Gene

KWMTBOMO10165

Pre Gene Modal

BGIBMGA005572

Annotation

putative_tetratricopeptide_repeat_protein_[Heliconius_melpomene]

Location

Bomo_Chr17(+):3394294-3399433      View in EpiBrowser

Full name

Intraflagellar transport protein 56      

Alternative Name

Tetratricopeptide repeat protein 26

Location in the cell

Cytoplasmic   Reliability : 1.23 Extracellular   Reliability : 1.298

CDS

ATGCGTTATCGCAGGTTGTATAACGGAAAAGCAGCAGAAAACGAATTGAAGCTGATATCCTCAGACCAGCACACGTTTGGGCAGGATCTGGTCAAGCACAACCTTGTCGTATTTAGAAACGGCGAGGGAGCCTTGAAGACCCTCCCTGGACTAGTAGACGTGGTTCCAGAAGCGCGTCTGAACTTGGCCGGGTACAGGCTCCGCAACCGGGAGCCGCTAGAAGCGAGGGTCCTGCTAGAGCCCTTGCACCCCACGTCACCGCTACACTACATACTGCGCGCTGTGGTCGCCGTCAGGATATACAACGACACTTCCGATGACGAGCAGATGAAGTTAGCCCAGCAGAGTTTCCATCTTGTGGGCAGTTCTGCGTCGGAATGCGACACGATCCCGGGACGACAGTGCATGGCGTCCTCTTACTTCCTCGCCGGACACTTCGAGGAGGTGCTGGTCTACCTGAACAGCATCAAGAGTTTCTTCGTCAATGACGACACATTCAACTTTAATTATGCGCAGGCCAAAGTCGCAACCGGTTTTTACAGAGAGGCCGAAGAATGCCTGTTGGCTATACAGGACGAGAACATGCGCAGCTCGTTTACTTACCTAGCCTGTCTCTGTCGATGTCACGTCATGAACAAGGACGCACATCTCGCTTGGCAGATATGTGCTAATTCCGCAGGCACCCCGGACAGCTTTGCACTGCTACAACTGGTCGCGAACGACAGCTACCGAATGGGTCAGTTCCTGGTGGCGGCCAAATGCTTTCACATGCTGGATCGTCTGGACGGCGGCCCGGAGATGTGGGAGGGTCTGAGGGGAGCCGTGTGCGGATGCGCTCAAGCTGCTGCAGCCAACAAGCCGGGAGCAGCTGCCGAACTGCGGGACGCGCTGGCTCTGCTCAAAGGACCAAGAGCTCATCCGAGAGCTGACCACGTGGTCCGTCCTATAGCTAAATGGGCCCAGCAAAATAGAATACCGATTTGA

Protein

MRYRRLYNGKAAENELKLISSDQHTFGQDLVKHNLVVFRNGEGALKTLPGLVDVVPEARLNLAGYRLRNREPLEARVLLEPLHPTSPLHYILRAVVAVRIYNDTSDDEQMKLAQQSFHLVGSSASECDTIPGRQCMASSYFLAGHFEEVLVYLNSIKSFFVNDDTFNFNYAQAKVATGFYREAEECLLAIQDENMRSSFTYLACLCRCHVMNKDAHLAWQICANSAGTPDSFALLQLVANDSYRMGQFLVAAKCFHMLDRLDGGPEMWEGLRGAVCGCAQAAAANKPGAAAELRDALALLKGPRAHPRADHVVRPIAKWAQQNRIPI

Description

Component of the intraflagellar transport (IFT) complex B required for transport of proteins in the motile cilium. Required for transport of specific ciliary cargo proteins related to motility, while it is neither required for IFT complex B assembly or motion nor for cilium assembly. Plays a key role in maintaining the integrity of the IFT complex B and the proper ciliary localization of the IFT complex B components. Essential for maintaining proper microtubule organization within the ciliary axoneme.

Subunit

Component of the IFT complex B.

Similarity

Belongs to the IFT56 family.

