Gene

KWMTBOMO10186

Pre Gene Modal

BGIBMGA005586

Annotation

nuclear_distribution_protein_NUDC_[Biston_betularia]

Location

Bomo_Chr17(+):4132943-4135437      View in EpiBrowser

Full name

NudC domain-containing protein 3      

Location in the cell

Cytoplasmic   Reliability : 1.557 Nuclear   Reliability : 2.113

CDS

ATGTCATCCGCGAACGAATTTAGCCAATACGACGATATTTTATCAAATATTTTAGTTAATGAAAAATCTATCTTGGGTTTTCTATCGGCAATTTTTAATTTTTTAGCAAGACGCACCGATTTCTATTATGTACCGGATGGCCAGTACGAAAACATAGGTTTTCCGCCGGGAGTTGCTGAAGAACTGGTTATTAAAGTTCTCCGGACATGCGACCCCAAAAACGTGAAGGAGCCGCACAAGCACACTGATTTAAACAACGAGATCATGTGCTCGACAGTTGCTCAAGAGGTCGAAGTAATTGCTAGTGAAGATACTTCGGCGGACCTCGAGGCAAGTGGAGAACAAGATGTCCTAACATCTGAACATCAAGTAAGGGAAGCAGTTTCGAGTCAGCCTGAAGAGTACAAGCCTCCAGTAATACCAATACAGAAGAGAAGCGAGTGCTACAATGGAGCGGACAGAGAAAATTACTCGTGGGCGCAAACTCTAATGGATCTTGATGTAACTGTAAAACTTCCACCAGATATAAAATCTTCAAAAGACCTAAAAGTTGCTATAAATCCTGGAGATATTTATGTATGTCGACAGAACGGTGATGTAATTGTTAAGGACTCTCTGCTGTTCAAGATTAAGACCAGTGATAGTTTCTGGAGTCTTAGCGAGGGACGATTGTTGATGCATCTGGAAAAAGTCCGCGAGCAATGGTGGTCAAAGCTTTTGATTGGCGAAGAAGACATTGATTTATCAAAGATAGACTGCTCAAGGCCCTTACATGAACTCCCAGATGATCACATTGATAAGATAAAAGAGCTTCAATGGAACCAAGAACAGAAAATGAAAGGCCTACCTACTAGTGATGAAATAAGAAACATTGAGATATTGAAGAAAGCTTGGAATGCTGATGGTTCTCCATTTAAAGGTCAAAAGTTTGACCCTAGTATTCTTAGCCAATCATTTACTCCTTTTGGAAATAATAAATAA

Protein

MSSANEFSQYDDILSNILVNEKSILGFLSAIFNFLARRTDFYYVPDGQYENIGFPPGVAEELVIKVLRTCDPKNVKEPHKHTDLNNEIMCSTVAQEVEVIASEDTSADLEASGEQDVLTSEHQVREAVSSQPEEYKPPVIPIQKRSECYNGADRENYSWAQTLMDLDVTVKLPPDIKSSKDLKVAINPGDIYVCRQNGDVIVKDSLLFKIKTSDSFWSLSEGRLLMHLEKVREQWWSKLLIGEEDIDLSKIDCSRPLHELPDDHIDKIKELQWNQEQKMKGLPTSDEIRNIEILKKAWNADGSPFKGQKFDPSILSQSFTPFGNNK

Keywords

Alternative splicing   Complete proteome   Phosphoprotein   Reference proteome   3D-structure   Polymorphism  

Feature

chain  NudC domain-containing protein 3
splice variant  In isoform 4.
sequence variant  In dbSNP:rs307007.

