Gene

KWMTBOMO10224

Annotation

endonuclease-reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr17(-):5164969-5165957      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.432

CDS

ATGACCGTACAAATCCAGGATTGCCAGTCTAGACCTATCAAGCTGCAGCGGGGTGTCCGACAGGGAGATGTTATATCTCCGAAACTGTTCACCGCTGCACTTGAAGATGTCTTCAAGACGCTGGACTGGAAAACATGTAGAATCAACGTCAACGGAGAGTACATGTCACACCTTCGATTTGCCGATGACATAGTCTTAATATCGGAATCGCTGGAGGACCTCCGTCGTATGCTCAACGATCTCAATGCTGCTTCCCGATGCGTGGGACTGCGCATGAACCTTGACAAGACGAAAGTCATGTTCGATGATAAAATCGTCCCGGGCCAAGTTACCATCTCGAATGCAGTCGTTGAAGAGGTAAAAGACTTTGTCTACCTCGGTCAGGCTATCCAGCTTGACCGGGGTAACTTCAATACAGAGATTGAGAGACGCATACGACTGGGTTGGTCGGCATTTGGGAAATTCCGTGCAATCCTCACCTCGCAAATTCCTCAATGCCTGAAGAAAAAAGTATTTAACCATTCGCGCGTTCTCCCCGCGATGACCTATGGCACGGAAACCTGGACACTCACGGCAGGGCTGGCCCATAAGTTAAGAGTCGCACAGCGGGCGATGAAGAGAGCTAGGCTCGGTATTTCTCTAAGAGACAAAATCCGGAACGAAGAAATTCGACGGAGAACCAAAGTCGACGACATAGCTCTCAAAGTTAGCAGGCTGAAGTGGCAATGGGCCGGTCACATCTGTCGAGCCAGCGACGTCAGGTGGGGGAGGAAAGTCCTCGAATGGAGGCCACGGATGGGTACCAGGAGCGTGGGGCGTCCTCCAACCAGGTGGACTGACGACTTAGTGCGCACGGCGGGAAGTCGTTGGATGCGGAAGGCGGAGGACCGCATTATGTGGAAGGCATTGGGGAAGGCCTATGTCCAGCAGTAG

Protein

MTVQIQDCQSRPIKLQRGVRQGDVISPKLFTAALEDVFKTLDWKTCRINVNGEYMSHLRFADDIVLISESLEDLRRMLNDLNAASRCVGLRMNLDKTKVMFDDKIVPGQVTISNAVVEEVKDFVYLGQAIQLDRGNFNTEIERRIRLGWSAFGKFRAILTSQIPQCLKKKVFNHSRVLPAMTYGTETWTLTAGLAHKLRVAQRAMKRARLGISLRDKIRNEEIRRRTKVDDIALKVSRLKWQWAGHICRASDVRWGRKVLEWRPRMGTRSVGRPPTRWTDDLVRTAGSRWMRKAEDRIMWKALGKAYVQQ

Similarity

Belongs to the ATP-dependent DNA ligase family.

Uniprot

D7F160   D7F166   D7F157   A4KWF4   A4KWF2   D7F164   + More
A4KWG0   A0A3S2TAR4   D7F165   D7F159   D7F158   A0A3S2KX72   A0A2W1BMB6   W4YXJ1   A0A3S2LUJ5   A0A2W1BLC9   A0A3S2TRE0   A0A1E1X2U1   A0A2G8JFM9   A0A2W1B5F8   A0A2G8K4F2   A0A2W1BCS2   W4YXJ0   A0A023EXV2   A0A2G8KES6   D7F176   A0A0K0FAW8   A0A2H1VY30   D7F178   A0A2W1BSQ8   D7F177   A0A2W1BDX2   A0A016S1D2   A0A016UL89   A0A016U784   A0A016S403   A0A016V6V0   A0A016UMK7   A0A016RYK0   A0A016RXU5   A0A016U3R5   D7F179   A0A016V7H3   A0A016W591   A0A016W5P9   A0A016VV56   A0A016SUK5   A0A016SG46   A0A183UG87   A0A016VCK8   A0A016TK11   A0A016W4R1   A0A016WPY4   A0A016VRS7   A0A023GMF8   A0A016TIA8   A0A016WCB8   A0A016ULU9   A0A016UWI5   A0A016UTS3   A0A016VP58   W6NSV0   A0A016T193   A0A016VEC1   A0A016T7J7   A0A016WEQ1   A0A016VCD9   A0A016WA79   A0A016VCU3   A0A016SM07   A0A016S795   A0A016VBP7   A0A016SL25   A0A016RZ72   A0A016RY42   A0A016S5B2   A0A016T590   A0A016V419   A0A016RUR3   A0A016VVN3   A0A016WZF0   A0A069DX96   A0A016T805   A0A016X056   A0A016SGC3   A0A016SKW2   A0A016RRX8   A0A016SX67   A0A016RV73   A0A2H1WF27   A0A016SSW4   A0A023EWU8   W6NEE1   A0A0P4VWD0   A0A016SLV8   A0A016VD00  

