Silkworm Genome Informatics Database

Gene

KWMTBOMO10190 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005587

Annotation

PREDICTED:_LOW_QUALITY_PROTEIN:_E2/E3_hybrid_ubiquitin-protein_ligase_UBE2O_[Bombyx_mori]

Location

Bomo_Chr17(+):4168463-4174477 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.95

CDS

ATGGCAGGTCTACTGGAGCGGGTGCGCGAGCGCGGGGCGAGCACGCCGCGTGCGGGCGAGCGGCGCGTGCACGAGCAGCTGGCGCGCCTGTTCACGCCCAACGAGCCGGGCGGCGACCTGGCCGCCACCGACATGCTGGTCGACGAACACATGGAGAAGCCGCCCACGAGGACCCTCATCACGTCCAATGTTACCGTCGAACCTATGGAGGTCGAAGGAAACACTCCAAAGACACATACGAATTCAACGTCGGATTCAACGGTGCATGCTTCAGGGTCCAACACCAGCGCGCAAGTCACTCAGGAGGGCGCTATTATTGAAGATCCGTCTACGGAGCAAAGCGACTTGGACGGCACGACCCGCAACGTTTGCTACCGACTGTGCTCCCTCATACATTCGCAACTGGTGAAGGCTCACGCGGAAGTCAGCCGGAGAAGGCCGCAAGAGTTGGCCGGATTCCTTAACAACTTAATGAAAAAGAGAAACGTGTCTGAGGAGAACTTACTCTACCACTTTTCAGTTCAGTACGGTGCTCTGGTCGTGAGCATGGGTGAAGACGAGAAGGCCGAGACGAAACCAGCCGAAGGTGAAGCCAAGGATGCCACAACCGGTACTGCGGAAACCGACGAAGTCAAGAGTAAGTTTTTGATGTTAAGAAAAAGAGCGTACAATCGGTTCGCGGGGCAGGCGCAAGCAATGTATTAA

Protein

MAGLLERVRERGASTPRAGERRVHEQLARLFTPNEPGGDLAATDMLVDEHMEKPPTRTLITSNVTVEPMEVEGNTPKTHTNSTSDSTVHASGSNTSAQVTQEGAIIEDPSTEQSDLDGTTRNVCYRLCSLIHSQLVKAHAEVSRRRPQELAGFLNNLMKKRNVSEENLLYHFSVQYGALVVSMGEDEKAETKPAEGEAKDATTGTAETDEVKSKFLMLRKRAYNRFAGQAQAMY

Uniprot

H9J7U5 A0A2A4JHK1 A0A2A4JGP9 A0A194QRY6 A0A194QB72 A0A212F1T2 + More
A0A2H1WS02 A0A0V0G6I3 A0A069DZS3 A0A224X9X2 A0A0P4VTQ4 A0A023EYQ1 A0A0C9RZB6

Pubmed

19121390 26354079 22118469 26334808 27129103 25474469 + More

EMBL

BABH01020118 BABH01020119 BABH01020120 NWSH01001429 PCG71256.1 PCG71255.1 + More
KQ461155 KPJ08252.1 KQ459232 KPJ02679.1 AGBW02010829 OWR47674.1 ODYU01010223 SOQ55194.1 GECL01002768 JAP03356.1 GBGD01000140 JAC88749.1 GFTR01008722 JAW07704.1 GDKW01002309 JAI54286.1 GBBI01004419 JAC14293.1 GBYB01013461 GBYB01013462 JAG83228.1 JAG83229.1

Proteomes

UP000005204 UP000218220 UP000053240 UP000053268 UP000007151

PRIDE

H9J7U5

Pfam

PF00179 UQ_con

Interpro

IPR000608 UBQ-conjugat_E2 + More
IPR016135 UBQ-conjugating_enzyme/RWD

SUPFAM

SSF54495 SSF54495

Gene 3D

3.10.110.10

CDD

cd00195 UBCc

ProteinModelPortal

H9J7U5 A0A2A4JHK1 A0A2A4JGP9 A0A194QRY6 A0A194QB72 A0A212F1T2 + More
A0A2H1WS02 A0A0V0G6I3 A0A069DZS3 A0A224X9X2 A0A0P4VTQ4 A0A023EYQ1 A0A0C9RZB6

KEGG

101740080 K10581 ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24] | (RefSeq) E2/E3 hybrid ubiquitin-protein lig

GO

Length:

234

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01199

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04410

outside

1 - 234

Pi

258.747469

Theta

23.997123

Tajima's D

0.85077

CLR

0.223477

CSRT

0.624068796560172

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics