Gene

KWMTBOMO10268

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr17(+):6314848-6316643      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.93

CDS

ATGTACGAGCAATTGGAAACAAAAGAAGGTCAAAAATGTATATTTAAGCTCGCTAAACAGCGTTCCTGGAGCACGAGGGATTCCACTAGATGTCGGGCTGTTAAAGATCCAAGTGGTGAGCTACTGTATAAGGATAATTATGTACTATCAGCTTGGCATCAATATTATGAACAGCTACTGAGCCCTACTCAAGCTGCTATACAGGTAACAAACATTGGACTTATACCTCCAATACGACCCAATGAGGTCAAAATGGCGTTAGAAAAGTTGGCCAACAAGAAAGCCACGGGACCGGACGGTATTCCAGTGGAAGCTTGGAAGTGCCTTCGCGAGCACGGAATCGAAACGCTCACCAAACTTTTCAACTGTGTGTTGCGCTCTTCCAAAATGCCAGCGGCGTGGAGATTGAGCACCATAGTTCCTATTTATAAGGGGAAGGGCAGTGAGTACGAATGTAACAACTATCGCGGGATAAAGCTGTTAAGCCATACTATGAAACTGTATGAAAGAGTGATTGACAGCCGCCTAAGATCAGAGTGTTCACTATCCAAAAATCACTATGGTTTTGTACAGGGCTTATCTATCACCGACCCTATTTTTGCTCTAAATACGATCGCTGAGGAGTATCGTGCGAAACTTCGGCCATTGTATGTCGCATTCTTAGATATGGAAAAGGCATTTGACCGTGTGCCAAGAGATACGATCTGGTGGAGCCTTCGCAAGAAGAATGTACCCGAACATTATGTTAACGTCATAGTTGACATGTACAGGGATGCGAGGTCAATGGTACGGACAGTAGTGGGTCAGACAAAACCAATAGCAGTTGCAGAAGGTCTGCATCAAGGTTCAGTACTGAGTCCCTTTCTGTTCGGCATGGTTATAGACTCACTCACTGAGGTGGCGCAGTCCTCAGCCACGTGGACTTTCATCTATGCAGACGACGTTGCTATCTGCACCGAGAGCCGCACAGAGCTACGAGAGGCACTCCTGTTGTGGAAACAGCAGTTACAGGCCGGTGGTCTAATATTGAGTGTTGCGAAGACACATTACATGTCTTTTAATGACCCAGATCCAGGTGACAACAGTCCGATTTCCATTGACGGTCAACTTGTAAACATGTGCGATCAATACAAGAGGATGCCCGTTAAGCTCAAGGGTATGATCTATAAGACCATAATAAGGCCTGTTCTTATGTATGGCAGCGAAACATGGGCGGCAACCAAAAGGAACGTGCATACCATTCAAGTTGCTGAAATGAAGATGCTGAGGTGGATGTGCGGCGTGACTAGGCTCGATAAAATTCGCAACGAGTACGTGCGTGGAAGTCTAGGTGTACGGGACATCGCTGACAAGATGCAGGAGAGTAGGCTGAGATGGTATGGTCACGTGAAAAGGAAGCCGCCTGACTACGTCGGAAATTTGGCGCTACTGCTCGACCTCCCCGGTGGGAGACCTAGAGGTGGACCCAAGACAAGGTGGAGGGACGTAGTGCTGAAGGACAAGAGAGAATGCAATGTTGCTGACGAGGATGTCGAAGACAGAGCGAAGTGGAGGAGTAAAGTTAGGAAAGCTGACCCCACCACCATGTGGGATAAATAG

Protein

MYEQLETKEGQKCIFKLAKQRSWSTRDSTRCRAVKDPSGELLYKDNYVLSAWHQYYEQLLSPTQAAIQVTNIGLIPPIRPNEVKMALEKLANKKATGPDGIPVEAWKCLREHGIETLTKLFNCVLRSSKMPAAWRLSTIVPIYKGKGSEYECNNYRGIKLLSHTMKLYERVIDSRLRSECSLSKNHYGFVQGLSITDPIFALNTIAEEYRAKLRPLYVAFLDMEKAFDRVPRDTIWWSLRKKNVPEHYVNVIVDMYRDARSMVRTVVGQTKPIAVAEGLHQGSVLSPFLFGMVIDSLTEVAQSSATWTFIYADDVAICTESRTELREALLLWKQQLQAGGLILSVAKTHYMSFNDPDPGDNSPISIDGQLVNMCDQYKRMPVKLKGMIYKTIIRPVLMYGSETWAATKRNVHTIQVAEMKMLRWMCGVTRLDKIRNEYVRGSLGVRDIADKMQESRLRWYGHVKRKPPDYVGNLALLLDLPGGRPRGGPKTRWRDVVLKDKRECNVADEDVEDRAKWRSKVRKADPTTMWDK

