SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10213  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005602
Annotation
PREDICTED:_myrosinase_1-like_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.104
 

Sequence

CDS
ATGAAAGCTCTTGTGGTGTTTTTTTGTCTCAGTTTAGCAATGAGATACAGCACTTGCGTACCTAAGCAAAGGAGAACCTTTCCTGAAGACTTTATATTCGGCGTTTCAACAGCGTCTTATCAAATTGAAGGTGCCTGGAATTTAGACGGAAAAGGAGAAAACATTTGGGATTATCTCACCCACAATCATGTTGAAGCAATAGCAGATCTTAGTAATGGTGATATTGCTGCCGACTCATACCATAATTATTTAAGAGACGTGGAAATGTTGAGAGAATTGGGCGTTAATGCTTATCGTTTCTCGTTATCATGGTCGAGGATACTCCCAACCGGCTTTGCCAACTATATCAATAAAGCGGCAATCGATTACTACAATAATTTGATAAATGAACTTCTCAAATATAACATTAAACCGGTGGTCACTTTGTATCATTGGGACTTACCACAGAAACTTCAAGAATTAGGAGGTTTCGGAAATCCATTGATCGCGGATTGGTTCGAAGATTATGCCCGCGTAGCCTTCCAATATTTCGGCGACAGAGTAAAATTTTGGATTACTATTAATGAGCCGAAAGAGATATGCCTGGACGGATATGGAAGTACGGCTAAAGCCCCTATGTTAAATGAATCAGGGATCGGAGAGTACATTTGCGCTAAGAATCTGATCATAGCACACGCCAAAGCCTATCATGCGTACAGTAATGACTTTAAAGCCACGCAGGGAGGAGTATGTGGCATAACGTTTAGTGTCAGTTCTGCTCAACCACTTACGAGCTCTGAAGAAGATGCAATTGCACTTGAAATACACAACCAGGGTGAATGGGCTATATATTCCGATCCGATTTATTCAAAGGAAGGTGGTTTTCCCAAGGAGTTTTCTGAACGAATTGCATTAAAAAGCTTGCAGCAAGGGTACCCTAGATCTCGATTACCTGCGTACACCGAAGAAGAAAAAGACTTTGTTCGCGGTACAAGCGATTTCTTTGGTGTGAATCATTACAGCGGCTCTCTCGTGTCTGCAGTTACTTCTAACAATTTTGTAGTCCCGTCATTCAATGATGATGTAGGTGTCAGTTATTATACGCCCGAGGAATGGCCTCGATCAGTGTCTAGTTGGCTTACGCAAATGCCGAATAGCTTGAATATAACTCTTACGCGTTTGAGGGACAGATATGACAATCCTGAAATTTATATTACTGAGAACGGATGGTCGACGTATCAAGGACTAAATGACGACACTAGAGTCAATTATATGAGAGCCGCTTGGGAGAGTGCGTTGGATGCGCTTGATGCCGGAATTAATTTGAAGGGGTACATGGCCTGGAGCCTAATGGACAATTTTGAATGGAGGGAAGGATATAGTGAAAGGTTCGGTTTGTATGAAGTGGATTTCGAAGATCCGGCCCGCACTCGTACTCCAAGAAAATCCGCTTTTGTCTACAAACAACTGATTAGTACAAGAGAAGTTGATCACGACTATGATCCTGACTATCAGTCTATTATGACCATCAACGACTCGTGA
Protein
MKALVVFFCLSLAMRYSTCVPKQRRTFPEDFIFGVSTASYQIEGAWNLDGKGENIWDYLTHNHVEAIADLSNGDIAADSYHNYLRDVEMLRELGVNAYRFSLSWSRILPTGFANYINKAAIDYYNNLINELLKYNIKPVVTLYHWDLPQKLQELGGFGNPLIADWFEDYARVAFQYFGDRVKFWITINEPKEICLDGYGSTAKAPMLNESGIGEYICAKNLIIAHAKAYHAYSNDFKATQGGVCGITFSVSSAQPLTSSEEDAIALEIHNQGEWAIYSDPIYSKEGGFPKEFSERIALKSLQQGYPRSRLPAYTEEEKDFVRGTSDFFGVNHYSGSLVSAVTSNNFVVPSFNDDVGVSYYTPEEWPRSVSSWLTQMPNSLNITLTRLRDRYDNPEIYITENGWSTYQGLNDDTRVNYMRAAWESALDALDAGINLKGYMAWSLMDNFEWREGYSERFGLYEVDFEDPARTRTPRKSAFVYKQLISTREVDHDYDPDYQSIMTINDS

