Gene

KWMTBOMO10191  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005588

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_E2/E3_hybrid_ubiquitin-protein_ligase_UBE2O_[Bombyx_mori]

Location

Bomo_Chr17(+):4176423-4181295      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.271 Mitochondrial   Reliability : 1.171

CDS

ATGGAAGCGGAAGTGGAGGGCGCCCCTGTCTCCGGGGGCGAGGGGTTTGCGCTGCTGGAGCTCGCGCCGGCGGCGCACCGCTTCCGCCTCTCCATACTGCAGCCGTCGGACCCGCGCTCCTTCCACTCGGCCGTCAAACGAGAGATCAAATTGCTCAGGAGTGATCTACCACCAGGCGTCTGGGTCCGCGGCTACGAGAACCGCATCGATCTGCTGTCGGTGATGATAGCGGGCCCCGCGAACACGCCGTACGAGGACGGGCTGTTCGTGTTCGACGTGCAGCTCGGCGGGGAGTACCCGCGCGCGCCGCCGCTCTGCCACTACCACTCGTACTGCACGGACCGACTCAACCCGAACCTGTACGAGGACGGGAAGGTTTGTGTGTCTCTCCTGGGCACGTGGTCTGGGCGCGGTGTCGAGGTGTGGGGCAAAGACAGCTCACTCCTACAGGTCATAGTGTCTCTGCAGGGACTGATCCTCAATGCCGAGCCTTATTTCAACGAGGCTGGATATGAGAAACAAAAAGGTACCCAACAAGGCAAGGAGAACTCGCGCATGTACAACGAGATGGTGCTGTTAAAACTCGTTCAATCGATGACGAAGATGGTCCTTAACCCGCCGGAACCGTTCCGCGACGAGATCATGCAGCACATGCGCACGCACGCCGCCGCGCTCTGTGCGCGCCTCGACGGACTCGTGGCGCTCTCCGGGGAGGCGCCCCTCCCCCGCCCCGTCACGCCCCCGGACTACCCCCTGGTGCCGGCGTCGCGCGGCTTCTGCCTCACGCTCAGGTCGTCCCTCGAAGCGTTCCGAGCGGCGCTGCGTAGGAACGACATCACTCTCCCCCCGGAGGATTTATAG

Protein

MEAEVEGAPVSGGEGFALLELAPAAHRFRLSILQPSDPRSFHSAVKREIKLLRSDLPPGVWVRGYENRIDLLSVMIAGPANTPYEDGLFVFDVQLGGEYPRAPPLCHYHSYCTDRLNPNLYEDGKVCVSLLGTWSGRGVEVWGKDSSLLQVIVSLQGLILNAEPYFNEAGYEKQKGTQQGKENSRMYNEMVLLKLVQSMTKMVLNPPEPFRDEIMQHMRTHAAALCARLDGLVALSGEAPLPRPVTPPDYPLVPASRGFCLTLRSSLEAFRAALRRNDITLPPEDL

Uniprot

H9J7U6   A0A2Z5UMI9   A0A2H1WL89   A0A212F1T2   S4PD68   A0A194QRY6   + More
A0A2A4JGP9   A0A2A4JHK1   A0A194QB72   A0A1B6F3L3   A0A1B6HB59   A0A3R7SYG0   A0A0A9Z4M3   A0A182S688   A0A146KZ01   A0A088A5L9   A0A2A3E541   A0A0M8ZST2   A0A3R7MFN5   A0A310SVJ8   A0A0J7K8A6   Q177P2   A0A1S4FCP9   F4WGT7   E2A6R6   A0A0P4WW47   A0A158NFG9   A0A195BCH6   A0A151JUU8   E9ITG6   A0A2J7QWP0   A0A151WPH2   A0A232EP30   A0A0L7R2N9   A0A195D6X5   K7IZ35   A0A154PRB3   A0A023EYQ1   A0A026WKB5   A0A0P4WP78   A0A195DAM2   A0A0V0G6I3   A0A224X9X2   A0A069DZS3   A0A171ADL9   A0A1B6CR24   E2C4G2   A0A0K8VG06   A0A336MDJ5   A0A0P4VTQ4   A0A1Q3FIR0   A0A1Q3FIR6   A0A336LYQ9   A0A182XVP0   A0A182P300   B0W911   A0A182HEW6   T1P7J6   W8BCA6   E0VN24   A0A1J1HL30   A0A182IVH4   A0A034VER4   A0A0K8ULW2   A0A182LUL4   A0A2M4CSB7   A0A084W918   A0A1A9UVH6   A0A1B0FQR3   A0A182JWR4   A0A1A9ZZ93   A0A182W0D7   A0A182N6M8   T1JBM6   T1HCU1   A0A182F6H2   A0A182Q3T4   A0A2M4B9Y1   A0A1A9WYQ4   A0A2M4B9Q3   A0A1A9YT37   A0A1I8PX28   A0A224Z9G1   A0A131YLB0   A0A224ZBM3   A0A131YJS8   A0A182UZU2   Q7QBM6   A0A182TRJ6   A0A1B0B3E5   A0A182HIZ2   A0A182X8D8   A0A182LC45   A0A2P8YLV3   A0A087SWE1   A0A1I8NFF5   A0A2R5LIX0   A0A067QTW6   L7LVL6   A0A131XKB5  