Uniprot

H9J7U4   E3UKM0   A0A212EPJ8   A0A194QCG5   A0A2A4JZB5   A0A3S2M059   + More
A0A2H1W471   A0A0L7KRH3   A0A194QRZ1   K7IZ71   A0A232F1T3   A0A2A3EFY5   A0A088ATY0   A0A0L7QQ55   A0A154P906   V4BDP8   A0A1S8XAN8   A0A0M9A830   A0A074ZZK1   W6UZS0   A0A151WX58   A0A0K8TRF0   A0A068Y5P5   A0A068WPE9   A0A0R3WHY3   A0A0R3UDV6   A0A195CV49   A0A0L8FHW4   E9J3J2   B0FTY3   Q8R1N4   N6TBQ0   A0A3M7PMB8   A0A026WNB4   A0A3L8DDL2   A0A0X3QEA5   A0A2Y9PUB0   T2MA20   L8Y9N9   A0A158NTR0   A0A151JNI1   A0A210QVG8   A0A195BMI7   A0A1B6CE11   F4WJ06   E2B5S2   A0A340WHU0   G3HMA9   A0A2P8XQ31   A0A250XZ68   Q5DAE2   A0A341B9P2   C1LHS0   E2ARC8   A0A2B4SST4   A0A2Y9FJJ0   A0A2G8KHF5   A0A3P9APG1   H9G5V3   A0A3Q2XHD4   B0FTY2   A0A0J7KNT2   G3QG33   H2QUI4   Q8IVD9  

Pubmed

19121390    22118469    26354079    26227816    20075255    28648823    + More
23254933    24013640    26369729    23485966    21282665    12040188    14621295    16141072    19468303    15489334    21183079    23537049    30375419    24508170    30249741    24065732    23385571    21347285    28812685    21719571    20798317    21804562    23929341    29403074    28087693    16617374    29023486    25069045    21881562    16754861    22398555    16136131    12853948    10470851    14702039    17525332    19690332    20068231    21269460    23186163   

EMBL

BABH01020120    HM449894    ADO33029.1    AGBW02013457    OWR43381.1    KQ459232    + More
KPJ02675.1    NWSH01000358    PCG77028.1    RSAL01000090    RVE48060.1    ODYU01006091    SOQ47632.1    JTDY01006876    KOB65624.1    KQ461155    KPJ08257.1    NNAY01001222    OXU24691.1    KZ288255    PBC30665.1    KQ414806    KOC60621.1    KQ434846    KZC08332.1    KB199905    ESP03847.1    KV891488    OON23790.1    KQ435724    KOX78386.1    KL596633    KER32511.1    APAU02000004    EUB64042.1    KQ982673    KYQ52428.1    GDAI01000654    JAI16949.1    LN902843    CDS37605.1    LK028579    CDS19548.1    UYWX01000011    VDM16023.1    UXSR01005180    VDD79105.1    KQ977279    KYN04044.1    KQ431294    KOF63268.1    GL768066    EFZ12596.1    EU350933    CH466574    ABY60410.1    EDL40573.1    AK129276    AK046219    AK049739    AK050476    AK159391    AK159458    AK169797    AK170329    AK171224    AL607152    AL611926    BC024322    BC037090    BC057603    APGK01036304    KB740939    ENN77709.1    REGN01010007    RMZ99880.1    KK107148    EZA57463.1    QOIP01000009    RLU18411.1    GEEE01004013    JAP59212.1    HAAD01002742    CDG68974.1    KB364953    ELV11804.1    ADTU01026113    KQ978878    KYN27852.1    NEDP02001668    OWF52731.1    KQ976435    KYM87103.1    GEDC01025768    GEDC01005681    JAS11530.1    JAS31617.1    GL888181    EGI65776.1    GL445887    EFN88891.1    JH000506    KE664067    EGW08629.1    ERE90378.1    PYGN01001553    PSN34116.1    GFFV01003263    JAV36682.1    AY815482    AAW27214.1    FN318518    FN318519    CAX74248.1    GL442047    EFN64006.1    LSMT01000033    PFX31612.1    MRZV01000580    PIK47441.1    AAWZ02021301    AAWZ02021302    AAWZ02021303    AAWZ02021304    EU350932    ABY60409.1    LBMM01005016    KMQ91899.1    CABD030051062    CABD030051063    CABD030051064    CABD030051065    CABD030051066    AC183550    AC187992    GABC01009295    GABF01003272    GABD01006066    GABE01007379    NBAG03000300    JAA02043.1    JAA18873.1    JAA27034.1    JAA37360.1    PNI43911.1    AC004453    BC003691    BC011673    BC035014    AB028991    AK024226   