Summary

Similarity
Belongs to the glycosyl hydrolase 1 family.
Belongs to the histone H3 family.
EMBL
BABH01020023    BABH01020024    KQ459875    KPJ19634.1    KQ459601    KPI93701.1    + More
NWSH01000679    PCG74847.1    BABH01016738    ODYU01004903    SOQ45257.1    ODYU01006201    SOQ47841.1    NWSH01000883    PCG73725.1    KZ149936    PZC77129.1    PCG73728.1    ODYU01011923    SOQ57942.1    SOQ45256.1    PCG73727.1    PCG73724.1    PZC77128.1    KZ150738    PZC70347.1    AF052729    AAC06038.1    KPI93700.1    PCG73726.1    AGBW02010585    OWR48225.1    SOQ45255.1    ODYU01006202    SOQ47842.1    JTDY01001063    KOB74989.1    PZC77127.1    LT635663    SGZ49382.1    JN033713    AEW46866.1    KQ460779    KPJ12243.1    KQ459598    KPI94627.1    JN033714    AEW46867.1    AGBW02013459    OWR43376.1    ODYU01001971    SOQ38904.1    KPJ19635.1    KPJ12247.1    KPJ12242.1    RSAL01000077    RVE48784.1    KPI94624.1    NWSH01000819    PCG74065.1    KPJ12248.1    KPJ12246.1    KPI94630.1    KPI94632.1    KPI94629.1    KPJ12245.1    JN033728    AEW46881.1    AGBW02007954    OWR54377.1    KPI94628.1    OWR48226.1    AGBW02008847    OWR52397.1    OWR52398.1    AGBW02011758    OWR46180.1    AGBW02009344    OWR51063.1    KPI94633.1    RSAL01000019    RVE52748.1    BABH01035726    BABH01005438    JN033718    AEW46871.1    JTDY01001400    KOB73970.1    KPJ12249.1    AAAB01008960    EAL40075.2    APCN01002262    BABH01005437    DS232013    EDS31873.1    KPI94631.1    OWR48224.1    AXCN02000455    KPJ12244.1    JXUM01031354    KQ560919    KXJ80350.1    JXUM01040976    KQ561266    KXJ79155.1    GGFM01006254    MBW27005.1    JXUM01031352    KXJ80348.1    OWR46178.1    CH477568    EAT38910.1    JTDY01005139    KOB67338.1    CH478582    EAT32750.1    ADMH02000892    ETN64738.1    KZ150146    PZC72895.1    GFDL01004884    JAV30161.1    ATLV01010792    KE524614    KFB35691.1    CVRI01000047    CRK98477.1    GGFJ01004382    MBW53523.1    EAA11668.3    GFDF01005304    JAV08780.1    EAT38908.1    GFDF01005305    JAV08779.1    GFDF01005306    JAV08778.1    JXJN01024604    JXJN01024605    JXJN01024606    EAU76599.1   
Pfam
PF00232   Glyco_hydro_1        + More
PF00335   Tetraspanin
PF02953   zf-Tim10_DDP
PF00125   Histone
Interpro
IPR033132   Glyco_hydro_1_N_CS        + More
IPR017853   Glycoside_hydrolase_SF       
IPR001360   Glyco_hydro_1       
IPR018499   Tetraspanin/Peripherin       
IPR018120   Glyco_hydro_1_AS       
IPR035427   Tim10-like_dom_sf       
IPR004217   Tim10-like       
IPR000164   Histone_H3/CENP-A       
IPR007125   Histone_H2A/H2B/H3       
IPR009072   Histone-fold       
SUPFAM
SSF51445   SSF51445        + More
SSF144122   SSF144122       
SSF47113   SSF47113       
Gene 3D
PDB
5CG0     E-value=0,     Score=1702

Ontologies

Topology

Subcellular location
Chromosome  
Nucleus  
SignalP
Position:   1 - 19,         Likelihood:  0.975439
 
 
Length:
506
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01608
Exp number, first 60 AAs:
0.01347
Total prob of N-in:
0.00128
outside
1  -  506
 
 

Population Genetic Test Statistics

Pi
265.040844
Theta
212.758079
Tajima's D
0.605856
CLR
0.049244
CSRT
0.538973051347433
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
Peptides ×
Source Sequence Identity Evalue
28556443 NLIIAHAK 100.00 2e-06
28556443 AAWESALDALDAGINLK 100.00 2e-06
28556443 INELLK 100.00 1e-04
28556443 LPAYTEEEKDFVR 100.00 1e-04
28556443 AAWESALDALDAGINLK 100.00 0.008
28556443 MPSWFDLR 100.00 0.008
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