Pubmed

19121390    22118469    23622113    26354079    25401762    26823975    + More
17510324    21719571    20798317    21347285    21282665    28648823    20075255    25474469    24508170    30249741    26334808    27129103    25244985    26483478    24495485    20566863    25348373    24438588    28797301    26830274    12364791    14747013    17210077    20966253    29403074    25315136    24845553    25576852    28049606   

EMBL

BABH01020117    BABH01020118    AP017548    BBB06957.1    ODYU01009425    SOQ53843.1    + More
AGBW02010829    OWR47674.1    GAIX01005072    JAA87488.1    KQ461155    KPJ08252.1    NWSH01001429    PCG71255.1    PCG71256.1    KQ459232    KPJ02679.1    GECZ01024893    GECZ01016377    JAS44876.1    JAS53392.1    GECU01035770    JAS71936.1    QCYY01000991    ROT81312.1    GBHO01023831    GBHO01023829    GBHO01023828    GBHO01023826    GBHO01023825    GBHO01023824    GBHO01006853    GBHO01006849    GBRD01014963    GBRD01014962    JAG19773.1    JAG19775.1    JAG19776.1    JAG19778.1    JAG19779.1    JAG19780.1    JAG36751.1    JAG36755.1    JAG50863.1    GDHC01017231    JAQ01398.1    KZ288400    PBC26289.1    KQ435912    KOX68893.1    QCYY01000992    ROT81303.1    KQ760116    OAD61943.1    LBMM01012045    KMQ86451.1    CH477373    EAT42376.1    GL888147    EGI66556.1    GL437197    EFN70860.1    GDRN01055014    JAI66025.1    ADTU01014480    KQ976514    KYM82266.1    KQ981724    KYN37239.1    GL765555    EFZ16116.1    NEVH01009422    PNF33000.1    KQ982877    KYQ49701.1    NNAY01003020    OXU20104.1    KQ414665    KOC65142.1    KQ976750    KYN08640.1    KQ435056    KZC14287.1    GBBI01004419    JAC14293.1    KK107167    QOIP01000010    EZA56492.1    RLU17790.1    GDRN01055013    JAI66026.1    KQ981063    KYN09960.1    GECL01002768    JAP03356.1    GFTR01008722    JAW07704.1    GBGD01000140    JAC88749.1    GEMB01001195    JAS01953.1    GEDC01021378    GEDC01004218    JAS15920.1    JAS33080.1    GL452471    EFN77146.1    GDHF01014527    JAI37787.1    UFQS01001009    UFQT01001009    SSX08556.1    SSX28472.1    GDKW01002309    JAI54286.1    GFDL01007578    JAV27467.1    GFDL01007586    JAV27459.1    UFQT01000234    SSX22151.1    DS231861    EDS39449.1    JXUM01132778    KQ567891    KXJ69233.1    KA644439    AFP59068.1    GAMC01015764    JAB90791.1    DS235332    EEB14790.1    CVRI01000010    CRK88767.1    GAKP01018707    JAC40245.1    GDHF01024615    JAI27699.1    AXCM01000558    GGFL01004025    MBW68203.1    ATLV01021572    KE525320    KFB46712.1    CCAG010018120    JH432011    ACPB03000177    AXCN02000299    GGFJ01000660    MBW49801.1    GGFJ01000615    MBW49756.1    GFPF01013135    MAA24281.1    GEDV01009856    JAP78701.1    GFPF01013136    MAA24282.1    GEDV01009857    JAP78700.1    AAAB01008879    EAA08452.5    EGK96947.1    JXJN01007813    APCN01002105    PYGN01000503    PSN45221.1    KK112250    KFM57180.1    GGLE01005249    MBY09375.1    KK853278    KDR09067.1    GACK01010091    JAA54943.1    GEFH01001052    JAP67529.1   

Proteomes

UP000005204    UP000007151    UP000053240    UP000218220    UP000053268    UP000283509    + More
UP000075901    UP000005203    UP000242457    UP000053105    UP000036403    UP000008820    UP000007755    UP000000311    UP000005205    UP000078540    UP000078541    UP000235965    UP000075809    UP000215335    UP000053825    UP000078542    UP000002358    UP000076502    UP000053097    UP000279307    UP000078492    UP000008237    UP000076408    UP000075885    UP000002320    UP000069940    UP000249989    UP000009046    UP000183832    UP000075880    UP000075883    UP000030765    UP000078200    UP000092444    UP000075881    UP000092445    UP000075920    UP000075884    UP000015103    UP000069272    UP000075886    UP000091820    UP000092443    UP000095300    UP000075903    UP000007062    UP000075902    UP000092460    UP000075840    UP000076407    UP000075882    UP000245037    UP000054359    UP000095301    UP000027135   

