Gene

KWMTBOMO10223

Pre Gene Modal

BGIBMGA014441

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_rho_GTPase-activating_protein_44_[Bombyx_mori]

Location

Bomo_Chr17(-):5147589-5152907      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.212

CDS

ATGAAGAAACAATTTTATAGAGTGAAACAACTTGCAGACCAAACGTTTTCAAGATCAGGAAAAGGAGAGGCCCTAACAGATGAACTACATACTGCTGACAGGAAAGTGGAAAACTTGCGAAATGCTTTACAGCTTGTTAGTAAAAGGCTTTCAACAGGTGCCGGAAATACACAAGGTCAAGATCCAGCTGCCAGAGAGAAAAGACTCAAAAAGCTTCCAGAGTATTTATTGGGCTTGTCCTTGTGTGAAGCTAGCAACTTTGATGATGATGACAGTATTTTAAAATTCATATTATATGAATGTGGTAAAACTGAGAAGTTCTTGGCTAACGAAATAGCTGAACACGAGTTAAAAGTGGAACAGTTGGTATGTGCACCTTTAACAGTAATCAGTGATCATGATCTACCAGCAATAATGAAAGCCAAAAAACAACTCAGCAGGCTAATTAGTGAGAAAGAGTCTGCAGCAAGTAGATACAATCATTTAGATAAACAAAAAGAGGAAAATCCCACAAAACTAGCAGCAGCCCGAGAGGAACTTGAAGAAGCTGGCACAAAAGTAGAGTCTGCACGAGATGCTCTTGCTGCGGATATGTTTGCCCTTGTAGCCAAAGAAGCTCAGCTTGCTCACACTCTACTGCAATATGTTAAATTACAGAGAGCTTACCATGAATCTGCCCTACACTCACTACAAGATACAGTACCAGAGTTGGAAAAGTTTATCAACGATAGTTCTGTGAAACCAGTTTTTGGATATCCATTGGAGGAACACTTGCGGGTTACTGGGCGCACCATTGCTTTTCCTATCGAGCTATGCGTCTGCACATTGCATGAATTGGCATTACATGAGGAGGGACTCTTCAGAATAGCTGGTGCAACATCAAAAGTGAGAAGAATGAAGCTTTCACTCGATGCGGGGTTATTCAGTGTGCCTTTACCACCGGATTACAGAGATATGCACGTTGTGGCGTCAGTACTCAAGTCATACTTGCGTGAACTGCCTGAGCCTCTACTGACATATAGGCTTTATGAGAATTTTATGAATGCGTCACGACAACCGACAGAACAGGCCAGACTTAACGCCCTATGGGAGTGTATTCATTTACTGCCCGATGCTAACTACCAAAACCTTAGATACCTAATAAAATTTTTGTCCGCTTTGACACAAAACCAAAATAAGAACAAAATGACGCCTTCAAATCTGGCCATCGTGGTGGCTCCCAACTTATTGTGGGCCGCTGATGAGAGCACTTTCGATATGAATATCACAACAGCTGTCAACTGCGTCGTGGAGCTCCTAATTAAACACGCAGACTGGTTTTTCAAGGACGAAGTTAACTTTTTCATTTCATTCACCAAAGAAGATTTGCTACCAGGCCTGTACCAAGACGGTTTCACCCCTAATTTCGGCCACGGATACAATCAAACCGCCGCCCTCGCTCAAGATCAATCTAACGGCGAATACAGCAGCATGAGCAAATCGATGTTCGATTATAACCACCACTCGGAACAGGTCAAGTACAGTCAAGTCAAGGTCGCGGCCGACGGTCCCGGCCGACATTCACGGAGCAACAGTCACGACACCAGCCTCATCTTATTAGAAAGTGACATCAAGAAGGCACAGTCCAATAGTTCCCTTTCCGACCAATCCAGCCCGCCCCACGGAAGTCCCAAACCAATAACGAGGCGGAAAAACAAACCTCTCGCTCCGGTCCCGCCAAATTTTACTCCAGACAAAAACAAAAAAACGGATACTCAAACGCAAACAACAGCCCAAACTCAAGCCGAAACTACGAGAGAGATACAGCCCGCAGCGAAAACCGAAGTCGAGAAACCGGCCAAGCCACCGAGACCAGTCATATCCGACACCGGTAAGGTGATCACTGGGGTGCAGACGATCAATCGGTCCACATATCGGCAGAACAAGGCGCTCAAGGAGGAGGCCGCCCGCGAACTCGTGTCAGATGCGCGGCGACAGAGTCTCGAGCTAGAGCGAGACGGAACGGAGCTCTCGCGAGCCGACTGCACCCTTGTCGTGCGTAACCTCACCGCGCACACCGGGGTCGTCGGCCGTATGAAGGTGGTCGGAGACGCCCGCTCCCCCCTCCTTGCTGGCAAGCAGCCCCCGCCTCGACCCGTAGCGGCACCGCGCACTCTCGTACCTGTAGCGACGGACCTCGACGCAGACGTCACCCTGCGCAACAAGCCTGCCGTGCCCGAGCGGCCGGCCACACTGCGGCCGCAAAGCTTCCACGCCCCTCGGGGCTCTTCTTCCTCTGACGTGGAAGTCGCGCCGACCGTGCTCGAGCGGACGCACATCTACACAGTGGACAAACAACAACCGACTGTGATCCAGGTGGGCGGCGGCGACGAGGCTCCGCGGGCGACTGTGCAGCGCACGCACAGTTCCGGCGGTAAGGACGCAGAGCTCGACGAGGGCAAGGGTCTGAGTGCGAGCCGGCAGCTGTCGCAGTCGGAAGGCAGTATCGCCGAGTCTCCGTCGCCGCGCGCACGCCCGGCGCGGCCGCAGGTGCCAGCGCCACCGCCGCCGGTGTCCGTCTCCTCGCCGGAGTCCGCCCCGCCGGCGTCCCTCTCGCAGCCGGAGTCACTCCCACCGGCGGCGTCGGTTCCGCTGCAGGAGAGCACAAACTTGTAG

