Silkworm Genome Informatics Database

Gene

KWMTBOMO10232 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA000173

Annotation

putative_VPS9-ankyrin_repeat-containing_protein_[Bombyx_mori]

Location

Bomo_Chr17(-):5340779-5343711 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.834

CDS

ATGGATGGCACTTACGACGAGATCGTCTCTGAGAATCCATTTTTTCTGGAATTAAAGAACGAATATGCTAATTTATTTCAACACTGCTTATCAGAATCTTGGATAATATGCGTGCCCCGTATCGGAAGTTTAACGAGTCGCGTATTTACTGTTGAAGATTTCTGCGCTCATTTGTTGGTACCCAGTGATGAACTGCCGGAAACTCACTTCAATACACTCACAGAAAAACAAGTGACTGTCTTGAACAAAGTTATCACAGTGGAAGTATCCAAGGGTCTGCCGTTACAAAGTCACATACTCTTCGAAGAAACATTTTATACTGAAGACTTCATGAAGTACAAGGTATGGTGCATTGAGTCTCCTCTAGAACCTACTAAAACAACAGACGACGCAGTAGTGTCGAAAGAATATTTATCAGGCATAAATGATTGTATTGACTTACTGTGGACACAAGCAGCAGGTCGGCAAGTACTTGATAATATTGAGCAAAATGTTGAAACTTTTTTGAAGAAACATTCTAATTTGCCTGTAGCTATAGGGCCCCTCAGAGATACTGTCAGCGAACTCTATACCCAATGTTTACAAGTGACGCTGCAAAACAGAAGACTCAGGGATAAATCAAAATCATGCAAACAAGTACTAGAAAATATAAAATTATCTGTAGAAAGTTATATGCAACATTTACTATTTGATTCTATTTTCAAATCCATCTGCACTTCGTGTGCTTATGAGGATGCTCATCTCAACAAAAAAATAAGAAACATGTGTGACATACAACTTCGTGATTTAGACATTAAGAAAGACCTTTACCATACAGTGCCGAAAGCAAAACAAATATTATCGAAAATCGATACATACAACACAGTTCTCGAAAAATTAGTATGTCTTAAACAAGCACTCAATAGTATTAACAAAAAAGATTCAAGTAACAATGTTGTTCTTTTAACTGCTGATGATTTATTACCAGTCTTTGTGTTCCTAGTCATAAAATCTGGTTTACCCAACTGGTTCAGTCAGTTGACATATATGAAAGAATTTCGGTTTAGTAGTGCTGGAAAATGTGATGGTGATGAAAGCGCATTTCTGATCACTACACTAGAAGCTGTCATTGGACACATACAATCAGGTGCATTAACAGGGCCTCCAGACCCAGAAGCCTACTACTATTATGAAAGTAATCTAACAGAAGAGAACTTGAGTTGCAAGCAGAGAAAAAGCAGTCTTACTGAATCTATATCCACTAGTGACACTTATAACAAAGAAGAAAATTTGGAATACATTTTTGAACTCATAAAAGCAAATCAATGCGAACAAGTCCAAACAATATTACAGAAAAACCAGAAACACCTTCAAAACCTTCAAAATAATGAAGATAATGTATTGAAAATAAGTCTTGATGATCTGTCTAATGATGAAGATGATGACAGTGATCTTGAAATATACCACAAACTCTGCCATCCTCTTTGTAACTGCAACAAATGCAAATGCAAGATTTCTAAAAATCTCCTTAAAACTTGTCCCACTATGACATCAAGAGATAGTCACGGCTTAACAGCGCTGCATGTGGCATCCATACATGGAAAAGCCACAATTGTCGAAACCCTGCTTGAAATGGGATCTGAAATCAATGCAACTGATCTCAACGAATGTTCAGCCCTACATTATGCTTCTTCTAGAGGTCATCAAAACGTTTTATTACTGCTTCTTCACTCTGGAGCAAATATAAACCAAAAAAACATTGACAAAAATACACCTCTACACTTAGCAGTTAATAATGGACATCTTCACTGTGTAAAAGCAATCATATACTTTGCTGAACATAGTGGAAGAAAGATAAATATTAATTGCGCTAATGAAAGTGGCAACACACCATTGCATTTGGCTTCAAAATGGGGTTATGAAGGTATAGCTAGACTTCTAATCGAACATGGGAGCGAACCTTCCCTTCAAAATAGCTATCATAAAACGGCTTTTGATTATGCTCATAATCTGAGAATACTTCAAGTTCTTAAATCCTGCACACCTAACTTATTTGAATACATACACATAACAAGTTCTGAAGTTAAAAAAATAAGTTGCGAATCTGAGAAACCAACATCACTTAAATTACAGAATTTAACTTTGAAATGTAGTGACACAAATGATGCTTCAAAGACCATTGAAAACCTAAAACTGATTGAAAGAATATTAAGAGCTATTTCATATGGTGATGTGAAGTTAGCTTGTTTCTACATGAATATAGATTACTCTGCCTTTATAGCCCCAGATAAGGAAAAAAGTAATTCTCTCTGTCATCCATTATGTGAATGCCAATATTGTAAGAGAAAAACAGAATCATGTACAGACTTTGATGTTAATGTTTGTGATTCAAATGGATTTACTGCATTACATTACGCTGCTCGTTACGGATTAGATGAGTTTTGTAACATTTTAATATTCAATCGAGCAAATGTTAACTGTCGTAATAAGAAAGCACAGACGCCCTTACATTTGGCGGCCATTAACAATAAGACTGTAGTCATACGTTTACTCCTTGACAATGGTGCTAATATAAATGCCATAGATGTTGCCCGTAACACACCTTTGCATGACGCTAGTGAAACTGGCAACATAGGAGCTGCAAAAATATTACTAAGTTACAACCCAGACATTACTTTACTTAATGCCACAGAAAAAACAGCTTTAGCAGTTGCTAAAGATAAAGTTCATTTAACTATAATAGACCTAATTGACAACTATGCAAATAAATATGCTAATACCTAA

