Gene

KWMTBOMO10164

Pre Gene Modal

BGIBMGA005572

Annotation

PREDICTED:_intraflagellar_transport_protein_56?_partial_[Papilio_polytes]

Location

Bomo_Chr17(+):3388654-3390504      View in EpiBrowser

Full name

Intraflagellar transport protein 56      

Alternative Name

Tetratricopeptide repeat protein 26

Location in the cell

Cytoplasmic   Reliability : 1.447 Nuclear   Reliability : 1.601

CDS

ATGGATGAAAGAATAGCTGATAATATAGAAATGGATATTGCTGTGTGCTATTTCTATTTAGGGATGTACAAGGAATCGCATGAAGCCGCCGAAAAAGCTCCAACATGCACCTTGAAGAACCGACTACAGTTCCACTTGGCTCACAAGCTCAACGACGAGGAAGGTCTGATGCGTACTCACGCTGCCCTTCGAGATATACCGGAAGACCAGCTCAGCTTGGCCTCAGTTCACTACCTGAGGGCTCATTACCAGGAAGCTATTGATGTTTACAAGAAATTGTTGCTCGAAAGACGGTAG

Protein

MDERIADNIEMDIAVCYFYLGMYKESHEAAEKAPTCTLKNRLQFHLAHKLNDEEGLMRTHAALRDIPEDQLSLASVHYLRAHYQEAIDVYKKLLLERR

Description

Component of the intraflagellar transport (IFT) complex B required for transport of proteins in the motile cilium. Required for transport of specific ciliary cargo proteins related to motility, while it is neither required for IFT complex B assembly or motion nor for cilium assembly. Plays a key role in maintaining the integrity of the IFT complex B and the proper ciliary localization of the IFT complex B components. Essential for maintaining proper microtubule organization within the ciliary axoneme.

Subunit

Component of the IFT complex B.

Similarity

Belongs to the IFT56 family.

Keywords

Cell projection   Cilium   Complete proteome   Protein transport   Reference proteome   Repeat   TPR repeat   Transport  

Feature

chain  Intraflagellar transport protein 56

Uniprot

H9J7T0   A0A2A4JSW2   A0A212F6I1   A0A194QAT4   A0A194QTF4   A0A2H1W9I1   + More
A0A2H1V7R7   D0ABA5   A7SZB0   A0A1S8W947   A0A1S8W958   A0A1Y2C711   U4U800   N6UGX7   A0A177WHF2   F4PE37   A0A1L8GND8   A0A0T6B3F9   A0A0L0HEW4   A0A1S3HKT6   A0A1S3KIA4   A0A0L0HE99   A0A1Y1KJ10   A0A1B0DNX6   A0A091K2U2   A0A1Y1VJ22   A0A2B4RLZ5   A0A3M6TES6   A0A1Y1WW27   A0A0L0T2R8   C3Y9Y7   A0A3Q1NHN6   D6WVY7   A0A2Y9TAM0   A0A3Q1MHS6   A0A287AI77   A0A2Y9TAL4   F1MF33   K9KDE1   A0A210QW50   F6SI03   A0A088AR85   L8IBA0   A0A2Y9T774   A0A091KDX0   A0A369RSR6   B3S987   A0A1V4J9V8   A0A2U4CFQ4   G1TEP6   A0A091W1S0   A0A384CLA1   A0A3Q7XLY9   A0A138ZZD7   A0A093SXL7   A0A2U4CFA2   A0A151HXU3   V9KR02   A0A2U4CF51   A0A1V4JAA7   G1NHH2   W5N287   G3TCC1   A0A0F8AT85   A0A2U4CF47   A4III8   A0A341B9E4   F7BZC2   A0A2I0MJE2   A0A1U7TV60   A0A2A3E9E2   A0A1S3WE55   R7VWU5   A0A3P4PBT3   A0A093BHZ9   A0A341B7X5   A0A2U4CEG8   A0A093QN25   A0A060VXV7   A0A2U3XWU1   A0A0M8ZUM4   A0A091HLF9   A0A1S3S3W4   A0A2I0USD4   A0A3Q7QV35   H2ZMQ2   A0A093FYU8   A0A1W4WFA0   A0A1S3S3X2   A0A337SHK5   A0A2U3WXA4   A0A2Y9NL40   A0A1S3L7D5   A0A094MY89   A0A337SKE0   U6D590   A0A3Q2H7I7   A0A091SYS2   A0A060XL21   A0A151WI44  

