SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10235
Pre Gene Modal
BGIBMGA000181
Annotation
PREDICTED:_Down_syndrome_cell_adhesion_molecule-like_protein_Dscam2_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 1.138 PlasmaMembrane   Reliability : 1.213
 

Sequence

CDS
ATGCCACGACTCTGTCCACGTACCGCCATTTTATACTGATATCTCCATCTGGTTATCGTATCACTGGTGGTGGCAGACGCGAGCTCAAGTGACAAACGACCTGGCTTCGTGGTGGAGCCACCGTCGCGGCTATTGTGGCCGTCGACTCGGGGCGCACACGCGGAATGCCGAGCAACTGGTCATCCAACTCCCGACGTCTACTGGGTCACTGCTGAGGGGCAGGTGCTAACTACTATCCCTGGACTGAGACACGTCTTGCCAGACGGTAAGCTAGTGCTGGGTGCTCGAAGATCGCTTCTGGAAGCTGGTAGTGGAGCAAGCGGTGCTGTTCTCCGATGCAAGGCGACCAACAAAGCTGGGACCGTTCTCTCTCGACCAGTAATACTACAACCAGTGGAAGATGGCGTGTTAACTCATACTGCTCGGCAACTGACACCCGCCAAAGTTGGCGGTTCGGTTCTTATGAGATGTGAAGTATCACCGCAGGTCGGTCTCGTGGAGGTCACGTGGCTTCAAGACGGACTTTCTCTGTCCTCAGGGTATTTAACCAGCGATTCGCGATGGACAGCCGGAGCCGGTGGACTCTTACTCGGCACAGATTTGACTCAAGCTGATATACAAGCAGAATACTCCTGTCTGGCCGTAGATACGTTAAGTCCGGCGTTAAAACTCACTACTGATGATAGCTGCTGGCTCGAGAATATAGAACTAAGTTCCGTAGAGGCTCAGACTGGAGATACTGTGATTCTTCCTTGTATACTAAGGCATGTCAGTGGTGATTCTCTTACTTGGCAGCGACAGGACTCGAGTGGGACTTGGTCATCATCAAATGATGGTTCAGCACGTGGAGGAGCTCTTATATTCCCAGCAGTGAGACCGGACCATGCAGCAAAATATTCTTGTTCTTACGGCTCAGGATCTTCGCAAAGACTGCTCATTCGATTAATAGTTTACGAACCTTTAATTTTGACTGTCGCCCCAAATCCGTTGACATTAGGGACTGGTGGTACAGGGCAATTTAACTGTTCGGTTCGCGGTGGACGTGGTAATGGGATTACCTTGAGCTGGCAACATGAAGGGCGCCCCCTTCACGCTCCACAAGCACGCCTGTCCGTCGGACCAGTACGTTCTCATCACGCTGGTACATATCAATGCACCGCTCACGACCACACTGACACGGCTGTTGCTGGCGCTGAACTTGTCCTCGCTGACAGACCACCGAGACTGGTATCGACGTTTAGTGAAGCTGTTACGAGGATAGGACAGAGTATAGCTTTGAAATGTGCAGCTACTGGCTTACCATCCCCTCGCATACTTTGGACTTTAGACGATAGACCACTTCCATCAGCGCCAGACAAGTATAATGTAAATACTAGAGGAGAAACTGTGCCTGGTGCGGATGAAGGAACTGTAGTTTCCACACTTAGTATCACAATTAGAACTGCTGATGAAGGTGGACGATATGGATGTAACGCAACCAATTCTAGGGGATCGCACGTACATCATGCTAGATTAAATGTTTACGGGCCACCAAATATTAGGTATTTACACGCGATTCACGTTAAAACTGACAATGATGTGAAACTGCACTGCCCTTATTCAGGGTATCCAATCAAGGAGGTAGTTTGGCGTCGCGAGGATGGTTCGTTAGTAGACGTAGCAATGGAAGCTGGTGATGAACGAGGAATACTTAGATTACATTCTGTAAGGAGCGCCGCGTCAGGAAGCTACACTTGTGAAGTCCGAGCTGAAAGTGGAGAACTTGCAAGAAGAACTGTTCGCATTGAAGTTCACAAGCCGCCAAAGATAGCGGATTTTCATTTTCCGGAAGAATTAGAAGTTGGTGGTAGTACTCAAGCAACATGCAGTTTGATAACAGGAGATAAACCAATACAGTTCACGTGGCACAAAGATAATTTACCAATACCTTCTGCGCTTAAGACGGAGCAAAAAAACATGGATTTCTTTTCTATCCTAATCATACAAGACCTAACATCAGCTCACAGTGGCGAATACACCTGCAAAGCATCAAACGATTTTGGTAGCGTAAGTCACAGTGCGCCTCTAATTGTGAAAGAGTCACCAACCTGGGTATGGCGAGCACAAAACATTTCAGTGTCAGCTGGTGCGGTACTTCTGTTGCCATGTTCTGCTAAAGGACAACCGACTCCTAGGATATCCTGGGAATATTCTGCTGATGGTGATAATTGGCGACATGTCCTATGGAGTCAATCAGAGGCATCAGACATGGGAGGTGGCTCAGTACTTTCAGATGGAACAGTTTGGTTGAAAGAGGTCACTCCCGGACACGAGGGCTGGTACAGATGTACAGCAAGAGTTCAACATTCATTCTTGCACCATTCCTTTTATTTAGATGTTAGAGAGCCTCCACGATTGACAAGGGGCGGTGGAGGTGGAGAAACTCGATGGGTGGTGAGAGGGGCTACGGCTCGTTTGACTTGCACAGTTAGAGGAGAACCAGAAATTCACGTCCATTGGACGCACGATTCGAGACCTTTGGCTTTGCATGGATCGGGGGGGATAGAAACCAGAGACACGAACAGCGGTATAATTACTTCGGAAATGACTATAAACCACGCAGGACCGGAGCATGCGGGCGAGTACCGGTGCTTAGCAAGGAACTTGTATGGGGCCGACGAACTTGTCTTCAGACTATTCGTGAAAGAACGCCCGAGTATACCAGAGGAAGTACGCATATCTGACGTTTGGCCACGTAAAGCCCGTATCACGTGGAGGATGGCGAGAGGCGCTATGGTATCACATTATTCGATACAATACAGAGCATTAAACCGAGAGCTAACGACTGCACCGCTTGACGCTCCGCTACCCGCTCTGCTCGACACCTGGGACACTCCCGAAGTACTCAATCTGACATTAGGAAACTCAGATTTGCTACATGTGGCGTCTGAAGGTCCGAGCCGAGCCGGTGCTTTTGTGTCAGGCTTGTCACCTGACACTCGATACGCATTACGGGTAGCCGCTTACAACGACGTTGGAGCATCGTCTTATACAGCACCTCTACACTTCACTACCCGGGAGGAAGCACCCGGAGGAGCTCCCCGCGATATCACTGTACGAGCACTAAGAGCTCGTGAACTTCACGTCACATGGCAGTCTCCACTTCGAGAAACATGGCATGGAACTTTACTAGGATATACCATACGTTGGTGGGAGGTATCGGAGGTAAACAAAGGCGTTCTCACCGAGGGTCCTGGTTCTGAAAGTGGAGCAAGCGCAGATGCCACTAGTACGACTCTTAGAGGTTTGAAAGCTGCAACAAGGTACGGTGTTACCGTAAAAGCTTACAATGCAGCGGGCACTGGTCCACCTTCACCGCCTCATTACCGATACACATTGGAATCAGCACCTACTGGAGGTCCTGAAGGTGTGGAATGTAAATCAAGTGGTGCAACATCCCTCCGTGTTTCTTGGAGTCCGCCAGCCTTGGATTCTCGTGGCGGTCTGATCACCCATTACACTGTACAATACACGAGGAGAGATACTGATCCTATGCTGCTTACCCAAGATGCTTATCTTCGTGTGCAGGGCGAAGAAGCGACCATATCTCGATTAACGCCATACGCTGAATACGAAATAAGAATTAGAGCTCACACTGCAGCCGGCGATGGACCACTCTCAACACCTCAAGTCTGCAGAACTGATGAAGATGTTCCAAGTGCACCAGGAGGAATAAAGCTGATCGCTTTGGGCGAACGTTCCCTAAGAGCGTCTTGGCTTCCACCACCAGAACCAAATGGAAAACTAACCCATTACACTTTATTTGTTAAAGACTTATCAGGATCTCACGAACCAAATTTGACAAAAGTGAATGCGTGTGCGGAAAGCGAAGGCAGTTCCGGAGAATGTATGAAATCTTTGCGTGGATTAAGACCGAGTAGAACCTACGAAGCTTGGGTACGAGCAGCTACAGTTGCCGGAGACGGACCTCCTTCGGCTGCTGTGGCTTGTCAAACTAACGCTTTAGCGCCGGCTCGTATTTCTTCATTCGGTGGTATAGCTATAGGAACCGCGGGTGGTTCTTTGTCTTTAAGATGTGTTGTGGGTGGTGCTCCACCACCGGCTAAGCGGTGGCTCAGAGGTGGTAGTCCCACCCATCCCAGACCACCGTTTCATCTCGATGGCGATGCTTTATTGATAAGAGGTCTAGAGCTATCACATGCCGACAATTACACGTGCGTTGCTGAGAACCCTCACGGCTCTGATTCAGTAACTTGGAAGGTTATTGTGTTACGTCCACCTGCACCTCCTGGGCTCATGTTATTAGAGGCCAGATCGAGAGAATTAGAACTAGACTTAAGGCCGGCACAGAGAGCACAAGGGCATGCAGTAGCAAAGGTTTTTACTATACATTGGAGACTAGCGTCGCTCGAGGGTGAGTGGCGAACTCAATCCGCCACTCCAGGTCCGATAATACTGACCGGACTACGTTGTGGATCAGCATATAGAGTGTACGGATCAGCCGGTGGTGCTCCTGGCTCTGAGCTCACTGTTCGTACATCTGGAGGTCCGCCTATAGCTCCTCCGGACGCTAGATGGATCAGAGCTAATGCAACTCACGCTAGGTTCGATACTAGTATTTGGGGAGATGGGGGGTGTGGACCAGTTGCTCTTAAGTTAGAGTGGGCAGGATCTGGCTTAGCCGGAGCTAGAGATGTCCCTGTGGGAGGTGAAGTTATTTTAGGTGGTTTATCCCCCGGTGCAAGATATCGTCTTGCAGCCAGAGCTTCTAACGAGGCGGGTTGGACCCGTGAAGTTTATGAATTTACAACAACACTCTCAGAAGGAGGATTTGCCGAGGAAGTCGATGCTCCATTCCCAGCTACCGCGGGAGAATTAGCACTGCTTCTGGCACTATGCGCCGCCCTGTCTTTGGCTGCCTTAACTATATTAGCTATATTATTAAGGAGAAAAAGGTCGGATGGCGCGGCCGCGAGGGTATCCACAAGCGCTGAGAAGCCGAACTGCGGTACATACAAAGGGACACCACATCAAGCGCCAAAGCTACCCCCCGATCCACCAGATGTGTACGAAATAAGCCCTTATGCAACGTTTGCTGGAGGACCGGGTTCAACGGCGGGTGCGTCTCGCGCGTACACTTTGCAGCTGCGGGCGCTCGCTAGGCACGACGATGACGCGGCGCCACCACACCCTCCATGCTGCGACGAGGAAACCTGCGTGGACGCATGTGACGGCCAACGTAGACGCAGACGACGCAGGCACTACTGCCCTGATCACGGTTGTTCTCAAGATTCTGGAAGTTGA
Protein
MPRLCPRTAILYXYLHLVIVSLVVADASSSDKRPGFVVEPPSRLLWPSTRGAHAECRATGHPTPDVYWVTAEGQVLTTIPGLRHVLPDGKLVLGARRSLLEAGSGASGAVLRCKATNKAGTVLSRPVILQPVEDGVLTHTARQLTPAKVGGSVLMRCEVSPQVGLVEVTWLQDGLSLSSGYLTSDSRWTAGAGGLLLGTDLTQADIQAEYSCLAVDTLSPALKLTTDDSCWLENIELSSVEAQTGDTVILPCILRHVSGDSLTWQRQDSSGTWSSSNDGSARGGALIFPAVRPDHAAKYSCSYGSGSSQRLLIRLIVYEPLILTVAPNPLTLGTGGTGQFNCSVRGGRGNGITLSWQHEGRPLHAPQARLSVGPVRSHHAGTYQCTAHDHTDTAVAGAELVLADRPPRLVSTFSEAVTRIGQSIALKCAATGLPSPRILWTLDDRPLPSAPDKYNVNTRGETVPGADEGTVVSTLSITIRTADEGGRYGCNATNSRGSHVHHARLNVYGPPNIRYLHAIHVKTDNDVKLHCPYSGYPIKEVVWRREDGSLVDVAMEAGDERGILRLHSVRSAASGSYTCEVRAESGELARRTVRIEVHKPPKIADFHFPEELEVGGSTQATCSLITGDKPIQFTWHKDNLPIPSALKTEQKNMDFFSILIIQDLTSAHSGEYTCKASNDFGSVSHSAPLIVKESPTWVWRAQNISVSAGAVLLLPCSAKGQPTPRISWEYSADGDNWRHVLWSQSEASDMGGGSVLSDGTVWLKEVTPGHEGWYRCTARVQHSFLHHSFYLDVREPPRLTRGGGGGETRWVVRGATARLTCTVRGEPEIHVHWTHDSRPLALHGSGGIETRDTNSGIITSEMTINHAGPEHAGEYRCLARNLYGADELVFRLFVKERPSIPEEVRISDVWPRKARITWRMARGAMVSHYSIQYRALNRELTTAPLDAPLPALLDTWDTPEVLNLTLGNSDLLHVASEGPSRAGAFVSGLSPDTRYALRVAAYNDVGASSYTAPLHFTTREEAPGGAPRDITVRALRARELHVTWQSPLRETWHGTLLGYTIRWWEVSEVNKGVLTEGPGSESGASADATSTTLRGLKAATRYGVTVKAYNAAGTGPPSPPHYRYTLESAPTGGPEGVECKSSGATSLRVSWSPPALDSRGGLITHYTVQYTRRDTDPMLLTQDAYLRVQGEEATISRLTPYAEYEIRIRAHTAAGDGPLSTPQVCRTDEDVPSAPGGIKLIALGERSLRASWLPPPEPNGKLTHYTLFVKDLSGSHEPNLTKVNACAESEGSSGECMKSLRGLRPSRTYEAWVRAATVAGDGPPSAAVACQTNALAPARISSFGGIAIGTAGGSLSLRCVVGGAPPPAKRWLRGGSPTHPRPPFHLDGDALLIRGLELSHADNYTCVAENPHGSDSVTWKVIVLRPPAPPGLMLLEARSRELELDLRPAQRAQGHAVAKVFTIHWRLASLEGEWRTQSATPGPIILTGLRCGSAYRVYGSAGGAPGSELTVRTSGGPPIAPPDARWIRANATHARFDTSIWGDGGCGPVALKLEWAGSGLAGARDVPVGGEVILGGLSPGARYRLAARASNEAGWTREVYEFTTTLSEGGFAEEVDAPFPATAGELALLLALCAALSLAALTILAILLRRKRSDGAAARVSTSAEKPNCGTYKGTPHQAPKLPPDPPDVYEISPYATFAGGPGSTAGASRAYTLQLRALARHDDDAAPPHPPCCDEETCVDACDGQRRRRRRRHYCPDHGCSQDSGS

