Silkworm Genome Informatics Database

Gene

KWMTBOMO10252

Pre Gene Modal

BGIBMGA007277

Annotation

PREDICTED:_inactive_rhomboid_protein_1?_partial_[Bombyx_mori]

Location

Bomo_Chr17(+):5982708-6021795 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 2.754

CDS

ATGAGGTATGCTAGTTGGAATGTAGGGACGATGACTGGAAGAGCAAGAGAAATAGCGGATGTATGTAAGAAACGAAGGATAAATGTGGCGTGTTTGCAAGAGACGAAATGGAAAGGAACACGAGCTAGAGAGATTAGTGAAGGATGTAAACTCTTATATAGTGGGAGTGGTGGAAGAAAGAATGGAGTTGGAATTGTGCCAGATAGTGAGTTGAAAAAATATGTGACGGGTGTAAGACGAGTGAATGATAGGCTGATGCTAGTGAAATTAATAAAAGATGATTTCATTATTAATGTTGTTAGTGCATATGCCCCACAATCTGGATGTGATAGAAGTATGAAAAAGAAGTTTTGGGTTGAATTTGACTTGCTGATGATGGATATTCCTGACTCAGAAGAGATATATGTGGGTGCAGACTTCGATGAGCATGTAGGACAAAGGAATGATAGATATGAAAGAGTGCATGGAGGATATGGGTTTGGTACTAGAAATGAGGAAGGTGAAATGTTGTTGGAAGCTGCTTTGGTGTTTGATCTAGCAATAGCTAACACATTTTTCACTAAACGCAAGGAACATCTTATAACATACAAAAGTGGAAACTGCAACACCCAGCACAGGCGATCGAGTACAGGGTTGCTGGCTCCGCAGTTAACGTGTCAATCGTCAGCGGCGGCGACTGCAGCGGCTACAGCACCCCACCCAGCGCCAGCCTCGCCACCGCGCGTGGTCTCCGCGCCCCCCGTACCTATCGTTCAACCTCCACCCGAACCATTACCACCGCCCACTCAAGACGATGGCGTCAGATTGCGAAGAGTTCACACTGTCGCTGTACGGGATTACCTTAAGAGAGAAACGCAAACGTTTTTTGGCGTACAAAGAGATAATGAGAGGGAGCAAAGAAGGCTGTGGTTTGAAAGGCGGAGGAGGCACGCGGCGCGGGCGCTGGGTGACCTCCGGCTTGACCTACCACCGGACCATCATCCTGATGACGATGATATTAGTATGTATGGAGCGTCAGGCGCGGCACCAAGGGAGGCACGGGGGCGCGTGCAGGAGCGGCCCGACGTCTTACCCGCGCCGGCGCCGCTCGAGGAGCCAGCGACACCCCCCCTGCCCTGCCCCGGCAAGGACAGTGTCGCGAGACTCACGCTCACAGGACTGTCCCTTGTTGTTAGTGCGGTGACACGTCGATCCCGGCAGTCGACCTCAGCTCAATGGTCGCGTTCGTTTCGTAACAGCGGGGCCGCCCAGCAAGAAGAAACCGAAGTTGAAGATACGTTCTTCACGCCGCAGTCTTCGGTGACACCTCTCACTCAGCACATTGACGACGTTGAGTCAATTGAAGGAAACAAAAGGGCGCGTTCTCCGGTAACTTCTGGCGGAGTTGAGTACCGAAGGCCGGAGAGAAGTGTGTCGTGGGGCGCTGGCGGAGCACGAATACACACGCCGATACTAGAACCCTTGGCCGACAACTCGAACAGAAGACAATACGGTATGGGCGTCGTTGGAAGATTTTTCCGACGATCCCTTCGCAAATCAATGACGCATCATGAAGAAGTGGCTCGACAACTAGACGAATTAACCGACTACCGGCCTTACTTCACGTGGTGGGTGAGCACAGTGCAGACCCTGGTCTTGTTGCTGTCATTGCTGTGTTATGGTTTCGGGCCAGTCGGCTTCGGAAGGCACACGCACTCTGGACAGGTGCTGGTCAAGAGTTTGAGTTTACAGCAGGTTGAATGGGAAGAGCCAGCTTCGTTCTGGTTGGGGCCAAGGGCAGCGGACTTGATACACTTGGGGGCGAAGTTTGCTCCGTGCATGAGGCGAGATGCAAGGATAGCAAGGGCCATAGCAGCATCGGCGAGAAGAGAACGGGACACTGCGTGTTGCATACGTAACGATGATTCAGGCTGTGTCCAATCATCAAAGGCTGACTGTTCGAATACAATATCTACATGGAAAAAATGGTCTTCGGGAGAATCGGGACCCGGGGGACGGATATCAGGGTCCGTTTGTGGTTTAGATCCAAAATTTTGCGAGGCCCCTCGGTCGATAGCACCTCACGAATGGCCAGATGACATCACGAAATGGCCGATTTGTCGCAAGTCGGTGCTGGACGGATCGGCGGCAGCTGGACGGGCCGGACACGCGGCGGAGCACATGGCTTGCGAGGTCATAGGTCATCCGTGTTGTATAGGAGTGCACGGACAATGCGTGATCACGACTAGGGAGCATTGCGACTTTGTCAAGGGATATTTTCACGAAGAGGCCTCACTTTGCTCGCAGGTATCGTGCCTCGACGATGTTTGTGGAATGTTACCGTTCATGAGAAGGAGACGTCCAGATCAACTGTATAGAGCGTGGACGTCTTTATTCGTACATGCTGGTCTCTTACATTTGGCTGCGACGCTGGCGTTGCAGTGGCTCTTCATGAGGGACATGGAGAAAATGGCTGGCCCTGTTCGGATGGCTGTGATATATTTGGGCAGTGGCGTTGCTGGGAACATGGCCTCAGCGATATTTGAACCGTATAGAGCAGAGGTGGGGCCTGCTGGGTCCCATTTCGGGCTGTTGGCATGTTTAATAGTAGAAGTTATCGGAGCTTGGCCAATACTCAAACATCCCAGGCGGGCTCTGCTCAAATTAATGGGACTCGCGTTTGCGTTGTTTCTATTAGGACTTCTGCCATGGATAGACAATTTCGCTCACGTTTTCGGTTTCGTGTTCGGATTCCTGCTAGCGTACGCCTTATTACCGTTCATAATATTCGGTCCGTACGAGCGGAGAAGGAAAATAGTGTTGGTGTGGGTGTGTCTTATATCGGCGGCGGCTATGCTGTGCGCTTTGGTGGCTTTGTTCTACGCGGCGCCGGCGTACGAGTGCGCGGCGTGCGCTTACTTCACGTGTCTCCCGTTCGCGCCGGACATGTGCGCGTCGCAGGATGTGCGCGTGCGTCAGATGGACGGGAGAGTACAAGTACTGTATGTAGTTCGGAAACAAATTTTAAAGTACTACTACTACATTGATAAATTCAATTATCGTGAGGCATGA