Proteomes

UP000005204    UP000007151    UP000053268    UP000218220    UP000283053    UP000037510    + More
UP000053240    UP000002358    UP000215335    UP000242457    UP000005203    UP000053825    UP000076502    UP000030746    UP000053105    UP000019149    UP000075809    UP000017246    UP000046396    UP000274429    UP000046399    UP000267029    UP000078542    UP000053454    UP000000589    UP000019118    UP000276133    UP000053097    UP000279307    UP000248483    UP000011518    UP000005205    UP000078492    UP000242188    UP000078540    UP000007755    UP000008237    UP000265300    UP000001075    UP000030759    UP000245037    UP000252040    UP000000311    UP000225706    UP000230750    UP000265140    UP000001646    UP000264820    UP000036403    UP000001519    UP000002277    UP000005640   

PRIDE

H9J7U4    Q8R1N4    G3HMA9    C1LHS0    B0FTY2    Q8IVD9    + More

Pfam

PF04969   CS        + More
PF14050   Nudc_N
PF02269   TFIID-18kDa

Interpro

IPR025934   NudC_N_dom        + More
IPR007052   CS_dom       
IPR037898   NudC_fam       
IPR008978   HSP20-like_chaperone       
IPR037905   p23_NUDCD3       
IPR027761   NUDCD3       
IPR003195   TFIID_TAF13       
IPR009072   Histone-fold       

SUPFAM

SSF49764   SSF49764       

Gene 3D

2.60.40.790     1.10.20.10    

CDD

cd06495  p23_NUDCD3_like
cd07978  TAF13

ProteinModelPortal

H9J7U4   E3UKM0   A0A212EPJ8   A0A194QCG5   A0A2A4JZB5   A0A3S2M059   + More
A0A2H1W471   A0A0L7KRH3   A0A194QRZ1   K7IZ71   A0A232F1T3   A0A2A3EFY5   A0A088ATY0   A0A0L7QQ55   A0A154P906   V4BDP8   A0A1S8XAN8   A0A0M9A830   A0A074ZZK1   W6UZS0   A0A151WX58   A0A0K8TRF0   A0A068Y5P5   A0A068WPE9   A0A0R3WHY3   A0A0R3UDV6   A0A195CV49   A0A0L8FHW4   E9J3J2   B0FTY3   Q8R1N4   N6TBQ0   A0A3M7PMB8   A0A026WNB4   A0A3L8DDL2   A0A0X3QEA5   A0A2Y9PUB0   T2MA20   L8Y9N9   A0A158NTR0   A0A151JNI1   A0A210QVG8   A0A195BMI7   A0A1B6CE11   F4WJ06   E2B5S2   A0A340WHU0   G3HMA9   A0A2P8XQ31   A0A250XZ68   Q5DAE2   A0A341B9P2   C1LHS0   E2ARC8   A0A2B4SST4   A0A2Y9FJJ0   A0A2G8KHF5   A0A3P9APG1   H9G5V3   A0A3Q2XHD4   B0FTY2   A0A0J7KNT2   G3QG33   H2QUI4   Q8IVD9  

PDB

1WGV     E-value=5.90516e-16,     Score=205

KEGG

101739345    no KO assigned | (RefSeq) nudC domain-containing protein 3

GO

GO:1905793   GO:0060271   GO:0005868   GO:0006457   GO:0051082   GO:0032502   GO:0005737  

PANTHER

PTHR12356   PTHR12356:SF21  

Length:

326

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.89822

Exp number, first 60 AAs:

3.89816

Total prob of N-in:

0.16304

outside

1  -  326

 

 

Pi

161.156838

Theta

179.687252

Tajima's D

-0.514823

CLR

38.856811

CSRT

0.24028798560072

Interpretation

Uncertain