Summary

EMBL
ODYU01003731    SOQ42878.1    KQ459232    KPJ02721.1    AGBW02008356    OWR53591.1    + More
NWSH01000075    PCG79896.1    GAMC01005845    JAC00711.1    CH902617    EDV43677.1    KPU80416.1    CH940650    KRF83565.1    EDW67931.1    KRF83564.1    CH964232    EDW80662.2    KQ435922    KOX68634.1    KQ976453    KYM85408.1    ADTU01017524    ADTU01017525    ADTU01017526    ADTU01017527    ADTU01017528    ADTU01017529    ADTU01017530    ADTU01017531    ADTU01017532    ADTU01017533    KQ981920    KYN32984.1    CM000070    KRT00043.1    KRT00047.1    KRT00044.1    KRT00045.1    KRT00046.1    KRT00048.1    KRT00049.1    EAL27462.3    CM000160    KRK02724.1    EDW95788.2    KRK02725.1    KQ978579    KYN30034.1    CH479179    EDW24064.1    KQ978255    KYM95887.1    CH933806    EDW15371.2    KRK02723.1    KRG01529.1    KRG01530.1    OUUW01000005    SPP80648.1    KQ971307    KYB29801.1    AE014297    AAS65164.2    KYB29803.1    KZ149956    PZC76468.1    KYB29804.1    AAF55426.3    ODYU01002306    SOQ39628.1    CH480827    EDW44727.1    ABW08696.1    CCAG010010693    CCAG010010694    CCAG010010695    CCAG010010696    CCAG010010697    CVRI01000006    CRK88017.1    UFQS01000550    UFQT01000550    SSX04800.1    SSX25163.1    JRES01001161    KNC24949.1    CP012526    ALC46292.1    KK107570    EZA48842.1    SSX04801.1    SSX25164.1    PZC76469.1    CH916374    EDV91529.1    ATLV01022806    ATLV01022807    ATLV01022808    ATLV01022809    ATLV01022810    ATLV01022811    KE525337    KFB47992.1    GEHC01000744    JAV46901.1    CH954181    EDV48714.1    KQ414632    KOC67128.1    AXCN02001019    AXCN02001020    AGBW02008880    OWR52305.1    GL888207    EGI65012.1    RSAL01000273    RVE43150.1    KRK02722.1    NNAY01000640    OXU27246.1    AAAB01008900    EAA09501.4    ODYU01001341    SOQ37392.1    GL887813    EGI69926.1    QOIP01000005    RLU23107.1    ADMH02000362    ETN66827.1    KQ460970    KPJ10147.1    BABH01027510    BABH01027511    BABH01027512    BABH01027513    AXCN02002350    AXCN02002351    ADTU01004694    ADTU01004695    ADTU01004696    ADTU01004697    ADTU01004698    ADTU01004699    ADTU01004700    ADTU01004701    ADTU01004702    ADTU01004703    AAAB01008948    EAA10381.5    EDO63981.1    JH431989    APCN01004601    EDO63980.1    ATLV01024156    KE525350    KFB50862.1    NEVH01022635    PNF18616.1    PNF18619.1   
Pfam
PF07679   I-set        + More
PF00041   fn3
PF13895   Ig_2
PF00047   ig
PF10523   BEN
PF02854   MIF4G
Interpro
IPR003598   Ig_sub2        + More
IPR036179   Ig-like_dom_sf       
IPR013098   Ig_I-set       
IPR036116   FN3_sf       
IPR003961   FN3_dom       
IPR007110   Ig-like_dom       
IPR003599   Ig_sub       
IPR013783   Ig-like_fold       
IPR013106   Ig_V-set       
IPR013151   Immunoglobulin       
IPR018379   BEN_domain       
IPR013087   Znf_C2H2_type       
IPR027413   GROEL-like_equatorial_sf       
IPR003006   Ig/MHC_CS       
IPR003890   MIF4G-like_typ-3       
IPR016021   MIF4-like_sf       
IPR016024   ARM-type_fold       
SUPFAM
SSF49265   SSF49265        + More
SSF48726   SSF48726       
SSF48592   SSF48592       
SSF48371   SSF48371       
Gene 3D
PDB
3DMK     E-value=1.24154e-50,     Score=511

Ontologies

Topology

SignalP
Position:   1 - 27,         Likelihood:  0.890625
 
 
Length:
1767
Number of predicted TMHs:
1
Exp number of AAs in TMHs:
30.85132
Exp number, first 60 AAs:
8.08205
Total prob of N-in:
0.41217
outside
1  -  1625
TMhelix
1626  -  1648
inside
1649  -  1767
 
 

Population Genetic Test Statistics

Pi
167.772374
Theta
170.929309
Tajima's D
0.335998
CLR
0.643318
CSRT
0.467676616169192
Interpretation
Possibly Positive selection
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