Gene

KWMTBOMO10220  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005597

Annotation

PREDICTED:_WD_repeat-containing_protein_3-like_[Bombyx_mori]

Location

Bomo_Chr17(-):5125209-5134877      View in EpiBrowser

Full name

WD repeat-containing protein 3      

Location in the cell

Cytoplasmic   Reliability : 1.919

CDS

ATGGGTCTAACTAAACAATATCTGCGGTACGCCCCGACCGGCTCTTTTAATATTATTGCAAGTGCAGACTGTAATAGCACACATGTAACATTGAATGGTATTAGTGGTAGATACATCGCTGTTGGAGCATGTGAACATGTTATTATTTGGGACATGAAACTTGGTGAAAAGGCACAAGTGTTGCCTGGAGAGAATGTAGTTGTAACACAACTTGCCGCAAGTCCTACTGGAAACCACATGGCCGTTGGTTTGTTTGATGGAAATATTAATGTATTTGAACTCACCAACAATGAAGTAGTTTGTGTATTTGCTGGACACAAATCTGCTATTACTTGCTTGCAGTTTGATGACCAAGGACACCGTTTGGTATCTGGATCAAAGGACACAGAAGTAATTCTTTGGGATGTGATATCAGAAACAGGTAAAGTAAGGTTCAGTGGCCACAAAGGTGTTATCACAAGTGTGTCATTTATAAATGGAAAAAACTGCATTGTGACTTCATCAAAAGACACATTTGTCAAGTTTTGGGATATTGAGACTAAACATTGCTTCAAGACACTTGGAGGGCATCAGATGGAGGTGTGGGCTGCAGTGCTCTTAAAAGAGGAGAGGTACTTAGTAACAGGAAGTATGGACCAAGAGCTTAGAGTATGGAAATTAAACTGGACTGAGGATGTAAAAGACGAGGATAAACTAAAACATCAACTTGAAATAGTCAAACTAGAAGAAACTGACGAAATCGAAGAGAGCTCTGTTTTACAATGTCATCAAGTTGGAACATTAGTAAGAGGTGGTAAAGGAAGAGTTGTGGGTATTGCAACGGACCCAGGGCAGACTGTATTAGCCTGTTATGGAACCGATTCCCTTCTCGAACTTTTTGCTTTCTGCTCAGATGAACAGGCTAAAATGAGAATGGATAAACGAATAAAGAAGCGACGAAAAAAATTAGCTAAACTTAAAGAAACTGGTGAAGTGGACCCGGAAATTACAGAGATACCCCAAATATTAACACTATCAGATGAAGTGAGAAGGCTGACTTCAGTTAAGGTGAATTCCAAGTTAAAGTCTGCAACATTGTTACTGGGTACCACAGGGGAGGTGCGTGTTGGTATTACACTGGCTAACAATACAGTTGAACTGCATAGTTTGAAACTAGAAGATGGAGATGAAGTGCGGTGCTTAAAACAAATAACTCAGCCTGGTCATCAAAAGGACCCCAGATGTGTAGTGATCAGTTCAGATAACTTAGCAATACTGTCTGCATCAGCAGATTCCATCAAACTCTGGAATAGATCTAGTCAGACGTGCATCCGTACGATGGAGGTGCCGTGCGGGCGGCCGCTGTGCGCCGCGCTGGCCCCGGGTGACCGCCACGCGCTGGTGGGGTGTGCGGGGGGGGCGCTGCTGGTGCTGGACGTGGCGGCCGGACGACTCCTCGAGACCATACCCGCGCACACGGACAACTGCACCGCCCTAGGACTCACTCCGGATCTGAGAGGCTGCTACACGGGTGGAGCCGACAAAACTGTAAAGCTATGGCAGTTCGAATTAATAAATGATCCAATAGTCGAAGCCAAAGGAAAGGTTTTATCATTACTTCATACTAGAACACTGAAATTGGAAGAGCAAGTGTCAGCTGTAAAAATCAGTCCCAACAACAAATTCATCGCGGTCGCCTTATTAGACTGTACTGTTAAAATATTTTTCCTTGATACATTTAAGTTCTACCTTTCTCTTTACGGGCACAAGCTGCCAGTGCTCTGTCTGGACATAAGCTACGACTCGAACCTCATAGCTACGGGCTCGGCGGACCGCAACGTCAAGACGTGGGGCATGGACTTCGGCGACTGTCACAAGTCGATATTCGCGCACAACGATTCCATAACCGCGCTGCAGTTCGTGCCCAACACGCACTACTTCTTCACGGGCTCGAAGGACGGGAAGATCAAGCAGTGGGACGCCGACACCTCCGAGAATATCATCACGCTGAATGTGAGTCGTGCCGGTTTGTCAGTATCATCTATCTCAGGCAAATATTTTGATAGTGGGGCCACATTGCAGATGAAAATTTGA