Protein

MRYASWNVGTMTGRAREIADVCKKRRINVACLQETKWKGTRAREISEGCKLLYSGSGGRKNGVGIVPDSELKKYVTGVRRVNDRLMLVKLIKDDFIINVVSAYAPQSGCDRSMKKKFWVEFDLLMMDIPDSEEIYVGADFDEHVGQRNDRYERVHGGYGFGTRNEEGEMLLEAALVFDLAIANTFFTKRKEHLITYKSGNCNTQHRRSSTGLLAPQLTCQSSAAATAAATAPHPAPASPPRVVSAPPVPIVQPPPEPLPPPTQDDGVRLRRVHTVAVRDYLKRETQTFFGVQRDNEREQRRLWFERRRRHAARALGDLRLDLPPDHHPDDDDISMYGASGAAPREARGRVQERPDVLPAPAPLEEPATPPLPCPGKDSVARLTLTGLSLVVSAVTRRSRQSTSAQWSRSFRNSGAAQQEETEVEDTFFTPQSSVTPLTQHIDDVESIEGNKRARSPVTSGGVEYRRPERSVSWGAGGARIHTPILEPLADNSNRRQYGMGVVGRFFRRSLRKSMTHHEEVARQLDELTDYRPYFTWWVSTVQTLVLLLSLLCYGFGPVGFGRHTHSGQVLVKSLSLQQVEWEEPASFWLGPRAADLIHLGAKFAPCMRRDARIARAIAASARRERDTACCIRNDDSGCVQSSKADCSNTISTWKKWSSGESGPGGRISGSVCGLDPKFCEAPRSIAPHEWPDDITKWPICRKSVLDGSAAAGRAGHAAEHMACEVIGHPCCIGVHGQCVITTREHCDFVKGYFHEEASLCSQVSCLDDVCGMLPFMRRRRPDQLYRAWTSLFVHAGLLHLAATLALQWLFMRDMEKMAGPVRMAVIYLGSGVAGNMASAIFEPYRAEVGPAGSHFGLLACLIVEVIGAWPILKHPRRALLKLMGLAFALFLLGLLPWIDNFAHVFGFVFGFLLAYALLPFIIFGPYERRRKIVLVWVCLISAAAMLCALVALFYAAPAYECAACAYFTCLPFAPDMCASQDVRVRQMDGRVQVLYVVRKQILKYYYYIDKFNYREA