Protein

MDGTYDEIVSENPFFLELKNEYANLFQHCLSESWIICVPRIGSLTSRVFTVEDFCAHLLVPSDELPETHFNTLTEKQVTVLNKVITVEVSKGLPLQSHILFEETFYTEDFMKYKVWCIESPLEPTKTTDDAVVSKEYLSGINDCIDLLWTQAAGRQVLDNIEQNVETFLKKHSNLPVAIGPLRDTVSELYTQCLQVTLQNRRLRDKSKSCKQVLENIKLSVESYMQHLLFDSIFKSICTSCAYEDAHLNKKIRNMCDIQLRDLDIKKDLYHTVPKAKQILSKIDTYNTVLEKLVCLKQALNSINKKDSSNNVVLLTADDLLPVFVFLVIKSGLPNWFSQLTYMKEFRFSSAGKCDGDESAFLITTLEAVIGHIQSGALTGPPDPEAYYYYESNLTEENLSCKQRKSSLTESISTSDTYNKEENLEYIFELIKANQCEQVQTILQKNQKHLQNLQNNEDNVLKISLDDLSNDEDDDSDLEIYHKLCHPLCNCNKCKCKISKNLLKTCPTMTSRDSHGLTALHVASIHGKATIVETLLEMGSEINATDLNECSALHYASSRGHQNVLLLLLHSGANINQKNIDKNTPLHLAVNNGHLHCVKAIIYFAEHSGRKININCANESGNTPLHLASKWGYEGIARLLIEHGSEPSLQNSYHKTAFDYAHNLRILQVLKSCTPNLFEYIHITSSEVKKISCESEKPTSLKLQNLTLKCSDTNDASKTIENLKLIERILRAISYGDVKLACFYMNIDYSAFIAPDKEKSNSLCHPLCECQYCKRKTESCTDFDVNVCDSNGFTALHYAARYGLDEFCNILIFNRANVNCRNKKAQTPLHLAAINNKTVVIRLLLDNGANINAIDVARNTPLHDASETGNIGAAKILLSYNPDITLLNATEKTALAVAKDKVHLTIIDLIDNYANKYANT

Uniprot

B7XEI6 H9ISE6 A0A2H1WVP5 A0A0L7L758 A0A194QT85 A0A194QBB2 + More
A0A212EW11 A0A2P8YZR9 H3AMB3

Pubmed

19552891 19121390 26227816 26354079 22118469 29403074 + More
9215903

EMBL

AB467312 BAH03677.1 BABH01040317 ODYU01011405 SOQ57131.1 JTDY01002572 + More
KOB71169.1 KQ461155 KPJ08215.1 KQ459232 KPJ02719.1 AGBW02012106 OWR45661.1 PYGN01000263 PSN49741.1 AFYH01158552 AFYH01158553 AFYH01158554 AFYH01158555 AFYH01158556 AFYH01158557 AFYH01158558 AFYH01158559 AFYH01158560

Proteomes

UP000005204 UP000037510 UP000053240 UP000053268 UP000007151 UP000245037 + More
UP000008672

PRIDE

B7XEI6 H9ISE6

Pfam

PF12796   Ank_2        + More
PF02204   VPS9
PF00023   Ank
PF00265   TK

Interpro

IPR002110   Ankyrin_rpt        + More
IPR037191   VPS9_dom_sf
IPR020683   Ankyrin_rpt-contain_dom
IPR036770   Ankyrin_rpt-contain_sf
IPR003123   VPS9
IPR001611   Leu-rich_rpt
IPR001267   Thymidine_kinase
IPR027417   P-loop_NTPase
IPR020633   Thymidine_kinase_CS

SUPFAM

SSF109993   SSF109993        + More
SSF48403   SSF48403
SSF52540   SSF52540

Gene 3D

1.20.1050.80 1.25.40.20

CDD

cd00204 ANK

ProteinModelPortal

B7XEI6 H9ISE6 A0A2H1WVP5 A0A0L7L758 A0A194QT85 A0A194QBB2 + More
A0A212EW11 A0A2P8YZR9 H3AMB3

PDB

4CZ2 E-value=2.81773e-32, Score=350

KEGG

100379656 K20175 ankyrin repeat domain-containing protein 27 | (RefSeq) Varp, BmVarp; putative VPS9-ankyrin re

GO

GO:0016021 GO:0004797 GO:0005524 GO:0005515 GO:0006468 GO:0004540 GO:0006397 GO:0004812 GO:0006418 GO:0003723 GO:0046872 GO:0003824

Length:

920

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.07413

Exp number, first 60 AAs:

0.00216

Total prob of N-in:

0.00319

outside

1 - 920

Pi

131.157011

Theta

172.773379

Tajima's D

-0.60158

CLR

0.079582

CSRT

0.213689315534223

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics