SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10218
Pre Gene Modal
BGIBMGA005595
Annotation
PREDICTED:_uncharacterized_protein_LOC101738425_isoform_X2_[Bombyx_mori]
Transcription factor
Location in the cell
Nuclear   Reliability : 4.699
 

Sequence

CDS
ATGAAGAATCTAGAGAGTCGGCAGGCGGCCGTTACACTCCTGCAAATAAAAAATTATGATCCATCTAAATATGTCGTCAAAACGGAGGAGGAACCACGTATAACTTTTAACAGTGTGCCAAGTTTACCGCCATCGGAGCGAGCAAGCGAGGTGATGCACTGCAACGCTGTCATCGATATTATAAATAAGGCTGTCGAGGTAGCGCAGCGGGAAAACGAAGAATCTCAAAAATTTCAAACGGATTATACGGGCGTAATCGACAGAACGCATGCGACGAACGTCACTGACGTCACGTACACCAGGGAATACACGGACGATCACTACAATGCATACGTCCCTAATCAAAACGCAACGAGTCCTTGCAGCCTCGACGATCGGGAGAACAGAGAGATAGACTTATCACATTACAGCTCCGGTAAGAACGAGATCGCAGAGAAAACAGAACAAACCGATCGCGACCAGTCACGTTCGTATTTTCCAAAAACAATGACCCACAATAAGGTGACGAGTTTTGTGGATGAATACAAACAACATATTTACGATCAATCTGTCAACAAAATGAAGTTAACCAAGGATACAGCTTCTGTTTACGAGGAATGCAGTCAGAGCAGCAGTGGTTCAGACCCTGACAGATTACAGATGGACATATCTCAAATGTCGCAGGACGACCCTGAAGAGACACAGTCGGCGCGCTCGACGCAGTCCTCCCCCCAACCCCCGCACGACGGCGAACAAGACAAAGAATCACTCTGGCAAGCGTTACACAGACAAAACGGTCGCAGCGGAGAAGCAACGCAGCTGTTGAGACGATTGATCAACAGCAAACATCTCGGTATGACGGTGTCCCCGCTGCGGGCGTCCACGTCGCCCACGCCCTCTGCCGTGCAGCCGCCGGTCAACGGATCTGTTTCGCCGAACGGGGAATGGCCAGCGTCAGGCCGTGGCTCAAACGTAGCGGGAACGGCGCGAAGGAAACAAAGTTTTCCCGCGCGTGCGCAACCAGTGACGCAAGACCCCTCAACCAACAACTCTACTTGGCAACAGGCTGCTTCAGATAATCAAGAGGGGACGGAGGTGGGGAGCGGGGTTGGGGGCGGTAACCGCGGCTCCGCTCGCGTGGAGTTGTCGTGCAGCAACTGCGGCACGCACACGACCACGATCTGGCGGCGGGACACGCGCGGCGAGATGGTGTGCAACGCGTGCGGGCTGTACTACAAGCTGCACGGCGTGCCGCGGCCCACCGCCATGCGGCGCGACACTATACACACGCGCCGCCGCCGTCCGCGACACGACTCCAAACATAGCAGGAACAAGTCTCGCCGCAGCGGTAGTGCGATGACGAACCCCGAGGTATCGGAGGGGGGTGCGGCGGGCGCGGAGGGCACGGAGGAGGCGGTGCTGGCCGCGCTGCGCCGACAGCTACAGCCGCACTTGCTGGCCGCGCTGCACGCGCACACCACGCGCCCCCACCGACATCAGGTTGGCACGAATGCTCAGGAATACGACGAGGCGCCGTTGAACTTAGTCGCGAGTCACGTGCCCGCCGCTGAGGAGACGCACTGA
Protein
MKNLESRQAAVTLLQIKNYDPSKYVVKTEEEPRITFNSVPSLPPSERASEVMHCNAVIDIINKAVEVAQRENEESQKFQTDYTGVIDRTHATNVTDVTYTREYTDDHYNAYVPNQNATSPCSLDDRENREIDLSHYSSGKNEIAEKTEQTDRDQSRSYFPKTMTHNKVTSFVDEYKQHIYDQSVNKMKLTKDTASVYEECSQSSSGSDPDRLQMDISQMSQDDPEETQSARSTQSSPQPPHDGEQDKESLWQALHRQNGRSGEATQLLRRLINSKHLGMTVSPLRASTSPTPSAVQPPVNGSVSPNGEWPASGRGSNVAGTARRKQSFPARAQPVTQDPSTNNSTWQQAASDNQEGTEVGSGVGGGNRGSARVELSCSNCGTHTTTIWRRDTRGEMVCNACGLYYKLHGVPRPTAMRRDTIHTRRRRPRHDSKHSRNKSRRSGSAMTNPEVSEGGAAGAEGTEEAVLAALRRQLQPHLLAALHAHTTRPHRHQVGTNAQEYDEAPLNLVASHVPAAEETH

Summary

Pfam
PF00320   GATA        + More
PF07776   zf-AD
Interpro
IPR000679   Znf_GATA        + More
IPR039355   Transcription_factor_GATA       
IPR013088   Znf_NHR/GATA       
IPR012934   Znf_AD       
Gene 3D
PDB
2M9W     E-value=3.672e-13,     Score=183

Ontologies

Topology

Subcellular location
Nucleus  
Length:
520
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00017
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00440
outside
1  -  520
 
 

Population Genetic Test Statistics

Pi
173.257551
Theta
160.563076
Tajima's D
0.392919
CLR
0.682195
CSRT
0.47647617619119
Interpretation
Uncertain
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