SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10239  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA012645
Annotation
unknown_[Picea_sitchensis]
Location in the cell
Extracellular   Reliability : 2.192 PlasmaMembrane   Reliability : 2.499
 

Sequence

CDS
ATGGAAACTGTGGTGTTCTTTTTGATAATCACTTCGTTTTTCTGCGCGATTAATTGTCGCATATCGCGGAGCAGTGAAGCGCAATGCCTTAGTTATTACAACAACGAAGAGAACTTTGATTTGGATACGTTATCGGGACAAATGTACGCGGTCTATTACTGGCCCCCGAATCAGAGAACGAGGAACGCCTGCGAAGTACAAACCTTCAAGAAACTCGATACATACGAAATAGAAACCGCTAGGAACGGCTGCTCGAACCTCAGCCTCCCTTCAGAGGAGCCGGTCATCAGGGCCACGTACAAGAACAGCACCGGCAAAATCGTGAACGTCTTGTACTATGGGAGCGATTCGGTGAAGAACTTCTACAGGTCCTGCGACAAGGACGTCGCTAAGTACATATTCACCAGGGTCAACGAGGATTACATTCTGGGCATCAATTGCTCGTCGGAGGGGCGCAGCGTGCTGTTGTCCAAGCTCTTAGGCTCGCTGTCGACTGTCAAAAGGATCGTGGACGGTATAGATATTATGACCGGAAGAGAGGGAAGCCCGGATTGTGTGCTCGAACATTAA
Protein
METVVFFLIITSFFCAINCRISRSSEAQCLSYYNNEENFDLDTLSGQMYAVYYWPPNQRTRNACEVQTFKKLDTYEIETARNGCSNLSLPSEEPVIRATYKNSTGKIVNVLYYGSDSVKNFYRSCDKDVAKYIFTRVNEDYILGINCSSEGRSVLLSKLLGSLSTVKRIVDGIDIMTGREGSPDCVLEH

Summary

Pfam
PF03392   OS-D        + More
PF00071   Ras
Interpro
IPR036682   OS_D_A10/PebIII_sf        + More
IPR005055   A10/PebIII       
IPR001806   Small_GTPase       
IPR020849   Small_GTPase_Ras-type       
IPR027417   P-loop_NTPase       
IPR005225   Small_GTP-bd_dom       
SUPFAM
SSF100910   SSF100910        + More
SSF52540   SSF52540       
Gene 3D

Ontologies

Topology

SignalP
Position:   1 - 19,         Likelihood:  0.971803
 
 
Length:
189
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
4.08058999999998
Exp number, first 60 AAs:
4.0795
Total prob of N-in:
0.03042
outside
1  -  189
 
 

Population Genetic Test Statistics

Pi
57.507655
Theta
67.525639
Tajima's D
-0.463416
CLR
51.44007
CSRT
0.251187440627969
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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