Protein

MKKQFYRVKQLADQTFSRSGKGEALTDELHTADRKVENLRNALQLVSKRLSTGAGNTQGQDPAAREKRLKKLPEYLLGLSLCEASNFDDDDSILKFILYECGKTEKFLANEIAEHELKVEQLVCAPLTVISDHDLPAIMKAKKQLSRLISEKESAASRYNHLDKQKEENPTKLAAAREELEEAGTKVESARDALAADMFALVAKEAQLAHTLLQYVKLQRAYHESALHSLQDTVPELEKFINDSSVKPVFGYPLEEHLRVTGRTIAFPIELCVCTLHELALHEEGLFRIAGATSKVRRMKLSLDAGLFSVPLPPDYRDMHVVASVLKSYLRELPEPLLTYRLYENFMNASRQPTEQARLNALWECIHLLPDANYQNLRYLIKFLSALTQNQNKNKMTPSNLAIVVAPNLLWAADESTFDMNITTAVNCVVELLIKHADWFFKDEVNFFISFTKEDLLPGLYQDGFTPNFGHGYNQTAALAQDQSNGEYSSMSKSMFDYNHHSEQVKYSQVKVAADGPGRHSRSNSHDTSLILLESDIKKAQSNSSLSDQSSPPHGSPKPITRRKNKPLAPVPPNFTPDKNKKTDTQTQTTAQTQAETTREIQPAAKTEVEKPAKPPRPVISDTGKVITGVQTINRSTYRQNKALKEEAARELVSDARRQSLELERDGTELSRADCTLVVRNLTAHTGVVGRMKVVGDARSPLLAGKQPPPRPVAAPRTLVPVATDLDADVTLRNKPAVPERPATLRPQSFHAPRGSSSSDVEVAPTVLERTHIYTVDKQQPTVIQVGGGDEAPRATVQRTHSSGGKDAELDEGKGLSASRQLSQSEGSIAESPSPRARPARPQVPAPPPPVSVSSPESAPPASLSQPESLPPAASVPLQESTNL

Uniprot

A0A3S2LU45   A0A2H1VT66   A0A194QB73   A0A212FFE5   A0A194QXB9   A0A2A4JA08   + More
A0A1E1WG87   A0A1E1WNA5   A0A0L7LS79   A0A2P8YZS9   A0A2J7QD87   A0A2J7QD90   A0A1L8DM05   A0A1L8DLU5   A0A1L8DLW2   A0A0N8D2K1   A0A0P5M3M8   A0A0P5E3B0   A0A0P5VZK0   A0A0P5GBG8   A0A0P5NVZ3   A0A0P5NGF1   A0A0P5R0V8   A0A0P6AI47   A0A0P5RJ46   A0A0P5QR98   A0A0P6GJJ7   A0A0P6GFL7   A0A0P6F3B6   A0A0P5C9H7   A0A0P6DJJ7   A0A0P6EZ05   A0A0P6ETH6   A0A0P5L336   A0A0P5I747  