Uniprot

A0A212FBV7 A0A194QB19 A0A194QSA5 D6WXI7 A0A139WDD3 A0A1Y1M4H1 + More
A0A2J7RGG3 A0A1B6I1U1 A0A1B6BZ94 A0A1B6D551 A0A3L8DJM5 A0A2S2R737 A0A2S2QMB9 A0A2H8TKD3 A0A3R7QVY3

Pubmed

22118469 26354079 18362917 19820115 28004739 30249741 + More

EMBL

AGBW02009266 OWR51220.1 KQ459232 KPJ02738.1 KQ461155 KPJ08199.1 + More
KQ971361 EFA08850.2 KYB25953.1 GEZM01041448 GEZM01041447 GEZM01041443 JAV80401.1 NEVH01003784 PNF39917.1 GECU01026804 JAS80902.1 GEDC01031003 JAS06295.1 GEDC01016469 JAS20829.1 QOIP01000007 RLU20139.1 GGMS01016612 MBY85815.1 GGMS01009716 MBY78919.1 GFXV01002694 MBW14499.1 QCYY01001137 ROT80258.1

Proteomes

UP000007151 UP000053268 UP000053240 UP000007266 UP000235965 UP000279307 + More
UP000283509

Pfam

PF01694 Rhomboid + More
PF00010 HLH

Interpro

IPR035952   Rhomboid-like_sf        + More
IPR022764   Peptidase_S54_rhomboid_dom
IPR020846   MFS_dom
IPR036638   HLH_DNA-bd_sf
IPR011598   bHLH_dom

SUPFAM

SSF47459 SSF47459

Gene 3D

1.20.1540.10 4.10.280.10

CDD

cd06174 MFS
cd00083 HLH

ProteinModelPortal

A0A212FBV7 A0A194QB19 A0A194QSA5 D6WXI7 A0A139WDD3 A0A1Y1M4H1 + More
A0A2J7RGG3 A0A1B6I1U1 A0A1B6BZ94 A0A1B6D551 A0A3L8DJM5 A0A2S2R737 A0A2S2QMB9 A0A2H8TKD3 A0A3R7QVY3

PDB

2VOA E-value=0.00917678, Score=96

KEGG

101738568 no KO assigned | (RefSeq) inactive rhomboid protein 1

GO

GO:0016021 GO:0004252 GO:0005789 GO:0042058 GO:0050708 GO:0006412 GO:0005622 GO:0015935 GO:0004812 GO:0006418 GO:0003723 GO:0046872 GO:0003824

Length:

1016

Number of predicted TMHs:

6

Exp number of AAs in TMHs:

132.31506

Exp number, first 60 AAs:

0

Total prob of N-in:

0.01925

outside

1 - 783

TMhelix

784 - 806

inside

807 - 817

TMhelix

818 - 840

outside

841 - 849

TMhelix

850 - 872

inside

873 - 878

TMhelix

879 - 898

outside

899 - 902

TMhelix

903 - 925

inside

926 - 931

TMhelix

932 - 954

outside

955 - 1016

Pi

234.382244

Theta

161.638915

Tajima's D

1.095783

CLR

0.224577

CSRT

0.691015449227539

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics