Gene

KWMTBOMO10219

Pre Gene Modal

BGIBMGA005598

Annotation

PREDICTED:_WD_repeat-containing_protein_3-like_[Bombyx_mori]

Location

Bomo_Chr17(-):5118102-5124657      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.826 Mitochondrial   Reliability : 1.285

CDS

ATGGGCCACGCGGGCGCGTGCCACGGCGTGTGCGTGGGCGCGGGCGGGCTGCACGCGGCGTCGTGCGGCGCGGACGGCGCCGTGCGGCTGTGGGCGCGCACGGACGAGCCGCTCGTGCTCGGCGACACCGACGAGCGCGACGAGGGACTCGCCACCGGAGAACAACATGCACCCGTACCTGGTTTACCGGGTCTTCAAATGCCAACTAAGAAAACTATAGGCGCAGAGAAAGCTGCGGATTCGATCATGGAATGCTTGTCAGTCGGCGCTGAATACAAGCGCGAGCTATCCGAAGCTCGGGGTCAGTTCGTTCAGCCGCCCCTCCTGATGGCTGCCTTCAACTGCACCACACCCGAGGACTTCTTCGTCGAGACCGTCAAGAGAGTCAGATCAAGTGATTTAGAAGAAGCCCTGCTGCTGATACCGTTCAGCGTGGCGTGCGACATAGTGCGCGTGCTGCCGACGCTGTTGGAGCGCGGCGACCACACGGAGCTGTACTGCAGGGTGGCGCTCTTCCTCCTCAAGATACATCACGCGCCCCTCGTCGCCAACAAGGCTCTGTTAAAGCACATCATACAAATACAAGCGAAGGCCTCAATCAAATTAAACGAATTGAGGGATATGGTCGGATATAACCTACACGCTCTACAATGGATGAAGCGAGACATCGAGGCGGCTGAAAGCGTGCAGTTGTTCAGAGAGGCGACCCAAATGAGAGTCAACAAAGACAAGCGTCGCAGAACCCGGCAAGCCCTCAAGAGGCCCATTGTTACAGTTACGTGA

Protein

MGHAGACHGVCVGAGGLHAASCGADGAVRLWARTDEPLVLGDTDERDEGLATGEQHAPVPGLPGLQMPTKKTIGAEKAADSIMECLSVGAEYKRELSEARGQFVQPPLLMAAFNCTTPEDFFVETVKRVRSSDLEEALLLIPFSVACDIVRVLPTLLERGDHTELYCRVALFLLKIHHAPLVANKALLKHIIQIQAKASIKLNELRDMVGYNLHALQWMKRDIEAAESVQLFREATQMRVNKDKRRRTRQALKRPIVTVT

Uniprot

A0A2H1WY55   A0A2A4J943   A0A3S2LDN3   H9J7V5   A0A194QBA2   A0A194QSD0   + More
D6WGH6   A0A1Y1LSZ9   A0A182GKW0   Q17D07   A0A1S4F7D5   A0A2J7QW14   A0A154PL69   A0A0M8ZVG5   A0A1W4X783   A0A0L7QKA9   A0A1Q3EWJ3   B0WP86   A0A067R8M8   A0A195FTD8   A0A2J7QW03   A0A182NQZ1   A0A2P8XHD6   B4QUG6   A0A0J7KC35   N6U4H5   U4UIV3   A0A182J8U8   A0A182SWA2   A0A151IA59   A0A151WUZ6   F4X2C8   B4JZ20   B4KD74   A0A151J6D7   B3NZ78   A0A084W0J7   Q9VE98   A0A182YNC9   E9IQD8   B4NG81   A0A1W4U810   A0A0L0BWF5   B4PLA1   A0A1I8MHE7   A0A026VWH1   B4LZ99   A0A182JRG0   A0A336MMB4   A0A182VW73   A0A158NZ07   A0A1A9Y3Z2   A0A1A9WRW0   A0A182PR80   A0A182M2S4   E2BTJ4   A0A0C9R4Q1   A0A336KWX1   A0A034W1A6   A0A0A1WKZ9   A0A1A9VVU7   A0A1A9Z3Q0   A0A0K8V814   A0A1B0FLA4   A0A2A3E8V5   A0A2Y9D160   A0A182XP00   Q7PX03   A0A1Y9H9H7   A0A182L8D1   A0A1I8JVC0   A0A182TMX9   A0A0M3QXX4   A0A1B0BSN0   W5J8H6   Q296K3   B4GF14   A0A195BKX5   A0A2M3Z5P1   A0A182RFZ7   E2B149   B3MTP8   A0A088A342   A0A182FS98   A0A2M4BCN3   A0A3B0JNR7   A0A232EJV2   A0A1J1HY36   K7J604   A0A2S2PQK8   J9JP42   A0A0P6DVQ2   E0V9Q5   A0A0P5NHU9   A0A1B6DL56   A0A2H8TGX8   A0A0P5GJX1  

Pubmed

19121390    26354079    18362917    19820115    28004739    26483478    + More
17510324    24845553    29403074    17994087    23537049    21719571    24438588    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    25244985    21282665    26108605    17550304    25315136    24508170    30249741    21347285    20798317    25348373    25830018    12364791    14747013    17210077    20966253    20920257    23761445    15632085    28648823    20075255    20566863   

EMBL

ODYU01011923    SOQ57937.1    NWSH01002300    PCG68595.1    RSAL01000200    RVE44463.1    + More
BABH01020010    BABH01020011    BABH01020012    BABH01020013    KQ459232    KPJ02709.1    KQ461155    KPJ08224.1    KQ971321    EFA00178.1    GEZM01051374    JAV75005.1    JXUM01070726    KQ562623    KXJ75472.1    CH477301    EAT44252.1    NEVH01009768    PNF32770.1    KQ434943    KZC12214.1    KQ435827    KOX71955.1    KQ414954    KOC59058.1    GFDL01015363    JAV19682.1    DS232020    EDS32131.1    KK852667    KDR18931.1    KQ981276    KYN43572.1    PNF32769.1    PYGN01002122    PSN31419.1    CM000364    EDX12466.1    LBMM01009901    KMQ87804.1    APGK01042944    KB741011    ENN75521.1    KB632341    ERL93002.1    KQ978235    KYM96065.1    KQ982720    KYQ51674.1    GL888577    EGI59388.1    CH916378    EDV98635.1    CH933806    EDW14856.1    KQ979883    KYN18672.1    CH954181    EDV48620.1    ATLV01019122    KE525262    KFB43741.1    AE014297    AY047497    AAF55529.1    AAK77229.1    GL764736    EFZ17216.1    CH964251    EDW83298.1    JRES01001243    KNC24363.1    CM000160    EDW95883.1    KK107762    QOIP01000003    EZA47881.1    RLU25156.1    CH940650    EDW68134.1    UFQT01001734    SSX31574.1    ADTU01004460    AXCM01000085    GL450410    EFN81022.1    GBYB01002940    JAG72707.1    UFQS01001121    UFQT01001121    SSX09098.1    SSX29009.1    GAKP01011389    JAC47563.1    GBXI01015509    GBXI01014981    JAC98782.1    JAC99310.1    GDHF01017431    JAI34883.1    CCAG010010321    KZ288322    PBC28148.1    APCN01000816    AAAB01008987    EAA01008.3    AXCN02001485    CP012526    ALC46629.1    JXJN01019782    ADMH02002066    ETN59688.1    CM000070    EAL28454.1    CH479182    EDW34199.1    KQ976444    KYM86195.1    GGFM01003063    MBW23814.1    GL444789    EFN60573.1    CH902623    EDV30179.1    GGFJ01001665    MBW50806.1    OUUW01000008    SPP83867.1    NNAY01003944    OXU18608.1    CVRI01000036    CRK93008.1    GGMR01019133    MBY31752.1    ABLF02028277    GDIQ01075482    JAN19255.1    DS234995    EEB10090.1    GDIQ01148812    JAL02914.1    GEDC01010930    GEDC01005609    JAS26368.1    JAS31689.1    GFXV01001550    MBW13355.1    GDIQ01245930    JAK05795.1   

Proteomes

UP000218220    UP000283053    UP000005204    UP000053268    UP000053240    UP000007266    + More
UP000069940    UP000249989    UP000008820    UP000235965    UP000076502    UP000053105    UP000192223    UP000053825    UP000002320    UP000027135    UP000078541    UP000075884    UP000245037    UP000000304    UP000036403    UP000019118    UP000030742    UP000075880    UP000075901    UP000078542    UP000075809    UP000007755    UP000001070    UP000009192    UP000078492    UP000008711    UP000030765    UP000000803    UP000076408    UP000007798    UP000192221    UP000037069    UP000002282    UP000095301    UP000053097    UP000279307    UP000008792    UP000075881    UP000075920    UP000005205    UP000092443    UP000091820    UP000075885    UP000075883    UP000008237    UP000078200    UP000092445    UP000092444    UP000242457    UP000075840    UP000076407    UP000007062    UP000075886    UP000075882    UP000075903    UP000075902    UP000092553    UP000092460    UP000000673    UP000001819    UP000008744    UP000078540    UP000075900    UP000000311    UP000007801    UP000005203    UP000069272    UP000268350    UP000215335    UP000183832    UP000002358    UP000007819    UP000009046   