Keywords

Cell projection   Cilium   Complete proteome   Protein transport   Reference proteome   Repeat   TPR repeat   Transport  

Feature

chain  Intraflagellar transport protein 56

Uniprot

H9J7T0   D0ABA5   A0A2A4JSW2   A0A2H1V7R7   A0A2H1W9I1   A0A212F6I1   + More
A0A194QAT4   A0A194QTF4   A0A093SXL7   A0A3M6TES6   A0A2B4RLZ5   A0A1W5AW79   A0A0P4WBE6   A0A3R7M687   A0A182G5X7   A0A0L0HEW4   B0XFL7   R7TTC9   A0A2H1CP88   A0A099ZMU1   Q16JV7   A0A3B3RX62   H2KSG7   A0A093H9T6   A0A183AFK7   A0A1S8WWB4   A0A182K4S4   A0A2D4HFG1   A0A091KDX0   G5B554   A0A091S463   A0A0L0HE99   A0A182LXG3   A0A3B4D7R7   A0A182RP01   A0A1S3HKT6   A0A1S3KIA4   A0A2Y9RL25   A0A182V3K8   A0A2T7PXV1   A0A182F6V3   A0A182QNC2   A0A384CM92   A0A094MY89   A0A182HGS3   A0A2C9JVJ6   A0A182XV95   V3Z2A9   A0A182X2Q4   A0A182TXS2   A0A182KMB3   A0A182P5M4   A0A1S3HMI6   A0A182VQS4   A0A1S3KHV1   A0A3Q1NHN6   A0A2U4CEQ4   A0A0P4W628   Q7PYA1   A0A182IM94   W5JFR6   A0A084VRN0   A0A075AJ96   A0A182NFJ5   C3Y9Y7   A0A2Y9TAM0   A0A210QW50   A0A093N813   A0A2Y9K2J2   A0A2U3WXL1   S4R7C2   A0A3P8ZJS5   A0A060VTZ3   A0A091V3F2   A0A1S3S3X2   A0A341B9E4   A0A091SYS2   A0A2K5RNI0   A0A2I0USD4   A0A3Q0GME4   F1MF33   G1NHH2   W5PNF9   A0A3Q1AZS6   A0A3P8RTD0   A0A2P4THJ9   F1NK58   A0A2U3XWU1   A0A2J7QEA5   A0A1S3S3X1   A0A2Y9TAL4   A0A0A0A0M3   A0A3Q0GQY0   A0A093EV19   A0A091RNJ3   G1TEP6   A0A337SHK5   A4III8   F7BZC2   A0A341B7X5  

Pubmed

19121390    22118469    26354079    30382153    26483478    23254933    + More
17510324    29240929    22023798    21993625    15562597    25244985    20966253    19393038    12364791    14747013    17210077    20920257    23761445    24438588    18563158    28812685    25069045    24755649    20838655    20809919    15592404    21993624    17975172    20431018   

EMBL

BABH01020169    BABH01020170    FP102341    CBH09300.1    NWSH01000703    PCG74704.1    + More
ODYU01001126    SOQ36903.1    ODYU01007198    SOQ49765.1    AGBW02010007    OWR49346.1    KQ459232    KPJ02648.1    KQ461155    KPJ08285.1    KL672898    KFW87269.1    RCHS01003767    RMX39882.1    LSMT01000446    PFX17839.1    GDRN01084018    JAI61573.1    QCYY01002062    ROT73119.1    JXUM01146870    KQ570256    KXJ68406.1    KQ257458    KNC99308.1    DS232938    EDS26880.1    AMQN01002197    KB308638    ELT97163.1    KZ428780    PIS89277.1    KL896077    KGL83191.1    CH477989    EAT34585.1    DF143393    NIRI01000374    GAA28656.1    RJW71324.1    KL205872    KFV75772.1    UZAN01042618    VDP76420.1    KV893944    OON18684.1    IACK01022752    LAA70683.1    KK741016    KFP38774.1    JH168530    EHB04415.1    KK940067    KFQ50013.1    KNC99309.1    AXCM01008370    PZQS01000001    PVD38254.1    AXCN02000212    KL260558    KFZ59446.1    APCN01005943    KB203412    ESO84728.1    GDRN01084016    JAI61574.1    AAAB01008987    EAA01139.5    ADMH02001524    ETN62188.1    ATLV01015761    KE525036    KFB40624.1    KL596629    KER32999.1    GG666493    EEN62896.1    NEDP02001549    OWF52990.1    KL224555    KFW61133.1    FR904301    CDQ58281.1    KK412046    KFQ84313.1    KK489876    KFQ63160.1    KZ505643    PKU48949.1    AMGL01089340    PPHD01000187    POI35837.1    AADN05000523    NEVH01015316    PNF26920.1    KL870368    KGL88139.1    KK380363    KFV48055.1    KK705646    KFQ30092.1    AANG04000096    BC136035    AAMC01036707    AAMC01036708   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000053258    + More
UP000275408    UP000225706    UP000192224    UP000283509    UP000069940    UP000249989    UP000053201    UP000002320    UP000014760    UP000053641    UP000008820    UP000261540    UP000053584    UP000050740    UP000075881    UP000006813    UP000075883    UP000261440    UP000075900    UP000085678    UP000248480    UP000075903    UP000245119    UP000069272    UP000075886    UP000261680    UP000075840    UP000076420    UP000076408    UP000030746    UP000076407    UP000075902    UP000075882    UP000075885    UP000075920    UP000009136    UP000245320    UP000007062    UP000075880    UP000000673    UP000030765    UP000075884    UP000001554    UP000242188    UP000054081    UP000248482    UP000245340    UP000245300    UP000265140    UP000193380    UP000087266    UP000252040    UP000233040    UP000189705    UP000001645    UP000002356    UP000257160    UP000265080    UP000000539    UP000245341    UP000235965    UP000053858    UP000001811    UP000011712    UP000008143   

PRIDE

H9J7T0   

Pfam

PF13181   TPR_8        + More
PF07721   TPR_4
PF13174   TPR_6

Interpro

IPR011990   TPR-like_helical_dom_sf        + More
IPR030511   TTC26       
IPR019734   TPR_repeat       
IPR013026   TPR-contain_dom       
IPR011717   TPR-4       

SUPFAM

SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

H9J7T0   D0ABA5   A0A2A4JSW2   A0A2H1V7R7   A0A2H1W9I1   A0A212F6I1   + More
A0A194QAT4   A0A194QTF4   A0A093SXL7   A0A3M6TES6   A0A2B4RLZ5   A0A1W5AW79   A0A0P4WBE6   A0A3R7M687   A0A182G5X7   A0A0L0HEW4   B0XFL7   R7TTC9   A0A2H1CP88   A0A099ZMU1   Q16JV7   A0A3B3RX62   H2KSG7   A0A093H9T6   A0A183AFK7   A0A1S8WWB4   A0A182K4S4   A0A2D4HFG1   A0A091KDX0   G5B554   A0A091S463   A0A0L0HE99   A0A182LXG3   A0A3B4D7R7   A0A182RP01   A0A1S3HKT6   A0A1S3KIA4   A0A2Y9RL25   A0A182V3K8   A0A2T7PXV1   A0A182F6V3   A0A182QNC2   A0A384CM92   A0A094MY89   A0A182HGS3   A0A2C9JVJ6   A0A182XV95   V3Z2A9   A0A182X2Q4   A0A182TXS2   A0A182KMB3   A0A182P5M4   A0A1S3HMI6   A0A182VQS4   A0A1S3KHV1   A0A3Q1NHN6   A0A2U4CEQ4   A0A0P4W628   Q7PYA1   A0A182IM94   W5JFR6   A0A084VRN0   A0A075AJ96   A0A182NFJ5   C3Y9Y7   A0A2Y9TAM0   A0A210QW50   A0A093N813   A0A2Y9K2J2   A0A2U3WXL1   S4R7C2   A0A3P8ZJS5   A0A060VTZ3   A0A091V3F2   A0A1S3S3X2   A0A341B9E4   A0A091SYS2   A0A2K5RNI0   A0A2I0USD4   A0A3Q0GME4   F1MF33   G1NHH2   W5PNF9   A0A3Q1AZS6   A0A3P8RTD0   A0A2P4THJ9   F1NK58   A0A2U3XWU1   A0A2J7QEA5   A0A1S3S3X1   A0A2Y9TAL4   A0A0A0A0M3   A0A3Q0GQY0   A0A093EV19   A0A091RNJ3   G1TEP6   A0A337SHK5   A4III8   F7BZC2   A0A341B7X5  

KEGG

101742375    K19685 intraflagellar transport protein 56 | (RefSeq) intraflagellar transport protein 56

GO

GO:0031514   GO:0042802   GO:0008594   GO:0035845   GO:0039023   GO:0042073   GO:0060271   GO:0005929   GO:0035735   GO:0097546   GO:0036064   GO:0030992   GO:0035720   GO:0120170   GO:1905198   GO:0061512   GO:0035082   GO:0007224   GO:0005813   GO:0005515   GO:0003676   GO:0005634   GO:0008270   GO:0042773   GO:0016651   GO:0006402   GO:0046872   GO:0003824  

PANTHER

PTHR14781  

Subcellular location

  

Length:

327

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0749199999999999

Exp number, first 60 AAs:

0.00172

Total prob of N-in:

0.13919

outside

1  -  327

 

 

Pi

182.636664

Theta

157.255763

Tajima's D

0.765317

CLR

0.152202

CSRT

0.591620418979051

Interpretation

Uncertain