Gene

KWMTBOMO10217

Pre Gene Modal

BGIBMGA005599

Annotation

PREDICTED:_tsukushin-like_[Amyelois_transitella]

Location

Bomo_Chr17(-):5092364-5101647      View in EpiBrowser

Full name

Chloride channel protein      

Location in the cell

PlasmaMembrane   Reliability : 1.737

CDS

ATGTATTTTCCGGCTGTGTTAACGATAACAATCGTCCTTGTATCATCAAACCGAGCTGGGGCTGACGCGCCTAGTGCCCCTTGCGATATATCCGTAGAAGATACAAGTAACCTTACGCTGAACTGCTCACGACGAGACATCGTTAAGATACCTAATTGGCCGGAACAAATAAACAACATAAGCAAAGATGGTCACGTCCTAGTGACGTTTTTCAACAACAGCATTACAAATATAACGCAACTGAGTCCGATACCGGGGAACAGGATCGCGATCAGTTTCAAATCAAATCGCGTTATTGAAATCGAAGATGACGCTTTCAGGAACATCCCGCGATTGGTCTATTTGGATCTCAGCAATAATAAAATTTCAGGTCAAGTTCTCAGGAGTGAGATATTCCAAGGACCTTACGAAGATGGGATCTACCGTGAGATTGCTTTGGAGACACTCAATCTTGGTTATAATGAGATCCACTCATTGGACAGATATTTGTTTAAATATACGCCGAACTTAACGAGATTGTACTTAAACAATAACCCTATTGAAATACTTGACCACGTTTCAATACTCGCCATTTCTAGCGCCACGAATCTAGAGGTTCTCGACTTGTCCAAAACCGATATCGACAGTATACCATTGGACGCTTTTAGAGGATTGGTAAAATTACAACAGATCGATTTATCGGATAATCATTTTGTAACCGTACCTGAGAGTTTGAGCCTCGTAGGGAGCACCCTCAAATACCTCACGTTCAACAATAATCCCGTTGTGGAACTGAACGACGACAGTTTCGTAGGATTGTCAAATGTGATAGAATTAGAGGTAGGCGAAAACGATTATTTGGACGAAGTTAAACGGGGCACATTCACACCTTTGAAAAGCTTGAAGGTCCTGCATTTATGTCACAATCGCAACTTGCGATATATCAGTCACAATGCTTTTAGGGGACTAAAAGATAAGTGGACCTTGAAGGAGGTGTATCTAGATGACAATAATTTAAGTGAGTTGTCTCCTGATCTTATGCCATGGAGCAAACTGGATGTTCTCGGGATGACTGGTAATAGCTGGCTGTGTAATTGTGATCTGGTCAACATTGTTAATAAACAGGGTGCTGGTGATAAGTTCAAGTCTGATGAAGTCCCTTATTGTGCTGCTCCTATGAGATTGAGTGGAGAATACATTACAAATATTACTATCAACTTTTGTCCAATGTTAGACAAGACATTTTCACCTAGGAAGACTTTTAGTTTATCCGATTTGAGGCCAAAACATGTTCTATGGACAATCCTTGCCGTTGCAATGGTAGCTGCGTTTGGCATGATCTTGGGACTTCTTGTTAATGCAATCAAGAAAGTATATAAGACAAGGTTCCAAAGTCAACCAATTCACTATATTAATATTAACTCAGACAGCTCGTTTGCATGA

Protein

MYFPAVLTITIVLVSSNRAGADAPSAPCDISVEDTSNLTLNCSRRDIVKIPNWPEQINNISKDGHVLVTFFNNSITNITQLSPIPGNRIAISFKSNRVIEIEDDAFRNIPRLVYLDLSNNKISGQVLRSEIFQGPYEDGIYREIALETLNLGYNEIHSLDRYLFKYTPNLTRLYLNNNPIEILDHVSILAISSATNLEVLDLSKTDIDSIPLDAFRGLVKLQQIDLSDNHFVTVPESLSLVGSTLKYLTFNNNPVVELNDDSFVGLSNVIELEVGENDYLDEVKRGTFTPLKSLKVLHLCHNRNLRYISHNAFRGLKDKWTLKEVYLDDNNLSELSPDLMPWSKLDVLGMTGNSWLCNCDLVNIVNKQGAGDKFKSDEVPYCAAPMRLSGEYITNITINFCPMLDKTFSPRKTFSLSDLRPKHVLWTILAVAMVAAFGMILGLLVNAIKKVYKTRFQSQPIHYININSDSSFA

Similarity

Belongs to the chloride channel (TC 2.A.49) family.

Feature

chain  Chloride channel protein

Uniprot

A0A2A4JT20   A0A2H1WXZ8   A0A194QCJ6   A0A1E1W5M6   E3UKL3   A0A212FFF3   + More
A0A0L7LAF9   A0A1I8MDK9   A0A1L8D9W0   A0A1I8PC16   A0A1I8PC88   A0A1I8PC18   A0A1I8PC72   A0A1A9W9I4   A0A2J7Q157   W8APT0   A0A1L8EB73   U5ER79   A0A2J7Q168   A0A1B0GHB3   B4N9V7   A0A0K8VMV8   A0A0K8V9D2   A0A1Y1LS93   A0A0K8W4B8   A0A0L0BKJ2   T1PKF9   A0A0M3QXV9   A0A139WD84   A0A034V8X0   E9GRR5   A0A1B0D0U6   B4JEZ3   A0A1A9ZSS1   A0A1A9UTG6   A0A1A9YDQ1   A0A1B0G197   A0A1B0B320   B0WPC7   A0A1J1HLB3   N6T3Z7   B4K8L5   B4M3X1   A0A0P5B397   V5I8Y4   A0A2S2PYY5   A0A0P4Y3N7   A0A0P5GCU8   A0A0P5BH07   A0A0P5VDS4   A0A0P5A7N5   A0A0P5ZRW5   A0A0P5ZA07   A0A0P5P320   A0A0P5NK76   A0A0P5Y2P3   A0A0P5YUN6   A0A0P6AWK8   A0A336MK02   A0A0P5QN88   A0A0N8CIR4   A0A0P5C7P0   A0A1Q3FHH6   B3NZ34   A0A1W4U840   E0W140   A0A1S4F532   A0A1S4F556   Q17F19   B4I265   Q17F18   B4QU01   A0A0R1E546   B4PM01   Q299N9   A0A0P5QP51   A0A3B0KRV3   B4G5H4   A0A0P5W0V3   A0A0P5X2B6   A0A0P6HAR4   A0A182GWZ3   A0A023EWE0   A0A1D2MFR3   Q9VE49   B3LW74   A0A2S2P2H8   A0A2J7Q0W9  

Pubmed

26354079    22118469    26227816    25315136    24495485    17994087    + More
28004739    26108605    18362917    19820115    25348373    21292972    23537049    20566863    17510324    17550304    15632085    23185243    26483478    24945155    27289101    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356   

EMBL

NWSH01000679    PCG74838.1    ODYU01011923    SOQ57939.1    KQ459232    KPJ02705.1    + More
GDQN01008883    JAT82171.1    HM449887    ADO33022.1    AGBW02008828    OWR52457.1    JTDY01001986    KOB72395.1    GFDF01010826    JAV03258.1    NEVH01019960    PNF22315.1    GAMC01015755    GAMC01015754    JAB90800.1    GFDG01002944    JAV15855.1    GANO01003862    JAB56009.1    PNF22316.1    AJWK01004381    CH964232    EDW81712.1    GDHF01012121    GDHF01008239    JAI40193.1    JAI44075.1    GDHF01016921    GDHF01014523    JAI35393.1    JAI37791.1    GEZM01052547    JAV74446.1    GDHF01006410    JAI45904.1    JRES01001712    KNC20572.1    KA648565    AFP63194.1    CP012526    ALC46603.1    KQ971361    KYB25919.1    GAKP01020945    GAKP01020944    JAC38008.1    GL732560    EFX77868.1    AJVK01021673    AJVK01021674    CH916369    EDV93274.1    CCAG010001934    JXJN01007758    JXJN01007759    DS232022    EDS32302.1    CVRI01000006    CRK88204.1    APGK01044593    APGK01044594    APGK01044595    KB741027    KB632186    ENN74884.1    ERL89729.1    CH933806    EDW14414.1    CH940652    EDW59332.1    GDIP01194935    GDIQ01045617    JAJ28467.1    JAN49120.1    GALX01003880    JAB64586.1    GGMS01001552    MBY70755.1    GDIP01233144    JAI90257.1    GDIQ01242838    JAK08887.1    GDIP01199731    JAJ23671.1    GDIP01101283    JAM02432.1    GDIP01215274    JAJ08128.1    GDIP01225036    GDIP01101284    GDIP01053056    LRGB01003389    JAM50659.1    KZS02855.1    GDIP01047741    JAM55974.1    GDIQ01140784    JAL10942.1    GDIQ01148281    JAL03445.1    GDIP01064811    JAM38904.1    GDIP01054465    JAM49250.1    GDIP01023315    JAM80400.1    UFQS01001369    UFQT01001369    SSX10539.1    SSX30225.1    GDIQ01121782    JAL29944.1    GDIP01127735    JAL75979.1    GDIP01179237    JAJ44165.1    GFDL01008024    JAV27021.1    CH954181    EDV48576.1    DS235866    EEB19346.1    CH477277    EAT45114.1    CH480820    EDW54622.1    EAT45113.1    CM000364    EDX12424.1    CM000160    KRK02802.1    EDW95933.2    CM000070    EAL27664.2    KRT00216.1    KRT00217.1    GDIQ01118222    JAL33504.1    OUUW01000013    SPP87971.1    CH479179    EDW24840.1    GDIP01106889    JAL96825.1    GDIP01090432    JAM13283.1    GDIQ01022319    JAN72418.1    JXUM01094258    KQ564116    KXJ72754.1    GAPW01000854    JAC12744.1    LJIJ01001431    ODM91751.1    AE014297    AY052048    AAF55580.1    AAK93472.1    CH902617    EDV42652.1    GGMR01011040    MBY23659.1    PNF22240.1   