Uniprot

D7F169   C6Y4D5   A0A3P9IMA9   A0A3B3H692   A0A3P9MDZ4   A0A3P9JLZ1   + More
A0A3B3H6E8   A0A3B3IFA0   A0A3P9K727   A0A3P9K097   A0A3B3HVS1   A0A3P9H8W7   A0A3P9MAU2   A0A3B3HQ01   A0A3B3I8U4   A0A3B3HS69   A0A3B3IEV4   A0A3Q1HIZ5   A0A3P9IXB6   A0A3B3IM62   A0A3B3HVG5   A0A3B3IC01   A0A3P9M3S5   A0A3B3HSD0   A0A3B3HJN2   A0A3B3I2L1   A0A3P9H8X2   A0A3B3HXS2   A0A3B3HAF4   A0A3B3IC33   A0A3P9HQQ4   A0A3B3HV05   A0A3B3HPV6   A0A3P9IBQ3   A0A3B3HU59   A0A3B3IIA9   A0A3B3I0B4   A0A3B3IP13   A0A3P9K1J1   A0A3B3HIQ7   A0A3B3ILR3   A0A3P9M3G7   A0A3B3IA48   A0A3B3HP42   A0A3B3IP58   A0A3B3HGI6   A0A3B3H2V1   A0A3B3H879   A0A3P9MI82   A0A3P9K813   A0A3B3H5C8   A0A3B3HQP1   A0A3B3INX9   A0A3P9JUQ5   A0A3P9HCZ5   A0A3B3HFD6   A0A3P9HXH1   A0A3B3HGK1   A0A3B3I8S7   A0A3P9LQU2   A0A3P9JZH0   A0A3P9LFN7   A0A3P9MCH9   A0A3P9JLN9   A0A3B3HJZ3   A0A3B3ILX4   A0A3B3HLA9   A0A3P9MJS1   A0A3B3H3Q1   A0A3B3H9R7   A0A3B3H5B4   A0A3B3IIV8   A0A3P9J878   A0A3B3HQ23   A0A3P9L7K7   A0A3B3IBX6   A0A3B3HMM1   A0A3B3IJZ5   A0A3P9IG04   A0A3P9J399   A0A3B3IMV3   A0A3B3H9R1   A0A3B3HYL2   A0A3B3HTF4   A0A3B3HDP2   A0A3B3HEM1   A0A3B3IL83   A0A3B3ICX9   A0A3P9KEZ0   A0A3B3IEJ9   A0A3B3IDD8   A0A3B3H644   A0A3P9J289   A0A3P9K4Q4   A0A3B3HW87   A0A3P9LF91   A0A3B3HQW9   A0A3B3HQU7   A0A3B3IM16   A0A3B3HNW5  

Pubmed

20470440    17554307   

EMBL

FJ265554    ADI61822.1    CU462842    CBA11992.1   

Proteomes

UP000265200    UP000001038    UP000265180    UP000265040   

PRIDE

D7F169   

Pfam

PF00078   RVT_1

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10    

ProteinModelPortal

D7F169   C6Y4D5   A0A3P9IMA9   A0A3B3H692   A0A3P9MDZ4   A0A3P9JLZ1   + More
A0A3B3H6E8   A0A3B3IFA0   A0A3P9K727   A0A3P9K097   A0A3B3HVS1   A0A3P9H8W7   A0A3P9MAU2   A0A3B3HQ01   A0A3B3I8U4   A0A3B3HS69   A0A3B3IEV4   A0A3Q1HIZ5   A0A3P9IXB6   A0A3B3IM62   A0A3B3HVG5   A0A3B3IC01   A0A3P9M3S5   A0A3B3HSD0   A0A3B3HJN2   A0A3B3I2L1   A0A3P9H8X2   A0A3B3HXS2   A0A3B3HAF4   A0A3B3IC33   A0A3P9HQQ4   A0A3B3HV05   A0A3B3HPV6   A0A3P9IBQ3   A0A3B3HU59   A0A3B3IIA9   A0A3B3I0B4   A0A3B3IP13   A0A3P9K1J1   A0A3B3HIQ7   A0A3B3ILR3   A0A3P9M3G7   A0A3B3IA48   A0A3B3HP42   A0A3B3IP58   A0A3B3HGI6   A0A3B3H2V1   A0A3B3H879   A0A3P9MI82   A0A3P9K813   A0A3B3H5C8   A0A3B3HQP1   A0A3B3INX9   A0A3P9JUQ5   A0A3P9HCZ5   A0A3B3HFD6   A0A3P9HXH1   A0A3B3HGK1   A0A3B3I8S7   A0A3P9LQU2   A0A3P9JZH0   A0A3P9LFN7   A0A3P9MCH9   A0A3P9JLN9   A0A3B3HJZ3   A0A3B3ILX4   A0A3B3HLA9   A0A3P9MJS1   A0A3B3H3Q1   A0A3B3H9R7   A0A3B3H5B4   A0A3B3IIV8   A0A3P9J878   A0A3B3HQ23   A0A3P9L7K7   A0A3B3IBX6   A0A3B3HMM1   A0A3B3IJZ5   A0A3P9IG04   A0A3P9J399   A0A3B3IMV3   A0A3B3H9R1   A0A3B3HYL2   A0A3B3HTF4   A0A3B3HDP2   A0A3B3HEM1   A0A3B3IL83   A0A3B3ICX9   A0A3P9KEZ0   A0A3B3IEJ9   A0A3B3IDD8   A0A3B3H644   A0A3P9J289   A0A3P9K4Q4   A0A3B3HW87   A0A3P9LF91   A0A3B3HQW9   A0A3B3HQU7   A0A3B3IM16   A0A3B3HNW5  

PDB

6AR3     E-value=4.18807e-05,     Score=113

KEGG

105842995    no KO assigned | (RefSeq) RNA-directed DNA polymerase from mobile element jockey-like

GO

GO:0003964   GO:0004519  

Length:

532

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00928999999999998

Exp number, first 60 AAs:

0.0001

Total prob of N-in:

0.00225

outside

1  -  532

 

 

Pi

60.641654

Theta

117.768561

Tajima's D

-0.592619

CLR

0

CSRT

0.216289185540723

Interpretation

Uncertain