Pubmed

20470440    17360547    28756777    28503490    29023486    25474469    + More
25730766    26334808    27129103   

EMBL

FJ265545    ADI61813.1    FJ265551    ADI61819.1    FJ265542    ADI61810.1    + More
EF113399    EF113400    ABO45233.1    EF113398    EF113401    ABO45231.1    FJ265549    ADI61817.1    EF113402    ABO45239.1    RSAL01002362    RVE40503.1    FJ265550    ADI61818.1    FJ265544    ADI61812.1    FJ265543    ADI61811.1    RSAL01002130    RVE40575.1    KZ150072    PZC74016.1    AAGJ04144474    RSAL01000007    RVE54059.1    KZ149985    PZC75698.1    RSAL01000016    RVE53061.1    GFAC01005640    JAT93548.1    MRZV01002136    PIK34564.1    KZ150317    PZC71439.1    MRZV01000899    PIK42833.1    KZ150485    PZC70710.1    AAGJ04050748    GBBI01004876    JAC13836.1    MRZV01000640    PIK46507.1    FJ265561    ADI61829.1    ODYU01004982    SOQ45402.1    FJ265563    ADI61831.1    KZ149912    PZC78089.1    FJ265562    ADI61830.1    KZ150108    PZC73382.1    JARK01001655    EYB84321.1    JARK01001372    EYC15592.1    JARK01001389    EYC11015.1    JARK01001639    EYB85201.1    JARK01001351    EYC23394.1    JARK01001370    EYC16151.1    JARK01001677    EYB83167.1    EYB83168.1    JARK01001396    EYC09581.1    FJ265564    ADI61832.1    EYC23395.1    JARK01000807    EYC34984.1    JARK01000732    EYC35149.1    JARK01001340    EYC31295.1    JARK01001512    EYB94036.1    JARK01001565    EYB89683.1    UYWY01019694    VDM38828.1    JARK01001348    EYC25145.1    JARK01001676    JARK01001446    JARK01001433    EYB83199.1    EYC01126.1    EYC02928.1    JARK01001337    EYC34625.1    JARK01000173    EYC41342.1    JARK01001341    EYC30284.1    GBBM01001358    JAC34060.1    JARK01001434    EYC02684.1    JARK01000388    EYC37469.1    EYC16150.1    JARK01001362    EYC18843.1    EYC18844.1    JARK01001343    EYC28837.1    CAVP010058791    CDL95187.1    JARK01001486    EYB96452.1    EYC25048.1    JARK01001736    JARK01001462    JARK01001379    JARK01001338    EYB80775.1    EYB98943.1    EYC13646.1    EYC33347.1    JARK01000347    EYC38051.1    EYC25050.1    JARK01000460    EYC36749.1    EYC25046.1    JARK01001543    EYB91354.1    JARK01001621    EYB86109.1    EYC25049.1    EYB91355.1    JARK01001674    EYB83299.1    EYB83300.1    JARK01001626    EYB85833.1    JARK01001473    EYB97806.1    JARK01001354    EYC21986.1    JARK01001711    EYB81734.1    EYC30828.1    JARK01000055    EYC44622.1    GBGD01000453    JAC88436.1    JARK01001464    EYB98786.1    EYC44623.1    JARK01001568    EYB89432.1    EYB91353.1    JARK01001730    EYB81048.1    JARK01001500    EYB95040.1    EYC28825.1    JARK01001700    JARK01001393    EYB82228.1    EYC10181.1    ODYU01008249    SOQ51673.1    JARK01001518    EYB93419.1    GBBI01004877    JAC13835.1    CAVP010058300    CDL94394.1    GDKW01001596    JAI54999.1    EYB91356.1    JARK01001349    EYC24583.1   

