Gene

KWMTBOMO10178

Pre Gene Modal

BGIBMGA005582

Annotation

SOCS2-12_protein_[Bombyx_mori]

Location

Bomo_Chr17(+):3784358-3790894      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.265

CDS

ATGACTCTTGCAGCGCGAATTACCCCACAAAATGCGTGCTTGGAAGTAGGTGTGCCTCTGGGTGGCTGGTCGTCAGGTGTGGCATGCTGTCCGAATTGCAGGCACCAATTGCGAGTATCACTCGCGCCGGCGTCGGGCAAGTGTCACGCGTTGCCGTCGCCGCACACGCCGCCTTTCACCGTCCCCCCAACGTATTGGCCACATTCGCCTTTGTACGCGCCGCCATCACCGATCGCACCGGCGCCTTACAATGATGAACTGAAGCGGCTTGCTGATACCCTCAGTGCGCTTAGGCTCTCTGGGTGGTACTACGATACTTTGAATTGGCAGGGAGCGAGAACATTGTTAAAAGACGCCAGTGTCGGAGCTTTTGTCGTGAGAGACTCTGGAGATAGAAACTTTATATTCTCACTATCGGTGCAAACGGAAAGGGGCCCTACATCCGTGAGGCTTCATTACGAACAAGGATTCTTCAGGTTAGATTGTGACAGACCGTTGGCTAGGTACATGCCCCGGTTCAGATGCGTGGTGGAAATGGTGCAGCAGTACAGACGGGCGGGACAGCGCGGTGCGGCCGGTACGGTTTGGGTGGACCGCGAGGGGTGTCCACACTCGCCGGTGCTGCTCACCCATCCACTAAGGAAGAGCCCCCCATCTCTCATGCACGCGGCCCGCCTCGCTGTACACAAAGCCCTCGACTCCAACCCCCTCACTCCCAAGCTCTGGTGCGCTCCTAAACACAGGCTCCTCCCTCTCCCCTCCACTCTAATAGACTACCTAGGCGAATATCCGTACTCGATCTAA

Protein

MTLAARITPQNACLEVGVPLGGWSSGVACCPNCRHQLRVSLAPASGKCHALPSPHTPPFTVPPTYWPHSPLYAPPSPIAPAPYNDELKRLADTLSALRLSGWYYDTLNWQGARTLLKDASVGAFVVRDSGDRNFIFSLSVQTERGPTSVRLHYEQGFFRLDCDRPLARYMPRFRCVVEMVQQYRRAGQRGAAGTVWVDREGCPHSPVLLTHPLRKSPPSLMHAARLAVHKALDSNPLTPKLWCAPKHRLLPLPSTLIDYLGEYPYSI

Uniprot

H9J7U0   F2XHI7   A0A2A4JZA5   A0A2H1W606   A0A194QCF5   A0A194QTD5   + More
A0A212EIU7   S4NSQ6   A0A0L7LJJ7   A0A1Y1KR34   A0A1W4WWN6   A0A2P8ZGQ1   A0A1B6JB10   A0A1B6FRU0   A0A1B6LK57   A0A1B6GJF9   A0A1B6FYR9   A0A1B6LC24   A0A1B6EG95   A0A067QTM3   A0A023F0Z3   A0A224XVT4   T1HD47   E0VHG6   A0A2L2Y088   A0A0K0YBD3   E9IR72   W4XHC4   A0A3Q0IJH3   A0A3L8DCU6  

Pubmed

19121390    26354079    22118469    23622113    26227816    28004739    + More
29403074    24845553    25474469    20566863    26561354    26206609    21282665    30249741   

EMBL

BABH01020142    HQ540306    ADZ99024.1    NWSH01000358    PCG77018.1    ODYU01006570    + More
SOQ48521.1    KQ459232    KPJ02665.1    KQ461155    KPJ08265.1    AGBW02014579    OWR41390.1    GAIX01013972    JAA78588.1    JTDY01000867    KOB75622.1    GEZM01075900    JAV63889.1    PYGN01000062    PSN55668.1    GECU01011315    JAS96391.1    GECZ01030540    GECZ01017046    GECZ01015887    GECZ01014650    GECZ01010793    JAS39229.1    JAS52723.1    JAS53882.1    JAS55119.1    JAS58976.1    GEBQ01015917    JAT24060.1    GECZ01030276    GECZ01026536    GECZ01017024    GECZ01013011    GECZ01007218    JAS39493.1    JAS43233.1    JAS52745.1    JAS56758.1    JAS62551.1    GECZ01014447    JAS55322.1    GEBQ01018749    JAT21228.1    GEDC01000387    JAS36911.1    KK853286    KDR08949.1    GBBI01004026    JAC14686.1    GFTR01003856    JAW12570.1    ACPB03009573    DS235170    EEB12822.1    IAAA01006484    IAAA01006485    LAA01593.1    KR476664    AKS48289.1    GL765099    EFZ16932.1    AAGJ04061948    QOIP01000010    RLU18126.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007151    UP000037510    + More
UP000192223    UP000245037    UP000027135    UP000015103    UP000009046    UP000007110    UP000079169    UP000279307   

PRIDE

H9J7U0    F2XHI7   

Pfam

PF07525   SOCS_box        + More
PF00017   SH2

Interpro

IPR000980   SH2        + More
IPR001496   SOCS_box       
IPR036860   SH2_dom_sf       
IPR036036   SOCS_box-like_dom_sf       

SUPFAM

SSF55550   SSF55550        + More
SSF158235   SSF158235       

Gene 3D

3.30.505.10    

ProteinModelPortal

H9J7U0   F2XHI7   A0A2A4JZA5   A0A2H1W606   A0A194QCF5   A0A194QTD5   + More
A0A212EIU7   S4NSQ6   A0A0L7LJJ7   A0A1Y1KR34   A0A1W4WWN6   A0A2P8ZGQ1   A0A1B6JB10   A0A1B6FRU0   A0A1B6LK57   A0A1B6GJF9   A0A1B6FYR9   A0A1B6LC24   A0A1B6EG95   A0A067QTM3   A0A023F0Z3   A0A224XVT4   T1HD47   E0VHG6   A0A2L2Y088   A0A0K0YBD3   E9IR72   W4XHC4   A0A3Q0IJH3   A0A3L8DCU6  

PDB

6I5J     E-value=1.20538e-21,     Score=253

KEGG

100862764    K04695 suppressor of cytokine signaling 2 | (RefSeq) SOCS2-12; SOCS2-12 protein

GO

GO:0001558   GO:0008269   GO:0005737   GO:0005159   GO:0035556   GO:0046426  

Length:

267

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00670999999999998

Exp number, first 60 AAs:

0.0063

Total prob of N-in:

0.05573

outside

1  -  267

 

 

Pi

296.675606

Theta

209.317802

Tajima's D

1.643085

CLR

0.011896

CSRT

0.816659167041648

Interpretation

Uncertain