Pubmed

19121390    22118469    26354079    17615350    23537049    27762356    + More
28004739    30382153    18563158    19393038    18362917    19820115    28812685    19892987    22751099    30042472    18719581    21993624    25977457    24402279    20838655    25835551    20431018    23371554    24755649    17975172   

EMBL

BABH01020169    BABH01020170    NWSH01000703    PCG74704.1    AGBW02010007    OWR49346.1    + More
KQ459232    KPJ02648.1    KQ461155    KPJ08285.1    ODYU01007198    SOQ49765.1    ODYU01001126    SOQ36903.1    FP102341    CBH09300.1    DS469957    EDO30962.1    LYON01000022    OON10992.1    OON10991.1    MCGO01000027    ORY42813.1    KB632064    ERL88453.1    APGK01035650    APGK01035651    KB740928    ENN77902.1    DS022302    OAJ39206.1    GL882896    EGF76485.1    CM004472    OCT85347.1    LJIG01016001    KRT81913.1    KQ257458    KNC99308.1    KNC99309.1    GEZM01082174    JAV61413.1    AJVK01007813    AJVK01007814    KK544172    KFP31792.1    MCFH01000008    ORX56092.1    LSMT01000446    PFX17839.1    RCHS01003767    RMX39882.1    MCFG01000235    ORX77761.1    GG745358    KNE68899.1    GG666493    EEN62896.1    KQ971359    EFA08635.1    AEMK02000111    JL623455    AEP99724.1    NEDP02001549    OWF52990.1    JH881572    ELR53498.1    KK741016    KFP38774.1    NOWV01000219    RDD37735.1    DS985258    EDV20604.1    LSYS01008398    OPJ69018.1    KL411538    KFR08960.1    KQ965850    KXS09778.1    KL672898    KFW87269.1    KQ976748    KYM75317.1    JW868250    AFP00768.1    OPJ69019.1    AHAT01036115    AHAT01036116    AHAT01036117    AHAT01036118    AHAT01036119    AHAT01036120    AHAT01036121    AHAT01036122    AHAT01036123    AHAT01036124    KQ042803    KKF10466.1    BC136035    AAMC01036707    AAMC01036708    AKCR02000009    PKK29788.1    KZ288313    PBC28345.1    KB375573    EMC84808.1    PKK29789.1    CYRY02031824    VCX07593.1    KN125811    KFU84543.1    KL426006    KFW90303.1    FR904335    CDQ59848.1    KQ435837    KOX71475.1    KL217504    KFO96044.1    KZ505643    PKU48949.1    KK637963    KFV59571.1    AANG04000096    KL260558    KFZ59446.1    HAAF01006336    CCP78160.1    KK489876    KFQ63160.1    FR905579    CDQ80258.1    KQ983097    KYQ47498.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053268    UP000053240    UP000001593    + More
UP000189906    UP000193642    UP000030742    UP000019118    UP000077115    UP000007241    UP000186698    UP000053201    UP000085678    UP000092462    UP000193719    UP000225706    UP000275408    UP000193944    UP000054350    UP000001554    UP000009136    UP000007266    UP000008227    UP000242188    UP000002281    UP000005203    UP000248484    UP000253843    UP000009022    UP000190648    UP000245320    UP000001811    UP000053283    UP000261680    UP000286642    UP000070544    UP000053258    UP000078540    UP000001645    UP000018468    UP000007646    UP000008143    UP000252040    UP000053872    UP000189704    UP000242457    UP000079721    UP000193380    UP000245341    UP000053105    UP000054308    UP000087266    UP000286640    UP000007875    UP000192223    UP000011712    UP000245340    UP000248483    UP000075809   

PRIDE

H9J7T0   

Pfam

PF13174   TPR_6        + More
PF13181   TPR_8
PF08729   HUN
PF14075   UBN_AB

Interpro

IPR011990   TPR-like_helical_dom_sf        + More
IPR030511   TTC26       
IPR019734   TPR_repeat       
IPR013026   TPR-contain_dom       
IPR026943   Ubinuclein-2       
IPR026947   UBN_middle_dom       
IPR014840   HRD       

SUPFAM

SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

H9J7T0   A0A2A4JSW2   A0A212F6I1   A0A194QAT4   A0A194QTF4   A0A2H1W9I1   + More
A0A2H1V7R7   D0ABA5   A7SZB0   A0A1S8W947   A0A1S8W958   A0A1Y2C711   U4U800   N6UGX7   A0A177WHF2   F4PE37   A0A1L8GND8   A0A0T6B3F9   A0A0L0HEW4   A0A1S3HKT6   A0A1S3KIA4   A0A0L0HE99   A0A1Y1KJ10   A0A1B0DNX6   A0A091K2U2   A0A1Y1VJ22   A0A2B4RLZ5   A0A3M6TES6   A0A1Y1WW27   A0A0L0T2R8   C3Y9Y7   A0A3Q1NHN6   D6WVY7   A0A2Y9TAM0   A0A3Q1MHS6   A0A287AI77   A0A2Y9TAL4   F1MF33   K9KDE1   A0A210QW50   F6SI03   A0A088AR85   L8IBA0   A0A2Y9T774   A0A091KDX0   A0A369RSR6   B3S987   A0A1V4J9V8   A0A2U4CFQ4   G1TEP6   A0A091W1S0   A0A384CLA1   A0A3Q7XLY9   A0A138ZZD7   A0A093SXL7   A0A2U4CFA2   A0A151HXU3   V9KR02   A0A2U4CF51   A0A1V4JAA7   G1NHH2   W5N287   G3TCC1   A0A0F8AT85   A0A2U4CF47   A4III8   A0A341B9E4   F7BZC2   A0A2I0MJE2   A0A1U7TV60   A0A2A3E9E2   A0A1S3WE55   R7VWU5   A0A3P4PBT3   A0A093BHZ9   A0A341B7X5   A0A2U4CEG8   A0A093QN25   A0A060VXV7   A0A2U3XWU1   A0A0M8ZUM4   A0A091HLF9   A0A1S3S3W4   A0A2I0USD4   A0A3Q7QV35   H2ZMQ2   A0A093FYU8   A0A1W4WFA0   A0A1S3S3X2   A0A337SHK5   A0A2U3WXA4   A0A2Y9NL40   A0A1S3L7D5   A0A094MY89   A0A337SKE0   U6D590   A0A3Q2H7I7   A0A091SYS2   A0A060XL21   A0A151WI44  

KEGG

101742375    K19685 intraflagellar transport protein 56 | (RefSeq) intraflagellar transport protein 56

GO

GO:0030992   GO:0036064   GO:0097546   GO:0035735   GO:0120170   GO:0035720   GO:0031514   GO:1905198   GO:0061512   GO:0035082   GO:0007224   GO:0005813   GO:0003727   GO:0032197   GO:1990904   GO:0005634   GO:0042073   GO:0005929   GO:0035845   GO:0008594   GO:0039023   GO:0005515   GO:0003676   GO:0008270   GO:0042773   GO:0016651   GO:0006402   GO:0046872   GO:0003824  

PANTHER

PTHR14781   PTHR21669:SF10  

Subcellular location

  

Length:

98

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.02419

Exp number, first 60 AAs:

0.02419

Total prob of N-in:

0.46807

outside

1  -  98

 

 

Pi

13.60528

Theta

15.154764

Tajima's D

-0.600485

CLR

3.196425

CSRT

0.215239238038098

Interpretation

Uncertain