Gene

KWMTBOMO10184  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005584

Annotation

PREDICTED:_Usher_syndrome_type-1G_protein_homolog_[Amyelois_transitella]

Location

Bomo_Chr17(+):4045443-4068692      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.674

CDS

ATGTCCACGGACAGGTTCCACAAAGCAGCCAAAGATGGTCTACTGGAGGTACTGCGGGAAGCGACACGCAAAGAATGCAATAATAAAGATGAATCTGGAATGACTCCCACGCTGTGGGCTGCTTTCGAAGGACACATAGAAGCCCTGAGACTACTATGCGGGCGAGGCGGTGAACCAGACAAGGCCGACTATTTCGGCAATACAGCCCTTCATCTAGCAGCGGCCCGGGGTCACAAGGAATGCGTGACTTTCCTGGTCAACTTCGGAGCTAATGTGTACGCTATGGACGTCGACGGTCACTCCGCTCAGGAGCTGGCCGCTATTAATGGCAGAGAGGATATACTCCGGTACCTGGACCAGTCTACAGCAAAACTAGAAAACAATGATAAGAAGAAATCGAAAGCGCTCAAAGAGAAAGCCAGAAAAGACTACGAGAAATCGCAGAAGCAGTATCAGAAAAGACAGAGCAAAGCTGATCTCATGGCCGAGAAGGAAATGAAGAAGCTGGCCAAAGAGTGGGAACAGGGTTATGGTGAGGAGGTGTCCACTATGCCACATCGGCCCAGCAACGTGCTAATAGCGCTCAAGCAAAAGATGATCAGATCTACAAGTCAGGGTAACCTCCTGGCGGACGAGCAGCCCCGCCCGACGTACAGCACGCTGGTCGGCACCGTGAACTCGGGCGTCCGGGGCCGCGGCGCCGTCTACAAGAAGGCCCTCGCCAGCAAACTGCGCAACAACACGATCGGCCGTAATGGACCGAATGATGACTTCAAGGTTGGCGAATTAGAAACGACCGGTCGTCGTTCTCTGACGTCATTATCCGGGCTCCGTCGCGACAGTGAAGTGATGTACGTGGGCACGTTGGGCGCGGGACCGCAACACCGGGGGAACGTTACCGACGTGTTCACGGAGGACACCGATCAGAAGAAACCGCCACTGACAAGATCGGCAAGTCAACCGGATTTCACGGTTCTGTCTGGAGAAGACAGCGGCATAGGACAGGAGGTGATGCTGCAAGAGCCCGCCAGTATATTCGACAGACCAGGATTCGGGAGTGTAGCCTTTAGACGGTCCATAACGGCCACGCTGGGCGCGATGCCGGGCGCGCCGGGCGAGGACCTGTCCATCGGCTCGGCGGGGTCACTGGCCGCGCGCCACGCCCCCCGCACCGCCTACCGCCCCGCCGAGTGGACCGAGCCGCACTCAGAGAGCTCGACGATAACTTCGGACGAGGAGGGGGAGGCCGATGAGTCCGGCTCGGCGTCCCTAGAGCGTTTCCTGACCGCGTGGGGCCTCTCGCAGTACGTGCAGAAGTTTCGAGACGAACAAATCGACTTGGAAGCGCTCATGCTGCTGACCGAGAGCGACATGAAATCGCTCGGCCTACCTCTAGGTCCGTACAGAAAACTCGTCACAGCTGTCCAAGAGAGGAAACAGGCGTTAACTAACCCGGGACCCATAGTCGACACGGCGATCTGA

Protein

MSTDRFHKAAKDGLLEVLREATRKECNNKDESGMTPTLWAAFEGHIEALRLLCGRGGEPDKADYFGNTALHLAAARGHKECVTFLVNFGANVYAMDVDGHSAQELAAINGREDILRYLDQSTAKLENNDKKKSKALKEKARKDYEKSQKQYQKRQSKADLMAEKEMKKLAKEWEQGYGEEVSTMPHRPSNVLIALKQKMIRSTSQGNLLADEQPRPTYSTLVGTVNSGVRGRGAVYKKALASKLRNNTIGRNGPNDDFKVGELETTGRRSLTSLSGLRRDSEVMYVGTLGAGPQHRGNVTDVFTEDTDQKKPPLTRSASQPDFTVLSGEDSGIGQEVMLQEPASIFDRPGFGSVAFRRSITATLGAMPGAPGEDLSIGSAGSLAARHAPRTAYRPAEWTEPHSESSTITSDEEGEADESGSASLERFLTAWGLSQYVQKFRDEQIDLEALMLLTESDMKSLGLPLGPYRKLVTAVQERKQALTNPGPIVDTAI

Uniprot

H9J7U2   A0A2A4JZF6   A0A194QXF9   A0A212EPI5   A0A2H1V7B6   A0A2H1WCR0   + More
A0A2H1WCZ4   A0A2H1V616   A0A0L7L369   A0A2J7QN27   A0A1W4X2C7   A0A1Y1LJQ2   A0A1Y1LI48   A0A182PQN1   A0A182L3D5   A0A182I6Y9   Q7QIQ9   A0A182WWQ3   A0A182TE61   A0A182VLE8   A0A182JMA4   A0A182JUT1   A0A1Q3FA49   W5J9R6   A0A2M4ATA1   A0A182NJL9   W8BFN7   A0A182FDS6   B0XBG5   A0A0K8W307   A0A182R336   A0A182Y294   A0A034VSM7   A0A0M4EFX5   T1DN71   E2ASM7   N6SSA6   A0A0A1WL69   A0A3B0JNQ5   J3JVH7   Q16T60   F4X1M1   A0A158NKJ3   A0A087ZTW2   B4MJQ2   B3MDC4   A0A0L0C802   B4GH88   Q28XZ3   A0A182G121   A0A3L8E1I3   A0A1W4VCP6   A0A1I8P026   A0A182QTZ5   Q7JQL2   B4LM39   A0A1J1I7Z9   A0A0J9RBH0   B3NRT0   B4P4W5   A0A151WT62   B4HPY8   A0A336MMG4   A0A195EK62   A0A2A3EEC3   A0A0P4VQA1   A0A1L8DSV1   A0A182WL37   A0A195D031   A0A1A9X3Q3   A0A182MS25   A0A154PMS9   A0A026WVB3   A0A067QQN4   A0A1B0BVB0   A0A1B6CD13   A0A0C9QN17   D6WX01   A0A310SPV3   A0A1D2N385   W8B5C3   A0A1B6GQ44   A0A0P5J4J4   A0A0P5J835   E9FXB7   A0A0P5J422   A0A0P6HP02   A0A0P5UID4   A0A0P6AFN4   T1JIG7   A0A0L7QR70   A0A1B6KI22  

Pubmed

19121390    26354079    22118469    26227816    28004739    20966253    + More
12364791    14747013    17210077    20920257    23761445    24495485    25244985    25348373    20798317    23537049    25830018    22516182    17510324    21719571    21347285    17994087    26108605    15632085    23185243    26483478    30249741    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    22936249    18057021    17550304    24508170    24845553    18362917    19820115    27289101    21292972   

EMBL

BABH01020122    BABH01020123    NWSH01000358    PCG77024.1    KQ461155    KPJ08261.1    + More
AGBW02013457    OWR43384.1    ODYU01000866    SOQ36272.1    ODYU01007772    SOQ50827.1    SOQ50826.1    SOQ36271.1    JTDY01003256    KOB69865.1    NEVH01013201    PNF29990.1    GEZM01060142    JAV71247.1    GEZM01060143    JAV71246.1    APCN01003712    AAAB01008807    EAA04767.4    GFDL01010646    JAV24399.1    ADMH02001746    ETN61207.1    GGFK01010673    MBW43994.1    GAMC01018076    JAB88479.1    DS232633    EDS44277.1    GDHF01007059    JAI45255.1    GAKP01013840    JAC45112.1    CP012524    ALC42338.1    GAMD01003135    JAA98455.1    GL442333    EFN63562.1    APGK01058608    APGK01058609    KB741291    KB632343    ENN70529.1    ERL93027.1    GBXI01014528    JAC99763.1    OUUW01000001    SPP74281.1    BT127245    AEE62207.1    CH477659    EAT37647.1    GL888531    EGI59679.1    ADTU01002070    CH963846    EDW72341.1    CH902619    EDV36372.1    JRES01000780    KNC28381.1    CH479183    EDW35858.1    CM000071    EAL26173.1    KRT02898.1    JXUM01038027    KQ561151    KXJ79547.1    QOIP01000001    RLU26527.1    AXCN02000438    AE013599    BT009925    AAF58438.1    AAO41397.1    AAQ21582.1    CH940648    EDW59959.2    CVRI01000043    CRK96405.1    CM002911    KMY93378.1    KMY93379.1    CH954179    EDV56232.1    KQS62777.1    CM000158    EDW90686.1    KQ982757    KYQ51102.1    CH480816    EDW47651.1    UFQT01000784    SSX27198.1    KQ978801    KYN28307.1    KZ288268    PBC30060.1    GDRN01108547    JAI57214.1    GFDF01004532    JAV09552.1    KQ977110    KYN05734.1    AXCM01004683    KQ434973    KZC12764.1    KK107087    EZA59990.1    KK853541    KDR06891.1    JXJN01021173    GEDC01026053    JAS11245.1    GBYB01002052    JAG71819.1    KQ971361    EFA08068.1    KQ761834    OAD56697.1    LJIJ01000259    ODM99728.1    GAMC01018074    JAB88481.1    GECZ01005215    JAS64554.1    GDIQ01206719    JAK45006.1    GDIQ01205265    JAK46460.1    GL732526    EFX88296.1    GDIQ01203502    JAK48223.1    GDIQ01024259    JAN70478.1    GDIP01116636    JAL87078.1    GDIP01031346    JAM72369.1    JH431789    KQ414784    KOC61059.1    GEBQ01028869    JAT11108.1   