Proteomes

UP000283053    UP000007110    UP000230750    UP000035680    UP000024635    UP000050794    + More
UP000267007    UP000025227   

PRIDE

D7F160    D7F166    D7F157    D7F164    D7F165    D7F159    + More
D7F158    D7F176    D7F178    D7F177    D7F179   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF01826   TIL
PF11411   DNA_ligase_IV
PF04675   DNA_ligase_A_N
PF04679   DNA_ligase_A_C
PF01068   DNA_ligase_A_M
PF13855   LRR_8
PF10323   7TM_GPCR_Srv

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036084   Ser_inhib-like_sf       
IPR002919   TIL_dom       
IPR001357   BRCT_dom       
IPR036420   BRCT_dom_sf       
IPR012340   NA-bd_OB-fold       
IPR016059   DNA_ligase_ATP-dep_CS       
IPR012310   DNA_ligase_ATP-dep_cent       
IPR021536   DNA_ligase_IV_dom       
IPR029710   LIG4       
IPR000977   DNA_ligase_ATP-dep       
IPR012308   DNA_ligase_ATP-dep_N       
IPR036599   DNA_ligase_N_sf       
IPR012309   DNA_ligase_ATP-dep_C       
IPR032675   LRR_dom_sf       
IPR001611   Leu-rich_rpt       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR029052   Metallo-depent_PP-like       
IPR019426   7TM_GPCR_serpentine_rcpt_Srv       

SUPFAM

SSF56219   SSF56219        + More
SSF57567   SSF57567       
SSF52113   SSF52113       
SSF50249   SSF50249       

Gene 3D

3.60.10.10     1.10.3260.10     3.40.50.10190     3.80.10.10     3.60.21.10    

ProteinModelPortal

D7F160   D7F166   D7F157   A4KWF4   A4KWF2   D7F164   + More
A4KWG0   A0A3S2TAR4   D7F165   D7F159   D7F158   A0A3S2KX72   A0A2W1BMB6   W4YXJ1   A0A3S2LUJ5   A0A2W1BLC9   A0A3S2TRE0   A0A1E1X2U1   A0A2G8JFM9   A0A2W1B5F8   A0A2G8K4F2   A0A2W1BCS2   W4YXJ0   A0A023EXV2   A0A2G8KES6   D7F176   A0A0K0FAW8   A0A2H1VY30   D7F178   A0A2W1BSQ8   D7F177   A0A2W1BDX2   A0A016S1D2   A0A016UL89   A0A016U784   A0A016S403   A0A016V6V0   A0A016UMK7   A0A016RYK0   A0A016RXU5   A0A016U3R5   D7F179   A0A016V7H3   A0A016W591   A0A016W5P9   A0A016VV56   A0A016SUK5   A0A016SG46   A0A183UG87   A0A016VCK8   A0A016TK11   A0A016W4R1   A0A016WPY4   A0A016VRS7   A0A023GMF8   A0A016TIA8   A0A016WCB8   A0A016ULU9   A0A016UWI5   A0A016UTS3   A0A016VP58   W6NSV0   A0A016T193   A0A016VEC1   A0A016T7J7   A0A016WEQ1   A0A016VCD9   A0A016WA79   A0A016VCU3   A0A016SM07   A0A016S795   A0A016VBP7   A0A016SL25   A0A016RZ72   A0A016RY42   A0A016S5B2   A0A016T590   A0A016V419   A0A016RUR3   A0A016VVN3   A0A016WZF0   A0A069DX96   A0A016T805   A0A016X056   A0A016SGC3   A0A016SKW2   A0A016RRX8   A0A016SX67   A0A016RV73   A0A2H1WF27   A0A016SSW4   A0A023EWU8   W6NEE1   A0A0P4VWD0   A0A016SLV8   A0A016VD00  

KEGG

105841836    no KO assigned | (RefSeq) uncharacterized LOC105841836

GO

GO:0003964   GO:0004519   GO:0016021  

PANTHER

PTHR45997:SF1  

Length:

310

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.10676

Exp number, first 60 AAs:

0.00024

Total prob of N-in:

0.08262

outside

1  -  310

 

 

Pi

76.276185

Theta

116.159968

Tajima's D

-0.949969

CLR

412.992998

CSRT

0.146742662866857

Interpretation

Uncertain