAAACCTCATTCAAGTGGCTGCGTGGCATTCCACTCCAAAATTAAGCGATCATAATGTTAGTAATAATATACCTATGGAAATACGCCACAAACTTCAAGTAAAGAGAAAGCTAAGAAGGCAACTCCACATGACAAGATCCGATACAGACAGAAAAGAATTTAATAAAATCTCAAGAGAACTAAAAGAACTAATCAATGAATCTGTCAACTCAGCATTTCATCATAAAATATCAGGGCTCTCAGCATACAAGAAGGACAATTATTCTTTATGGAAAATCACCAAAAACTTCAAAAAACCTAAAAGCCATATTCCACCAATGAGGAAATCGCCAACCGACCCTTGGGCCAAGAGTACAACTGAAAAAGCTGAGCTATTTGCAAATTACTTGTATGAAATATTTACCCCTAACCTATCACCAATGGAGGACTATGAAAAAGAAGTTGATGTCATGATTAATAGTGACCAGCAGCTATCCCTGCCACTCAAATCCGTCACCCCCAGGGAACTTACGCAATGTATACAGTCTCTTAAAAATAAAAAAGCTCCTGGTTTTGATTTAATAACTGGTGAGGTACTTAAAAAATTGCCCAAAAAAGTAATAATATTTTTAACAATGTTATTCAATGCTATCCTCAGAGTACATTATTACCCAAAACTCTGGCAAATAGCACAAGTCTGCATGGTTATAAAGCCTGGAAAACCAGCGTCAGATCCAAGTTCATATAGGCCCATAAGTCTTCTACCTGTGTTGTCTAAGGTGTTTGAAACGGTATTTCTAAAAAGACTGAAGCCGCTTCTTGACCAGGAAAAGATTATACCGGATCATCAGTTTGGATTTCGGGCGAAGCATTCTACTGTCGAACAAGTACACAGAGTAGTTCATAAAATTCGACAATCCTTAGAAAAGAAGGAATACTGTTCTGCGGCATTTATTGACATCAAGCAAGCTTTCGATAAAGTCTGGCATAAGGGATTACTATATAAATTGAAAACCCTCCTACCGAATTCTTTTTTCATGCTCCTGAGATCCTACTTAAAACACAGAAAATTCCAAGTCAAATTTGGAGAGGACTGTTCGAAGCTGTATAATATTAACGCCTCCGTACCCCAGGGATCAGTGCTTGGTCCGGTCCTGTTTTCTATCTATACTGCAGACCTGCCTCAATCCCAAGATGTTGTAACTGCGACTTACGCTGACGATACAGCTTGTCTGGCAAGTGACATAGATCCACATAATGCATCATTACAACTACAAGTACAGCTTGACAAAGTAGATGCTTGGCTGCAGAGATGGCGATTAAAACCTAGTGTAACTAAATCAACGCAGGTAACATTCACCCTCCGGAAAGGTGTCTGTGGCCCTGTTTACATGGAAGGTAAAGCTTTACCAAATGCCGACTCTGTGAAATACTTGGGATTACACCTCGACAGAAGATTAACCTGGGCGAACCATATAAAAGCAAAAAAACGAGAAGCGAACTTGCAATTTCTCTCTTTGAATTGGTTACTGGGACGCCGGTCTCCACTGTCACTAAGTAACAAACTCCTGGTCTACAAAGCGATTATAAAACCTGTCTGGACTTATGGAATAGAACTGTGGGGTTCCGCTAGCAACTCGAATATCGAGATCTTACAGAGATTCCAGAACATTGCTCTTAGAACTATCTCAAACGCGCATTGGTTTGTAAGAAATAGTGAGATTCACGAATACTTAGAAATGCCGACTGTTCGAGAGGAAGTCAACAAGAACAGCAAGAGATATAAGGAAAGACTAAATGAGCACTCAAATGAATTGGCAAGGTGCCTGCTAGACACAACTGGAGATGTGAAACGTTTAAAAAGATGGCAAATTTTAGACTTAGACCAAAGATACTAA
Protein
MEARLKEKLPQEGTGDAGESVPELSSGCPAYSGGGKVVLSVEKPTKTLTQQLFHPGLFNRQRSASLSDARELIKKHNDKQQEKVNEQENNVTDLHNPNIPWQRMPNQKRNRSPEENSLSKSNEAKRLHTRNQLISQNRDITESTSRQSPEIETSNRYSILDVEADDSALPKKTPKPPPIILYGIEDLAKLTELIEQVLEKNDYTFKVSSKDQLIISSATIDKYKILIEHIRARGLIGHTFTRKDQKCMRIVIKHLHFSTPKDAIIDAIEKTGNKVQGEIVTARKPGTKEPLNTFFVNVASHENNKRVKDIKFIYYQKVKIEDPKRKTTIVQCTRCQQYGHSKNYCMRPYRCVKCAGPHKTTLCTIDKNTPAVCTLCSGSHPASYKGCMVYKEILTRKKMANKPNSKYKINSLATKDPTVYNDTQIETEKERKVKTTKQHATVQESLKQYSEVVKKGFENSSLRNHTYDPIKYKKDTQDHQTSWPLDNSTETQRSDTYINRHQPRTQKPMTKYNDDNMSQRTQLKKIDSDNDTREQILMLEKVITRQSERIDQLITQLNTMMNLIITLELEILLKLNKIDIALISETHLNDNRTILIDNYSVYNTNHPDGTSHGGTAVLIKNNIRHNVHSAFREEWLQATTITINEKFGPINISAIYCPPKHNPKQDMFNKFFNTLGNKFISGGDWNCKNTFWGSRLTTTKGRELKKSADDCKLTILGTGEPTYWPTDTNRLPDLVDFFIIKGLSYVYFEVESSLDSVSDHTPVIATFSISPIQKEQKEVLYNYKTDWNSFSDYLEEEIKLSVKLKTEEDIDEATFYITNLIQVAAWHSTPKLSDHNVSNNIPMEIRHKLQVKRKLRRQLHMTRSDTDRKEFNKISRELKELINESVNSAFHHKISGLSAYKKDNYSLWKITKNFKKPKSHIPPMRKSPTDPWAKSTTEKAELFANYLYEIFTPNLSPMEDYEKEVDVMINSDQQLSLPLKSVTPRELTQCIQSLKNKKAPGFDLITGEVLKKLPKKVIIFLTMLFNAILRVHYYPKLWQIAQVCMVIKPGKPASDPSSYRPISLLPVLSKVFETVFLKRLKPLLDQEKIIPDHQFGFRAKHSTVEQVHRVVHKIRQSLEKKEYCSAAFIDIKQAFDKVWHKGLLYKLKTLLPNSFFMLLRSYLKHRKFQVKFGEDCSKLYNINASVPQGSVLGPVLFSIYTADLPQSQDVVTATYADDTACLASDIDPHNASLQLQVQLDKVDAWLQRWRLKPSVTKSTQVTFTLRKGVCGPVYMEGKALPNADSVKYLGLHLDRRLTWANHIKAKKREANLQFLSLNWLLGRRSPLSLSNKLLVYKAIIKPVWTYGIELWGSASNSNIEILQRFQNIALRTISNAHWFVRNSEIHEYLEMPTVREEVNKNSKRYKERLNEHSNELARCLLDTTGDVKRLKRWQILDLDQRY

Summary

Pfam
PF03372   Exo_endo_phos        + More
PF00078   RVT_1
PF07530   PRE_C2HC
Interpro
IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR036691   Endo/exonu/phosph_ase_sf       
SUPFAM
SSF56219   SSF56219       
Gene 3D
ProteinModelPortal

Ontologies

Topology

Length:
1442
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0955699999999999
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00001
outside
1  -  1442
 
 

Population Genetic Test Statistics

Pi
258.220977
Theta
177.933249
Tajima's D
1.828693
CLR
2.54521
CSRT
0.851657417129144
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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