Protein

MGLTKQYLRYAPTGSFNIIASADCNSTHVTLNGISGRYIAVGACEHVIIWDMKLGEKAQVLPGENVVVTQLAASPTGNHMAVGLFDGNINVFELTNNEVVCVFAGHKSAITCLQFDDQGHRLVSGSKDTEVILWDVISETGKVRFSGHKGVITSVSFINGKNCIVTSSKDTFVKFWDIETKHCFKTLGGHQMEVWAAVLLKEERYLVTGSMDQELRVWKLNWTEDVKDEDKLKHQLEIVKLEETDEIEESSVLQCHQVGTLVRGGKGRVVGIATDPGQTVLACYGTDSLLELFAFCSDEQAKMRMDKRIKKRRKKLAKLKETGEVDPEITEIPQILTLSDEVRRLTSVKVNSKLKSATLLLGTTGEVRVGITLANNTVELHSLKLEDGDEVRCLKQITQPGHQKDPRCVVISSDNLAILSASADSIKLWNRSSQTCIRTMEVPCGRPLCAALAPGDRHALVGCAGGALLVLDVAAGRLLETIPAHTDNCTALGLTPDLRGCYTGGADKTVKLWQFELINDPIVEAKGKVLSLLHTRTLKLEEQVSAVKISPNNKFIAVALLDCTVKIFFLDTFKFYLSLYGHKLPVLCLDISYDSNLIATGSADRNVKTWGMDFGDCHKSIFAHNDSITALQFVPNTHYFFTGSKDGKIKQWDADTSENIITLNVSRAGLSVSSISGKYFDSGATLQMKI

Similarity

Belongs to the WD repeat WDR3/UTP12 family.

Keywords

Complete proteome   Isopeptide bond   Nucleus   Phosphoprotein   Polymorphism   Reference proteome   Repeat   Ubl conjugation   WD repeat  

Feature

chain  WD repeat-containing protein 3
sequence variant  In dbSNP:rs3738420.

Uniprot

A0A2A4J943   A0A3S2LDN3   A0A2H1WZR4   S4PEM8   A0A194QBA2   A0A212FFD4   + More
D6WGH6   A0A1Y1LSZ9   A0A1W4X783   A0A067R8M8   A0A2J7QW03   N6U4H5   U4UIV3   A0A2A3E8V5   A0A154PL69   A0A0J7KC35   A0A0L7QKA9   A0A0C9R4Q1   A0A0M8ZVG5   A0A0L7LRH0   A0A232EJV2   K7J604   A0A151WUZ6   A0A158NZ07   A0A195FTD8   A0A151IA59   A0A151J6D7   F4X2C8   E9IQD8   A0A026VWH1   E2B149   A0A1B6DL56   A0A1B6E343   A0A1B6FFU3   V9KCS5   A0A2I0MLP2   K7GHB9   A0A218VCT1   A0A3L8SB57   H0ZT03   A0A3M0K3L2   U3JR87   A0A1U7UDY7   A0A1B6KZ44   A0A093GS16   A0A2J8SQI7   Q5TDG3   Q9UNX4   I3M2F2   A0A0D9S634   E9GRK4   A0A1V4JB99   G1P0B7   G3R3D2   A0A195BKX5   A0A1U8CDC9   A0A2I2YJK1   A0A1S3AGT5   G1QZU4   A0A2K5EE83   A0A2K6S763   A0A2R9A3E8   A0A2K5SEM8   A0A2I3SBG1   M3ZBK8   A0A2K5EEB3   A0A2K5EE50   A0A2K5SEM2   A0A2K6S790   A0A091GG97   A0A2K6M4B6   G1STC6   A0A3Q7RY36   H0VIW1   A0A2K6M4B9   A0A2K6NU40   A0A2D4M539   F7DI33   A0A2K6NU52   A0A2K6NU55   H2N671   A0A2K5ITC8   Q8BHB4   A0A2K6D9L1   A0A2K5WHR9   A0A2K5MR85   F6WR72   I0FNP0   H9Z272   A0A3Q1EKS2   G7NX60   A0A2K5Z4K2   A0A096N471   A0A2K5MRK9   H9EUP2   F6WR92   A0A3Q1FAW8   A0A0P6JBL2   A0A061IKB4  

Pubmed

23622113    26354079    22118469    18362917    19820115    28004739    + More
24845553    23537049    26227816    28648823    20075255    21347285    21719571    21282665    24508170    30249741    20798317    24402279    23371554    17381049    30282656    20360741    11181995    10395803    12429849    17081983    18669648    19413330    19690332    20068231    21406692    23186163    28112733    21292972    21993624    22398555    22722832    16136131    25362486    19892987    16141072    15489334    21183079    17431167    25319552    22002653    23929341   

EMBL

NWSH01002300    PCG68595.1    RSAL01000200    RVE44463.1    ODYU01012311    SOQ58565.1    + More
GAIX01004422    JAA88138.1    KQ459232    KPJ02709.1    AGBW02008828    OWR52455.1    KQ971321    EFA00178.1    GEZM01051374    JAV75005.1    KK852667    KDR18931.1    NEVH01009768    PNF32769.1    APGK01042944    KB741011    ENN75521.1    KB632341    ERL93002.1    KZ288322    PBC28148.1    KQ434943    KZC12214.1    LBMM01009901    KMQ87804.1    KQ414954    KOC59058.1    GBYB01002940    JAG72707.1    KQ435827    KOX71955.1    JTDY01000251    KOB78057.1    NNAY01003944    OXU18608.1    KQ982720    KYQ51674.1    ADTU01004460    KQ981276    KYN43572.1    KQ978235    KYM96065.1    KQ979883    KYN18672.1    GL888577    EGI59388.1    GL764736    EFZ17216.1    KK107762    QOIP01000003    EZA47881.1    RLU25156.1    GL444789    EFN60573.1    GEDC01010930    GEDC01005609    JAS26368.1    JAS31689.1    GEDC01016211    GEDC01004952    JAS21087.1    JAS32346.1    GECZ01020729    JAS49040.1    JW863191    AFO95708.1    AKCR02000007    PKK30586.1    AGCU01152311    AGCU01152312    AGCU01152313    MUZQ01000007    OWK63894.1    QUSF01000035    RLV98978.1    ABQF01027446    ABQF01027447    QRBI01000120    RMC07638.1    AGTO01011239    GEBQ01023287    JAT16690.1    KL216440    KFV69589.1    NDHI03003555    PNJ23036.1    AK292438    CH471122    BAF85127.1    EAW56685.1    AF083217    AGTP01080084    AQIB01086245    GL732560    EFX77789.1    LSYS01008075    OPJ69369.1    AAPE02034371    CABD030005600    KQ976444    KYM86195.1    ADFV01041720    AJFE02017256    AJFE02017257    AACZ04034376    GABC01003014    GABF01000782    GABD01009261    GABE01002540    NBAG03000423    JAA08324.1    JAA21363.1    JAA23839.1    JAA42199.1    PNI26422.1    KL447412    KFO73162.1    AAGW02000730    AAKN02004675    IACM01065642    LAB28198.1    ABGA01042346    ABGA01042347    AK050738    AK050797    BC063100    AQIA01002746    JSUE03002272    JSUE03002273    JV045995    AFI36066.1    JU473234    AFH30038.1    CM001276    EHH50213.1    AHZZ02016721    JU322345    AFE66101.1    JV565057    CM001253    AFJ70392.1    EHH15105.1    GEBF01001944    JAO01689.1    KE664511    ERE89897.1   

Proteomes

UP000218220    UP000283053    UP000053268    UP000007151    UP000007266    UP000192223    + More
UP000027135    UP000235965    UP000019118    UP000030742    UP000242457    UP000076502    UP000036403    UP000053825    UP000053105    UP000037510    UP000215335    UP000002358    UP000075809    UP000005205    UP000078541    UP000078542    UP000078492    UP000007755    UP000053097    UP000279307    UP000000311    UP000053872    UP000007267    UP000197619    UP000276834    UP000007754    UP000269221    UP000016665    UP000189704    UP000053875    UP000005640    UP000005215    UP000029965    UP000000305    UP000190648    UP000001074    UP000001519    UP000078540    UP000189706    UP000079721    UP000001073    UP000233020    UP000233220    UP000240080    UP000233040    UP000002277    UP000053760    UP000233180    UP000001811    UP000286640    UP000005447    UP000233200    UP000002281    UP000001595    UP000233080    UP000000589    UP000233120    UP000233100    UP000233060    UP000006718    UP000257200    UP000009130    UP000233140    UP000028761    UP000030759   

PRIDE

Q5TDG3    Q9UNX4    Q8BHB4   

Pfam

PF00400   WD40        + More
PF04003   Utp12
PF12894   ANAPC4_WD40

Interpro

IPR017986   WD40_repeat_dom        + More
IPR001680   WD40_repeat       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR007148   SSU_processome_Utp12       
IPR019775   WD40_repeat_CS       
IPR020472   G-protein_beta_WD-40_rep       
IPR036322   WD40_repeat_dom_sf       
IPR011044   Quino_amine_DH_bsu       
IPR024977   Apc4_WD40_dom       
IPR018391   PQQ_beta_propeller_repeat       
IPR011043   Gal_Oxase/kelch_b-propeller       

SUPFAM

SSF50998   SSF50998        + More
SSF50978   SSF50978       
SSF50969   SSF50969       
SSF50965   SSF50965       

Gene 3D

2.130.10.10    

ProteinModelPortal

A0A2A4J943   A0A3S2LDN3   A0A2H1WZR4   S4PEM8   A0A194QBA2   A0A212FFD4   + More
D6WGH6   A0A1Y1LSZ9   A0A1W4X783   A0A067R8M8   A0A2J7QW03   N6U4H5   U4UIV3   A0A2A3E8V5   A0A154PL69   A0A0J7KC35   A0A0L7QKA9   A0A0C9R4Q1   A0A0M8ZVG5   A0A0L7LRH0   A0A232EJV2   K7J604   A0A151WUZ6   A0A158NZ07   A0A195FTD8   A0A151IA59   A0A151J6D7   F4X2C8   E9IQD8   A0A026VWH1   E2B149   A0A1B6DL56   A0A1B6E343   A0A1B6FFU3   V9KCS5   A0A2I0MLP2   K7GHB9   A0A218VCT1   A0A3L8SB57   H0ZT03   A0A3M0K3L2   U3JR87   A0A1U7UDY7   A0A1B6KZ44   A0A093GS16   A0A2J8SQI7   Q5TDG3   Q9UNX4   I3M2F2   A0A0D9S634   E9GRK4   A0A1V4JB99   G1P0B7   G3R3D2   A0A195BKX5   A0A1U8CDC9   A0A2I2YJK1   A0A1S3AGT5   G1QZU4   A0A2K5EE83   A0A2K6S763   A0A2R9A3E8   A0A2K5SEM8   A0A2I3SBG1   M3ZBK8   A0A2K5EEB3   A0A2K5EE50   A0A2K5SEM2   A0A2K6S790   A0A091GG97   A0A2K6M4B6   G1STC6   A0A3Q7RY36   H0VIW1   A0A2K6M4B9   A0A2K6NU40   A0A2D4M539   F7DI33   A0A2K6NU52   A0A2K6NU55   H2N671   A0A2K5ITC8   Q8BHB4   A0A2K6D9L1   A0A2K5WHR9   A0A2K5MR85   F6WR72   I0FNP0   H9Z272   A0A3Q1EKS2   G7NX60   A0A2K5Z4K2   A0A096N471   A0A2K5MRK9   H9EUP2   F6WR92   A0A3Q1FAW8   A0A0P6JBL2   A0A061IKB4  

PDB

5OQL     E-value=3.1226e-102,     Score=952

KEGG

101737448    K14556 U3 small nucleolar RNA-associated protein 12 | (RefSeq) WD repeat-containing protein 3-like

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0032040   GO:0034388   GO:0031965   GO:0005730   GO:0005634   GO:0006364   GO:0005654   GO:0003723   GO:0005515   GO:0006355   GO:0008270   GO:0043565   GO:0030942   GO:0006221   GO:0006402   GO:0046872   GO:0003824  

Subcellular location

  

Length:

690

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.1226

Exp number, first 60 AAs:

0.05582

Total prob of N-in:

0.00346

outside

1  -  690

 

 

Pi

178.483971

Theta

158.266208

Tajima's D

0.281419

CLR

0.017084

CSRT

0.453777311134443

Interpretation

Uncertain