PRIDE

H9J7U6   

Pfam

PF00179   UQ_con        + More
PF00271   Helicase_C
PF00270   DEAD
PF01565   FAD_binding_4
PF02913   FAD-oxidase_C

Interpro

IPR016135   UBQ-conjugating_enzyme/RWD        + More
IPR000608   UBQ-conjugat_E2       
IPR014001   Helicase_ATP-bd       
IPR001650   Helicase_C       
IPR027417   P-loop_NTPase       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR000629   RNA-helicase_DEAD-box_CS       
IPR036318   FAD-bd_PCMH-like_sf       
IPR004113   FAD-linked_oxidase_C       
IPR016166   FAD-bd_PCMH       
IPR016164   FAD-linked_Oxase-like_C       
IPR016171   Vanillyl_alc_oxidase_C-sub2       
IPR006094   Oxid_FAD_bind_N       

SUPFAM

SSF54495   SSF54495        + More
SSF52540   SSF52540       
SSF55103   SSF55103       
SSF56176   SSF56176       

Gene 3D

3.10.110.10     1.10.45.10    

CDD

cd00195  UBCc
cd00079  HELICc

ProteinModelPortal

H9J7U6   A0A2Z5UMI9   A0A2H1WL89   A0A212F1T2   S4PD68   A0A194QRY6   + More
A0A2A4JGP9   A0A2A4JHK1   A0A194QB72   A0A1B6F3L3   A0A1B6HB59   A0A3R7SYG0   A0A0A9Z4M3   A0A182S688   A0A146KZ01   A0A088A5L9   A0A2A3E541   A0A0M8ZST2   A0A3R7MFN5   A0A310SVJ8   A0A0J7K8A6   Q177P2   A0A1S4FCP9   F4WGT7   E2A6R6   A0A0P4WW47   A0A158NFG9   A0A195BCH6   A0A151JUU8   E9ITG6   A0A2J7QWP0   A0A151WPH2   A0A232EP30   A0A0L7R2N9   A0A195D6X5   K7IZ35   A0A154PRB3   A0A023EYQ1   A0A026WKB5   A0A0P4WP78   A0A195DAM2   A0A0V0G6I3   A0A224X9X2   A0A069DZS3   A0A171ADL9   A0A1B6CR24   E2C4G2   A0A0K8VG06   A0A336MDJ5   A0A0P4VTQ4   A0A1Q3FIR0   A0A1Q3FIR6   A0A336LYQ9   A0A182XVP0   A0A182P300   B0W911   A0A182HEW6   T1P7J6   W8BCA6   E0VN24   A0A1J1HL30   A0A182IVH4   A0A034VER4   A0A0K8ULW2   A0A182LUL4   A0A2M4CSB7   A0A084W918   A0A1A9UVH6   A0A1B0FQR3   A0A182JWR4   A0A1A9ZZ93   A0A182W0D7   A0A182N6M8   T1JBM6   T1HCU1   A0A182F6H2   A0A182Q3T4   A0A2M4B9Y1   A0A1A9WYQ4   A0A2M4B9Q3   A0A1A9YT37   A0A1I8PX28   A0A224Z9G1   A0A131YLB0   A0A224ZBM3   A0A131YJS8   A0A182UZU2   Q7QBM6   A0A182TRJ6   A0A1B0B3E5   A0A182HIZ2   A0A182X8D8   A0A182LC45   A0A2P8YLV3   A0A087SWE1   A0A1I8NFF5   A0A2R5LIX0   A0A067QTW6   L7LVL6   A0A131XKB5  

PDB

3CEG     E-value=3.66729e-36,     Score=378

KEGG

101740080    K10581 ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24] | (RefSeq) E2/E3 hybrid ubiquitin-protein lig

PATHWAY

04120    Ubiquitin mediated proteolysis - Bombyx mori (domestic silkworm)

GO

GO:0016874   GO:0005524   GO:0003676   GO:0071949   GO:0016021   GO:0016491   GO:0033503   GO:0006281   GO:0000209   GO:0000790   GO:0061631   GO:0043161  

Length:

286

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01926

Exp number, first 60 AAs:

0.01681

Total prob of N-in:

0.01089

outside

1  -  286

 

 

Pi

170.052937

Theta

131.062169

Tajima's D

0.862853

CLR

0

CSRT

0.619119044047798

Interpretation

Uncertain