PRIDE

H9J7V5    Q9VE98   

Pfam

PF04003   Utp12        + More
PF00400   WD40
PF12894   ANAPC4_WD40
PF00018   SH3_1
PF14604   SH3_9

Interpro

IPR007148   SSU_processome_Utp12        + More
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR019775   WD40_repeat_CS       
IPR020472   G-protein_beta_WD-40_rep       
IPR036322   WD40_repeat_dom_sf       
IPR011044   Quino_amine_DH_bsu       
IPR024977   Apc4_WD40_dom       
IPR036028   SH3-like_dom_sf       
IPR001452   SH3_domain       
IPR011048   Haem_d1_sf       
IPR011041   Quinoprot_gluc/sorb_DH       
IPR018391   PQQ_beta_propeller_repeat       

SUPFAM

SSF50998   SSF50998        + More
SSF50978   SSF50978       
SSF50969   SSF50969       
SSF50044   SSF50044       
SSF51004   SSF51004       
SSF50952   SSF50952       

Gene 3D

2.130.10.10    

ProteinModelPortal

A0A2H1WY55   A0A2A4J943   A0A3S2LDN3   H9J7V5   A0A194QBA2   A0A194QSD0   + More
D6WGH6   A0A1Y1LSZ9   A0A182GKW0   Q17D07   A0A1S4F7D5   A0A2J7QW14   A0A154PL69   A0A0M8ZVG5   A0A1W4X783   A0A0L7QKA9   A0A1Q3EWJ3   B0WP86   A0A067R8M8   A0A195FTD8   A0A2J7QW03   A0A182NQZ1   A0A2P8XHD6   B4QUG6   A0A0J7KC35   N6U4H5   U4UIV3   A0A182J8U8   A0A182SWA2   A0A151IA59   A0A151WUZ6   F4X2C8   B4JZ20   B4KD74   A0A151J6D7   B3NZ78   A0A084W0J7   Q9VE98   A0A182YNC9   E9IQD8   B4NG81   A0A1W4U810   A0A0L0BWF5   B4PLA1   A0A1I8MHE7   A0A026VWH1   B4LZ99   A0A182JRG0   A0A336MMB4   A0A182VW73   A0A158NZ07   A0A1A9Y3Z2   A0A1A9WRW0   A0A182PR80   A0A182M2S4   E2BTJ4   A0A0C9R4Q1   A0A336KWX1   A0A034W1A6   A0A0A1WKZ9   A0A1A9VVU7   A0A1A9Z3Q0   A0A0K8V814   A0A1B0FLA4   A0A2A3E8V5   A0A2Y9D160   A0A182XP00   Q7PX03   A0A1Y9H9H7   A0A182L8D1   A0A1I8JVC0   A0A182TMX9   A0A0M3QXX4   A0A1B0BSN0   W5J8H6   Q296K3   B4GF14   A0A195BKX5   A0A2M3Z5P1   A0A182RFZ7   E2B149   B3MTP8   A0A088A342   A0A182FS98   A0A2M4BCN3   A0A3B0JNR7   A0A232EJV2   A0A1J1HY36   K7J604   A0A2S2PQK8   J9JP42   A0A0P6DVQ2   E0V9Q5   A0A0P5NHU9   A0A1B6DL56   A0A2H8TGX8   A0A0P5GJX1  

PDB

5OQL     E-value=1.95486e-13,     Score=182

KEGG

101738288    K14556 U3 small nucleolar RNA-associated protein 12 | (RefSeq) WD repeat-containing protein 3-like

PATHWAY

03008    Ribosome biogenesis in eukaryotes - Bombyx mori (domestic silkworm)

GO

GO:0032040   GO:0034388   GO:0003824   GO:0016905  

Length:

260

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.13614

Exp number, first 60 AAs:

0.11682

Total prob of N-in:

0.03338

outside

1  -  260

 

 

Pi

24.027176

Theta

159.064901

Tajima's D

0.119963

CLR

1.079416

CSRT

0.404079796010199

Interpretation

Uncertain