Proteomes

UP000005204    UP000218220    UP000053240    UP000007151    UP000037510    UP000235965    + More
UP000192223    UP000075885    UP000075882    UP000075840    UP000007062    UP000076407    UP000075902    UP000075903    UP000075880    UP000075881    UP000000673    UP000075884    UP000069272    UP000002320    UP000075900    UP000076408    UP000092553    UP000000311    UP000019118    UP000030742    UP000268350    UP000008820    UP000007755    UP000005205    UP000005203    UP000007798    UP000007801    UP000037069    UP000008744    UP000001819    UP000069940    UP000249989    UP000279307    UP000192221    UP000095300    UP000075886    UP000000803    UP000008792    UP000183832    UP000008711    UP000002282    UP000075809    UP000001292    UP000078492    UP000242457    UP000075920    UP000078542    UP000091820    UP000075883    UP000076502    UP000053097    UP000027135    UP000092460    UP000007266    UP000094527    UP000000305    UP000053825   

PRIDE

H9J7U2    Q7JQL2   

Pfam

PF12796   Ank_2        + More
PF00536   SAM_1
PF10177   DUF2371

Interpro

IPR020683   Ankyrin_rpt-contain_dom        + More
IPR036770   Ankyrin_rpt-contain_sf       
IPR001660   SAM       
IPR002110   Ankyrin_rpt       
IPR013761   SAM/pointed_sf       
IPR018787   DUF2371_TMEM200       
IPR033350   USH1G       

SUPFAM

SSF48403   SSF48403        + More
SSF47769   SSF47769       

Gene 3D

1.10.150.50     1.25.40.20    

CDD

cd00204  ANK

ProteinModelPortal

H9J7U2   A0A2A4JZF6   A0A194QXF9   A0A212EPI5   A0A2H1V7B6   A0A2H1WCR0   + More
A0A2H1WCZ4   A0A2H1V616   A0A0L7L369   A0A2J7QN27   A0A1W4X2C7   A0A1Y1LJQ2   A0A1Y1LI48   A0A182PQN1   A0A182L3D5   A0A182I6Y9   Q7QIQ9   A0A182WWQ3   A0A182TE61   A0A182VLE8   A0A182JMA4   A0A182JUT1   A0A1Q3FA49   W5J9R6   A0A2M4ATA1   A0A182NJL9   W8BFN7   A0A182FDS6   B0XBG5   A0A0K8W307   A0A182R336   A0A182Y294   A0A034VSM7   A0A0M4EFX5   T1DN71   E2ASM7   N6SSA6   A0A0A1WL69   A0A3B0JNQ5   J3JVH7   Q16T60   F4X1M1   A0A158NKJ3   A0A087ZTW2   B4MJQ2   B3MDC4   A0A0L0C802   B4GH88   Q28XZ3   A0A182G121   A0A3L8E1I3   A0A1W4VCP6   A0A1I8P026   A0A182QTZ5   Q7JQL2   B4LM39   A0A1J1I7Z9   A0A0J9RBH0   B3NRT0   B4P4W5   A0A151WT62   B4HPY8   A0A336MMG4   A0A195EK62   A0A2A3EEC3   A0A0P4VQA1   A0A1L8DSV1   A0A182WL37   A0A195D031   A0A1A9X3Q3   A0A182MS25   A0A154PMS9   A0A026WVB3   A0A067QQN4   A0A1B0BVB0   A0A1B6CD13   A0A0C9QN17   D6WX01   A0A310SPV3   A0A1D2N385   W8B5C3   A0A1B6GQ44   A0A0P5J4J4   A0A0P5J835   E9FXB7   A0A0P5J422   A0A0P6HP02   A0A0P5UID4   A0A0P6AFN4   T1JIG7   A0A0L7QR70   A0A1B6KI22  

PDB

4HQD     E-value=2.85607e-15,     Score=201

KEGG

101740171    K21878 Usher syndrome type-1G protein | (RefSeq) Usher syndrome type-1G protein homolog

GO

GO:0050953   GO:0050957   GO:0007605   GO:0000502   GO:0005769   GO:0005737   GO:0016021   GO:0005515   GO:0006355   GO:0043565   GO:0003824   GO:0008152   GO:0004588   GO:0006221   GO:0006402   GO:0046872  

PANTHER

PTHR24161:SF24  

Length:

493

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00565

Exp number, first 60 AAs:

0.00035

Total prob of N-in:

0.00659

outside

1  -  493

 

 

Pi

236.687698

Theta

174.383933

Tajima's D

1.600179

CLR

0.398372

CSRT

0.812959352032398

Interpretation

Uncertain