Pubmed

26354079    22118469    26227816    29403074   

EMBL

RSAL01000200    RVE44460.1    ODYU01004284    SOQ43988.1    KQ459232    KPJ02712.1    + More
AGBW02008828    OWR52452.1    KQ461155    KPJ08221.1    NWSH01002300    PCG68586.1    GDQN01005065    JAT85989.1    GDQN01002713    JAT88341.1    JTDY01000251    KOB78056.1    PYGN01000263    PSN49744.1    NEVH01015826    PNF26550.1    PNF26551.1    GFDF01006643    JAV07441.1    GFDF01006641    JAV07443.1    GFDF01006642    JAV07442.1    GDIP01075039    JAM28676.1    GDIQ01161409    JAK90316.1    GDIP01152232    JAJ71170.1    GDIP01092936    JAM10779.1    GDIQ01270990    GDIQ01250782    GDIQ01207137    GDIQ01199450    GDIQ01162714    GDIQ01147024    JAK00943.1    GDIQ01207138    GDIQ01199449    GDIQ01169501    GDIQ01165608    GDIQ01162713    GDIQ01147025    GDIQ01099584    GDIQ01097987    GDIQ01032205    JAL04701.1    GDIQ01153215    JAK98510.1    GDIQ01107119    JAL44607.1    GDIP01029445    JAM74270.1    GDIQ01109320    JAL42406.1    GDIQ01111126    JAL40600.1    GDIQ01033811    JAN60926.1    GDIQ01033810    JAN60927.1    GDIQ01058144    GDIQ01055547    JAN39190.1    GDIP01189866    JAJ33536.1    GDIQ01075937    JAN18800.1    GDIQ01055495    JAN39242.1    GDIQ01058145    JAN36592.1    GDIQ01176101    JAK75624.1    GDIQ01218580    JAK33145.1   

Proteomes

UP000283053    UP000053268    UP000007151    UP000053240    UP000218220    UP000037510    + More
UP000245037    UP000235965   

Pfam

PF03114   BAR        + More
PF00620   RhoGAP

Interpro

IPR000198   RhoGAP_dom        + More
IPR008936   Rho_GTPase_activation_prot       
IPR027267   AH/BAR_dom_sf       
IPR004148   BAR_dom       

SUPFAM

SSF48350   SSF48350        + More
SSF103657   SSF103657       

Gene 3D

1.10.555.10     1.20.1270.60    

ProteinModelPortal

A0A3S2LU45   A0A2H1VT66   A0A194QB73   A0A212FFE5   A0A194QXB9   A0A2A4JA08   + More
A0A1E1WG87   A0A1E1WNA5   A0A0L7LS79   A0A2P8YZS9   A0A2J7QD87   A0A2J7QD90   A0A1L8DM05   A0A1L8DLU5   A0A1L8DLW2   A0A0N8D2K1   A0A0P5M3M8   A0A0P5E3B0   A0A0P5VZK0   A0A0P5GBG8   A0A0P5NVZ3   A0A0P5NGF1   A0A0P5R0V8   A0A0P6AI47   A0A0P5RJ46   A0A0P5QR98   A0A0P6GJJ7   A0A0P6GFL7   A0A0P6F3B6   A0A0P5C9H7   A0A0P6DJJ7   A0A0P6EZ05   A0A0P6ETH6   A0A0P5L336   A0A0P5I747  

PDB

3IUG     E-value=4.6803e-23,     Score=270

KEGG

101737160    K20638 Rho GTPase-activating protein 17 | (RefSeq) rho GTPase-activating protein 44

GO

GO:0005096   GO:0007165   GO:0005737   GO:0016021   GO:0005515   GO:0006437   GO:0004812   GO:0006418   GO:0003723   GO:0046872   GO:0003824  

Length:

884

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00736999999999999

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00056

outside

1  -  884

 

 

Pi

173.523657

Theta

176.456785

Tajima's D

-0.435117

CLR

2.131363

CSRT

0.261536923153842

Interpretation

Uncertain