Proteomes

UP000218220    UP000053268    UP000007151    UP000037510    UP000095301    UP000095300    + More
UP000091820    UP000235965    UP000092461    UP000007798    UP000037069    UP000092553    UP000007266    UP000000305    UP000092462    UP000001070    UP000092445    UP000078200    UP000092443    UP000092444    UP000092460    UP000002320    UP000183832    UP000019118    UP000030742    UP000009192    UP000008792    UP000076858    UP000008711    UP000192221    UP000009046    UP000008820    UP000001292    UP000000304    UP000002282    UP000001819    UP000268350    UP000008744    UP000069940    UP000249989    UP000094527    UP000000803    UP000007801   

PRIDE

Q9VE49   

Pfam

PF13855   LRR_8        + More
PF13306   LRR_5
PF00571   CBS
PF00654   Voltage_CLC
PF12799   LRR_4
PF13516   LRR_6
PF02953   zf-Tim10_DDP
PF00560   LRR_1

Interpro

IPR032675   LRR_dom_sf        + More
IPR001611   Leu-rich_rpt       
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR026906   LRR_5       
IPR001807   Cl-channel_volt-gated       
IPR014743   Cl-channel_core       
IPR000644   CBS_dom       
IPR025875   Leu-rich_rpt_4       
IPR001020   PTS_HPr_His_P_site       
IPR000483   Cys-rich_flank_reg_C       
IPR035427   Tim10-like_dom_sf       
IPR004217   Tim10-like       

SUPFAM

SSF81340   SSF81340        + More
SSF144122   SSF144122       

Gene 3D

3.80.10.10     1.10.3080.10     1.10.287.810    

ProteinModelPortal

A0A2A4JT20   A0A2H1WXZ8   A0A194QCJ6   A0A1E1W5M6   E3UKL3   A0A212FFF3   + More
A0A0L7LAF9   A0A1I8MDK9   A0A1L8D9W0   A0A1I8PC16   A0A1I8PC88   A0A1I8PC18   A0A1I8PC72   A0A1A9W9I4   A0A2J7Q157   W8APT0   A0A1L8EB73   U5ER79   A0A2J7Q168   A0A1B0GHB3   B4N9V7   A0A0K8VMV8   A0A0K8V9D2   A0A1Y1LS93   A0A0K8W4B8   A0A0L0BKJ2   T1PKF9   A0A0M3QXV9   A0A139WD84   A0A034V8X0   E9GRR5   A0A1B0D0U6   B4JEZ3   A0A1A9ZSS1   A0A1A9UTG6   A0A1A9YDQ1   A0A1B0G197   A0A1B0B320   B0WPC7   A0A1J1HLB3   N6T3Z7   B4K8L5   B4M3X1   A0A0P5B397   V5I8Y4   A0A2S2PYY5   A0A0P4Y3N7   A0A0P5GCU8   A0A0P5BH07   A0A0P5VDS4   A0A0P5A7N5   A0A0P5ZRW5   A0A0P5ZA07   A0A0P5P320   A0A0P5NK76   A0A0P5Y2P3   A0A0P5YUN6   A0A0P6AWK8   A0A336MK02   A0A0P5QN88   A0A0N8CIR4   A0A0P5C7P0   A0A1Q3FHH6   B3NZ34   A0A1W4U840   E0W140   A0A1S4F532   A0A1S4F556   Q17F19   B4I265   Q17F18   B4QU01   A0A0R1E546   B4PM01   Q299N9   A0A0P5QP51   A0A3B0KRV3   B4G5H4   A0A0P5W0V3   A0A0P5X2B6   A0A0P6HAR4   A0A182GWZ3   A0A023EWE0   A0A1D2MFR3   Q9VE49   B3LW74   A0A2S2P2H8   A0A2J7Q0W9  

PDB

5MX1     E-value=2.23232e-17,     Score=219

KEGG

101737707    no KO assigned | (RefSeq) chondroadherin

GO

GO:0016021   GO:0005247   GO:0004180   GO:0005615   GO:0031012   GO:0046872   GO:0005739   GO:0015031   GO:0005515   GO:0006821   GO:0016020   GO:0005216   GO:0030942   GO:0006221   GO:0006402   GO:0003824  

Subcellular location

Membrane  

SignalP

Position:   1 - 21,         Likelihood:  0.987003

 

 

Length:

473

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.89777

Exp number, first 60 AAs:

0.01313

Total prob of N-in:

0.00110

outside

1  -  422

TMhelix

423  -  445

inside

446  -  473

 

 

Pi

192.078795

Theta

189.367322

Tajima's D

-1.159841

CLR

1.517767

CSRT

0.110444477776111

Interpretation

Uncertain