SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10255
Annotation
reverse_transcriptase_[Danaus_plexippus]
Location in the cell
Mitochondrial   Reliability : 1.482 Nuclear   Reliability : 1.68
 

Sequence

CDS
ATGGGTTCATTATTACACGTCAGAATCAACAATTCAATCAAAACAGTGGATGCAATCGGGATGGTCGGCTCCAACAAAGGTCATGGCTGTAAAGTCGGCTGGATAATAAAAACGACCAGGCTTGGCGAAAAAAAAAACATCTTCCACCCTAGGGTCACACATGTGTTCCCGAGGGACCTGGGCGGGCCCCCCGGCGCGCACTCTGCGTGGCCGGGGGCTCCGTCTGTGGGGGAGTTTTGCTGGACTTCCACCGGGCGCGTCCGTAGGTGGCGGATAACGGGATCCTCTGGGAACAGTCCCACTCCCAGGGGTATCGTCCGGTCTTTTTCGTTGCAAGGATTTCTAGGTGTTAGGAGGGTACCTCCCGCTCCGCGGGGGAGAATCCCTCCGTGCGGTCGAGCAATCGGCCGCACGCTGCCCCACCGTTTCTGGGGGGGCAAACATTGCCACGACGAAGGGGGCGACAGCACGGGTCGCGTAAGGGACAGAGTCCCCACCGTGCGCCTCGAACGCTGCGAGAGCCTGATCTCGCTCTACTCGGCGCGGAGCTCCGCAAGGGGCGACGCGTCCAGTGGGCGGGAGACGCCAGCGCTGTTCGTGGACAGTGCTCGACAGCGCACTAGACGGAAGAGGAAGTCGGCTCGTCAGCCGGCATCTGTCCCTCCGTCCGACTCCTCGGAAGGAGAGCCTGCTAGCGCCAAGTACATGGCGTTGGCGGAAGGGCCGGCGGCTGCTGCGGCGCCGCCCGTCACTGATTTTGAGAAACCATCGTCTTGCGGACTGGACGCTGCCTCCTCGGCGCAGTTCAGGGCCGCCTGCCGTGAGGCGAAAAATAAAAATAAAAATAGGAAACAAGAAGAGGTCGAGCGCTTACAGCGATCCCTGACGGAGGTGGGTCCCTCTGACCCCCTCCGAGCTTGTAAAATAGTCGGGAAGATAGTCGCGACCATTGCGGCTAAATCCAATGGAGGCCTCAAGGGCTCAGAAGTGTCGGCCATGAAATCGGCGGCCGCCACACTCGAGGAAAGGCTGCAGGACGTTGTGGACCGCACCACAACCGCGGAGACGGCGGGCTTGCGGCAAGAAGTGGCCCTGCAGCACGTCCGCCTTGAACAACTGGCGGAAGAGAATGGGCAACTTCGGGCGGAGAACGGACAGCTCCGCGTCGACATGGCCGAGCTACGAACAATGGTTGCCGATCTCATCGAGCGGCAACGCAGCTCAGCCCCTGTCCCTCCTTCGCCCGAAGCAGAAGGCCTCAATGAAGTCGAGGAGCTGAGGCGGCAGCTCCTTATACAGGAGGCAAGGAGCTCGACCGTTGAGCGCGCAAGACCGCCCCTCGCTCATGAGGTTAAAAACGGAGCTCCTACACCGGCACCCCGCAGGACTGTGGCCGCTAGAACGTATAGCGGCCCTAAAAAGGGCGCGACACCCGCGGCACGTCCGGCCGCTTCGGGGACCCAAAAAGATACGGGGGCACCAAAACCCGCCCCCGCAGGAGCACAAGTCACCGGCCAGCGTGAGACGCAGAAGACTGCTCCTGCGCCGTCCCAGCCTCCGAAGGCGGGGCCCGGCAGGAGCCGGACCAAGAAGAAGGGGCGGACCAATGCAGCCAAACCGGCACCGACCCCCCAGCCCCGCCCACTGCCCCCGGCCCCGGTAAACATGAACGAGGCCTGGACGACAGTGGTGCGGCGAGGGCCCAAAAAGGTGGCGGCGCCTCCTGCGCCGCGCCCCAAGCCCGCCCCTGCGGCCGCCGCTCCCCGCCAAGAGGGTCGAGCGGAGCCGAGGGGCCGAACTGGAAGAAGGAGGCCGCGCGCCCCGCGGTCGGCTGCAGTGGTAGTGGAGCTGCTGCCGGCCGGCAAAGAAAAGGGCATCACCTACCACGAGGTGATGACCCAGGCGCGCGGCGGCGTGAATGTGGACGCCCTCGGCGTGGAGGGGGGCATCAAGGTCCGGCAGACGGCCAACGGGGCTCGTCTTATAGAGTGCCCCGGCCCCAACACAAACGCCGCGGCCGAAAAATTGGCGGCCCGGCTGAGGGAGATCCTGCCGGACCCCGAGGTGGTGCGCATCGCGCGGCCCGTGAAGATGGGAGAAGTAAAAATCACGGGCCTCGACGAGTGCGCCACGAAAGAGGAGGTCGCCGCGGCCATCGCGTCGCAGGGCAACTGCGCCCTCGCCGACGTCAAAGTCGGAGAGCTCCGGGTGACATATTCCGGAACCCGGACGGCGTGGGCGCGTTGCCCGATTGCAACGGCGACCCTCCTGGCCACCCCTCCACAGGGGCGGCCTTCCGACAGCCCAGGAAGGCTGCGCGTGGGCTGGGTAGTGGCCCACGTGCAACTGCAGGAGAGCAGGCCGTGGCGTTGTCTTCGGTGCTTCGGCACCGGCCACGGCCTCGCCAAGTGCCCCTCGACCGTGGACCGCAGCGACCTGTGTTTCCGCTGCGGCCAACCGGGACACAAGGCAGCCTCCTGCACCACAGCCGCGCCGCACTGCGTCTTGTGCGACGCGGCTAAAAGGAAGGCCGACCACCGGGCCGGGGGCCCGGCGTGTAAATCCGCCCCCTCCTCTACCAAAACGAGGAGGGGCGGAAAGAAAAATAAAAAGAATAAGGAGAGGCCGGCTGCAACAAGGGCAGCCGGCGAGTCAGTTCCCGTCGCGGCTATTGTCGAGCCGCAGGGCGGGACAGACGAGGGAGCGATGGACGATCTCCTCGTCCACACCATGGCGGAGTGGTCAATCGACGTCGCTGTCGCCGCGGAGCCGTACTTCGTCCCCACCGACCAGGACTGCTGGATGGGGGACGTCGACGGCTCCGTGGCCATCGTACTAAGACAGTCCGCGGCGTTACCCCCCTTGGAAATGGTGGCCAGGGGACCCGGGTACGTCGCGGCTAGGATCGACGGGACCGTCGTAATCGGGGCGTACTTTTCTCCGAACAGGAGCCTCGCTGAATTCGAACGGTTTCTGGGCGGGCTTGAGGCGCTTTTACACCGCCTCGGGTCCCGCCCAGTCATCGTCGCGGGGGACCTCAATGCCAAGTGTACGGCTTGGGGCTCCCCCCGCACGGATTCGCGAGGCGAGGCCCTTTCGGAGTGGGCGATCGCGACCGGCCTCTGTCTCCTAAACAGAGGCACGGTCGCGACTTGCGTGCGGTGGAACGGGCAATCTCACGTGGACGTGACGTTCGCGTCCCCGTCCACCGTGCGCCGCACCCGCGGCTGGCGCGTACTCGAGGGGGCGGAGACGCTCTCGGACCACAGATATGTCCGATTTGAGCTCTCCGCCTCCTCTGCGTCGTCAACGTCGTCGACATTGTCTTCGGCGTCAGCCGCGGGCGCCCGCGGCGAGGAGGAGCTCCCGCAAGGTGCGCCCCGTTCGTTCCCCAGGTGGGCCTTGAAACGAATGAACAAGGAGTTGCTGATGGAGGCGGCCGCTGTTGCTGCGTGGGCGCCAAAACCCGCGCGGCTCGCGGACGTGGATGCGGAGGTCGACTGGTTCCGGGGCACCATGGCAAACATTTGTGATGCCGCCATGCCCCGGGTCGGCCCCCGAGCACCACGTGGGGGTGCGTTCTGGTGGTCGCCCGAGATCGCAAGACTCCGCGAGGAGTGCGTGAGGGCGCGCCGCCGGAGCGCACGTCACCGCCGCCGCCGTCGTCGCGACGCTACGTTCGCGGAGACGGCGGCCCGGCTGCACGCTGACTGTCGTCAAAAGCAGACGGCGCTGCAGCTGGCCATCGGCGAGGCCAAGAAGCAGAGCATGAAGACTCTCCTGGAGTCGCTCGACGAAGATCCCTGGGGGCGCCCATACAAGATGGTTCGCAGGAAACTGCAGCCGTGGGCGCTCCCGGTGACCGAGCGGCTCCAGCCTCGGCAGCTGCGGGAAATAGTTTCTGCGCTTTTCCCGCCGGCAGCGGGGGGGGACTTTGAGCCCCCCCAGATGGACGCCACGTGGGGCACGCCTCCGCGTCGCCCCAGCGTTCCCGCTGCTGAGGAGCCCCCTCCCCCTATCACGGGGGCGGAGATCCATGCGGCCGTGTCCAAAATGAGAGCGAAGGACACGGCCCCCGGCCCTGACGGCGTTCACGGCCGGGTCTGGAGCTTGGCCTTCGAGGCCCTAGGGGACCGGCTCGGGGGGCTTTTCGAAGCGTGCCTCGAGTCGGGACGGTTCCCGTCGAAATGGAAGACGGGCAGACTGGTCCTTCTGCGGAAGGACGGGCGCCCCGCGGACTCACCCGCGGGCTATCGCCCCATCGTGTTGCTGGACGAAGCGGGCAAGATGCTCGAGAGGATCGTCGCGGCCCGCATCGTCCGGCACCTGACCGAGACGGGTCCCGATCTTTCGGCGGAGCAATACGGCTTCAGAGAGGGCCGCTCGACTATCGACGCAATTCTGCGCGTGCGGGCCCTCTCCGATGAAGCCGTATCCCGGGGCGGGGTGGCGATGGCGTTATCCTTAGATGTAAGGAACGCCTTCAACACCCTGCCCTGGTCGGTGATCGCGGGGGCGCTGGAGTATCACGGCGTCCCCGCATACCTCCGCCGACTGATCGGCTCCTATCTCGAGGGCAGGTCGATCCAGTGCATCGGACACGGTGGGGCGATGTACCGCTTCCCCGTCGAGCGCGGTGTTCCGCAGGGGTCCGTCCTGGAACCCCTGCTGTGGAACATCGGCTACGACTGGGTCCTGCGGGGCGTCATTCGGGGACCCCTCCCCGGGCTGAGCGTAATCTGTTACGCCGACGACACGTTGGTCGTGGCTCCGGGGAGGGACTACCGGGAGTCTGCCCGTCTGGCGTGCGCAGGCGTGGCACACGTCGTCACTAGAATCCGACGGTTGGGGCTCGAGGTGGCGCTCGACAAAACCCAGGCCCTGATGTTTCACGGGCCGGGACGAGCGCCGCCTGTGGGTGCCCACCTCGTGATCGGAGGCGTCCGCGTCGGGGTCGGGGTGACCGGTCTTCGGTATCTCGGCCTCGAACTGGACGGTCGGTGGAACTTCCGCGCTCACTTTGAGAAGTTGGGCCCTCGGCTGATGGCAACGGCCGGCTCTTTGAGCCGGCTCCTTCCAAACGTCGGGGGTCCCGATCAGGTGGCGCGCCGCCTCTACATGGGGGTGGTGCGGTCGATGGCACTATACGGCGCGCCCGTATGGTGCCACGCCCTGACCCGCCAGAACGTCGCCGCGCTGCGACGTCCGCAGCGCGCGATCGCGGTCAGGGCGATCCGAGGATACCGCACCGTCTCCTTCGAGGCGGCGTGCTTGCTCGCCGGGGCGCCACCCTGGGACCTGGAGGCGGAGGCGCTCGCTGCCGATTACCGGTGGCGTAGCGACCTCCGCTCTAGGGGGGAAGGGCGCCCCGGCGAAGGAGTAGTTCGAGCGCGGAGGCTCCAATCTCGGCGGTCCGTGCTGGAGGCGTGGTCTCGCCGCTTGGCGGACCCGTCGGCCGGCCTCCGAACCGTCGAGGCGGTCCGCCCGGTTCTCGCGGACTGGGTGGGCCGCGACCGCGGATGCCTCACCTTCCGGCTAACGCAGATGCTTACCGGCCATGGTTGTTTCGGCCGGTACTTGCACAAGATAGCCGGAAGGGAACCGACGGCGCAGTGCCACCACTGCGCAGACCGCGACGAGGATGACACAGCGGAACACACGCTGGCGCGTTGCTCTGGATTTGACGAGCAGCGCGCCGCCCTCGTCGCGGTCATTGGAGAGGACCTCTCGCTGCCGCGCGTCGTGGCTACGATGCTCGGCAGCGACGCGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTCCACCATATCGCAGAAGGAGGCGGCGGAGCGAGAGAGGGAGAGCTCTTCCCTTTCCGCACCGATCCGTCGCCGTCGAGCCGGGGGCCGGAGGCGGGAATACGCCCGGGAGTCGTTTAGTGGGTGGGCTCTAAAATCCTTGGGCCCGCGGTCTGCTCACAACACCATGCAGATCGTTGAGTCTCACATACCCCGCGCGCCCCATTTGCGCGGGGACCTCGTAGGAGGTTCGGCCCTCTACCCGAAAAAAAAAAAAAAAAAAAAGGGTCACACATGTGTTGCCGGGGCGCCACCCTGGGACCTGGAGGCGGAGGCGCTCGCTGCCGATTACCGGTGGCGTAGCGACCTCCGCTCTAGGGGGGAAGGGCGCCCCAGCGAAGGAGTAGTTCGAGCGCGGAGGCTCCAATCTCGGCGGTCCGTGCTGGAGGCGTGGTCTCGCCGCTTGGCGGACCCGTCGGCCGGCCTCCGTACCGTCGAGGCGGTCCGTCCGGTCCTCGCGGACTGGGTGGGCCGCGACCGCGGAGGCCTCAGCTTCCGGCTGACGCAGATGTTGACCGGCCATGGGTGTTTTGGCCGGTACCTCTTTAAGATAGCCGGAAGGGAACCGACGGCGCAGTGCCACCACTGCGCGGACCGCGACGAGGAAGACACAGCGGAACACACGCTGGCGCGTTGCTCTGGATTCGACGAGCAACGCGCCGCCCTCGTCGCGGTCATTGGAGAGGACCTCTCGCTGCCGCGCGTCGTGGCTACGATGCTCGGCAGCGACGCGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTCCACCATCTCGCAGAAGGAGGCGGCGGAGCGAGAGAGGGAGAGCTCTTCCCTTTCTGCACCGATCCGTCGCCGTCGAGCCGGGGGCCGGAGGCGGGAATACGCCCGTACGTCCCGGCCCCTGTAG
Protein
MGSLLHVRINNSIKTVDAIGMVGSNKGHGCKVGWIIKTTRLGEKKNIFHPRVTHVFPRDLGGPPGAHSAWPGAPSVGEFCWTSTGRVRRWRITGSSGNSPTPRGIVRSFSLQGFLGVRRVPPAPRGRIPPCGRAIGRTLPHRFWGGKHCHDEGGDSTGRVRDRVPTVRLERCESLISLYSARSSARGDASSGRETPALFVDSARQRTRRKRKSARQPASVPPSDSSEGEPASAKYMALAEGPAAAAAPPVTDFEKPSSCGLDAASSAQFRAACREAKNKNKNRKQEEVERLQRSLTEVGPSDPLRACKIVGKIVATIAAKSNGGLKGSEVSAMKSAAATLEERLQDVVDRTTTAETAGLRQEVALQHVRLEQLAEENGQLRAENGQLRVDMAELRTMVADLIERQRSSAPVPPSPEAEGLNEVEELRRQLLIQEARSSTVERARPPLAHEVKNGAPTPAPRRTVAARTYSGPKKGATPAARPAASGTQKDTGAPKPAPAGAQVTGQRETQKTAPAPSQPPKAGPGRSRTKKKGRTNAAKPAPTPQPRPLPPAPVNMNEAWTTVVRRGPKKVAAPPAPRPKPAPAAAAPRQEGRAEPRGRTGRRRPRAPRSAAVVVELLPAGKEKGITYHEVMTQARGGVNVDALGVEGGIKVRQTANGARLIECPGPNTNAAAEKLAARLREILPDPEVVRIARPVKMGEVKITGLDECATKEEVAAAIASQGNCALADVKVGELRVTYSGTRTAWARCPIATATLLATPPQGRPSDSPGRLRVGWVVAHVQLQESRPWRCLRCFGTGHGLAKCPSTVDRSDLCFRCGQPGHKAASCTTAAPHCVLCDAAKRKADHRAGGPACKSAPSSTKTRRGGKKNKKNKERPAATRAAGESVPVAAIVEPQGGTDEGAMDDLLVHTMAEWSIDVAVAAEPYFVPTDQDCWMGDVDGSVAIVLRQSAALPPLEMVARGPGYVAARIDGTVVIGAYFSPNRSLAEFERFLGGLEALLHRLGSRPVIVAGDLNAKCTAWGSPRTDSRGEALSEWAIATGLCLLNRGTVATCVRWNGQSHVDVTFASPSTVRRTRGWRVLEGAETLSDHRYVRFELSASSASSTSSTLSSASAAGARGEEELPQGAPRSFPRWALKRMNKELLMEAAAVAAWAPKPARLADVDAEVDWFRGTMANICDAAMPRVGPRAPRGGAFWWSPEIARLREECVRARRRSARHRRRRRRDATFAETAARLHADCRQKQTALQLAIGEAKKQSMKTLLESLDEDPWGRPYKMVRRKLQPWALPVTERLQPRQLREIVSALFPPAAGGDFEPPQMDATWGTPPRRPSVPAAEEPPPPITGAEIHAAVSKMRAKDTAPGPDGVHGRVWSLAFEALGDRLGGLFEACLESGRFPSKWKTGRLVLLRKDGRPADSPAGYRPIVLLDEAGKMLERIVAARIVRHLTETGPDLSAEQYGFREGRSTIDAILRVRALSDEAVSRGGVAMALSLDVRNAFNTLPWSVIAGALEYHGVPAYLRRLIGSYLEGRSIQCIGHGGAMYRFPVERGVPQGSVLEPLLWNIGYDWVLRGVIRGPLPGLSVICYADDTLVVAPGRDYRESARLACAGVAHVVTRIRRLGLEVALDKTQALMFHGPGRAPPVGAHLVIGGVRVGVGVTGLRYLGLELDGRWNFRAHFEKLGPRLMATAGSLSRLLPNVGGPDQVARRLYMGVVRSMALYGAPVWCHALTRQNVAALRRPQRAIAVRAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYRWRSDLRSRGEGRPGEGVVRARRLQSRRSVLEAWSRRLADPSAGLRTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLHKIAGREPTAQCHHCADRDEDDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDFCESTISQKEAAERERESSSLSAPIRRRRAGGRRREYARESFSGWALKSLGPRSAHNTMQIVESHIPRAPHLRGDLVGGSALYPKKKKKKKGHTCVAGAPPWDLEAEALAADYRWRSDLRSRGEGRPSEGVVRARRLQSRRSVLEAWSRRLADPSAGLRTVEAVRPVLADWVGRDRGGLSFRLTQMLTGHGCFGRYLFKIAGREPTAQCHHCADRDEEDTAEHTLARCSGFDEQRAALVAVIGEDLSLPRVVATMLGSDASWKAMLDFCESTISQKEAAERERESSSLSAPIRRRRAGGRRREYARTSRPL

Summary

Uniprot
ProteinModelPortal
PDB
1WDU     E-value=1.3249e-09,     Score=158

Ontologies

Topology

Length:
2241
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0709500000000001
Exp number, first 60 AAs:
0.00029
Total prob of N-in:
0.00002
outside
1  -  2241
 
 

Population Genetic Test Statistics

Pi
32.796423
Theta
13.807676
Tajima's D
0
CLR
11.374621
CSRT
0.376831158442078
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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