Gene

KWMTBOMO10163

Pre Gene Modal

BGIBMGA005632

Annotation

PREDICTED:_CAP-Gly_domain-containing_linker_protein_1_[Bombyx_mori]

Location

Bomo_Chr17(-):3372975-3377643      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.347 Nuclear   Reliability : 1.721

CDS

ATGTTCATATTCGGCCTGAGTAATGAAGTCTGGAAGCTCGAGTCTAAACTAGAAATGTTCCAGAAACAACTCGAGATCAAGAATTCCGAAATGGAGAAAGTCAACGACAAGGTGACAGCGTATGCTACAGAACTGGAAGACTTGGAGTTAGACAAACGGCGTCTAGTCAGTCTCTGGAACTCTGTTCTTGTTAACATCCAACAGCGTGATCGCGTCTACGATGCTGTCAGAGACGACTACCGAACACTTCAAGAAAACTATCGCACGTTACTGAACAATTTGGAGATTACAAAGAAACTTGCAATGGAGGAGATGAACAAAGGAAAAGAAATCGCCATGAACAAGGACAAGCTGCAGTATGATTTGGATCGGGCTGTTAAATTATTTGACACTGAAGACATGAAACGGGTTAATTTGGAAACTCAAATTGCAGAACTAACTGAAGCTATAGAGATGACAGAGAGAGATCAGGAAATGATTAAGTCTGAAAATCAAACGATGCGAAACATTTTGAAGAGTTCGGAGAAAGATTACGATCGTAAAAACGAGCTCAAACTCAAACTGGAAAATGATATATTAGCGAATCTACAAGAGTGTTTATTGAATGATAAAGCAGTTGAATCAATGGCGAACGGTATCAAGAAGATGAGGGAGCTATCCAGGAAACAGGAAATATCTCTAACCACAATGGAGAACCAACACGCGAAGATGATGATGGACCTCGAAATCTATCGCAACAGGCAAGCAAAGAATCAGCAGGTAATGGACGAAACACTCGCTCAAGTGAAAGCGAAAGAGAAGGAGCTGGAAGAGCTTCAAGAGAAGTACGATCAGAAGGCGATGGTCATCGTCAGGAAGCAACGGGAACTGGATATCGTGATGAAGAAGTACACGGCTTTGAAGGAAATTTTTGATTTGAAATCGCCGCAAGAGCGTCGCATCGAAGAGTTGGAGCTGCAGATCAAAGAATTGCGTGAACGAACCGAAGGGATGCAGCACGAGTGGCTTCGTCTGCAGGGACACGTCGTCAAACTGACCGAGCAACACCACAAGATGGCCACGGACATCAACTTGATTAACAAACGTAAGATATATAGATGTATAGAACAACGGTGTGCTTAG

Protein

MFIFGLSNEVWKLESKLEMFQKQLEIKNSEMEKVNDKVTAYATELEDLELDKRRLVSLWNSVLVNIQQRDRVYDAVRDDYRTLQENYRTLLNNLEITKKLAMEEMNKGKEIAMNKDKLQYDLDRAVKLFDTEDMKRVNLETQIAELTEAIEMTERDQEMIKSENQTMRNILKSSEKDYDRKNELKLKLENDILANLQECLLNDKAVESMANGIKKMRELSRKQEISLTTMENQHAKMMMDLEIYRNRQAKNQQVMDETLAQVKAKEKELEELQEKYDQKAMVIVRKQRELDIVMKKYTALKEIFDLKSPQERRIEELELQIKELRERTEGMQHEWLRLQGHVVKLTEQHHKMATDINLINKRKIYRCIEQRCA

Uniprot

H9J7Z0   D0ABA4   A0A212F6J9   A0A2A4JTI7   A0A2A4JTB2   A0A194QGS3   + More
A0A0L7KQV3   A0A0T6B7V4   A0A1W4XBB7   A0A139WCN3   A0A2P8XIC7   A0A067R257   U4TXI1   W5JNZ5   A0A232EI72   A0A182R9L5   A0A154PC00   Q16YM0   A0A1S4FJN0   A0A182F5E0   K7ITI3   E2B9W0   A0A182GVK7   A0A182YFB9   A0A182K5D3   A0A084WBX9   A0A182Q8X5   A0A1J1IK27   A0A182NF00   A0A1Q3FT71   B0W1I0   A0A2A3E7Y6   A0A336LUU3   A0A336MNX6   E0VHG2   A0A158P2H8   A0A1B6F188   A0A182NZV9   A0A195CLN7   A0A151XAP9   A0A182JI06   A0A026WCK7   A0A3L8DHG3   E2ASN7   A0A1S4H062   A0A182V085   A0A182KUL0   A0A182I521   A0A182WYQ1   A0A151J8Z5   A0A182U743   A0A1B6KFC9   F4W6N4   A0A1L8EM55   L7N2P9   A0A1B6C4I5   A0A0N0BCC1   A0A1B8XX47   B4KJ19   A0A0L0CDP7   A0A0Q9WAS1   A0A093K458   E9J3W3   A0A0L7QPI2   A0A091IPC7   A0A1X7VM09   A0A3M6TA72   A0A091WE25   A0A3Q0FSB8   A0A1S3IMY1   A0A1S3IM30   A0A1S3JFV0   A0A1S3JGJ6   R7VJU3   A0A0P9AN00   A0A226PM30   A0A1S3PZ42   A0A091E6Y9   A0A060X8N3   A0A195ERJ0   A0A2B4SSK6   W5N901   R0L364   A0A093D3C0   A0A087QXB0  

Pubmed

19121390    22118469    26354079    26227816    18362917    19820115    + More
29403074    24845553    23537049    20920257    23761445    28648823    17510324    20075255    20798317    26483478    25244985    24438588    20566863    21347285    24508170    30249741    12364791    20966253    21719571    27762356    20431018    17994087    26108605    21282665    30382153    23254933    24621616    24755649   

EMBL

BABH01020170    FP102341    CBH09299.1    AGBW02010007    OWR49348.1    NWSH01000703    + More
PCG74702.1    PCG74703.1    KQ459232    KPJ02646.1    JTDY01006846    KOB65648.1    LJIG01009265    KRT83426.1    KQ971363    KYB25677.1    PYGN01002030    PSN31759.1    KK852980    KDR12987.1    KB631708    ERL85507.1    ADMH02000797    ETN65033.1    NNAY01004350    OXU18018.1    KQ434869    KZC09343.1    CH477514    EAT39715.1    AAZX01003331    GL446605    EFN87547.1    JXUM01091229    KQ563898    KXJ73093.1    ATLV01022517    KE525333    KFB47723.1    AXCN02000838    CVRI01000054    CRL00591.1    GFDL01004245    JAV30800.1    DS231822    EDS25778.1    KZ288353    PBC27326.1    UFQS01000140    UFQT01000140    SSX00381.1    SSX20761.1    UFQT01001489    SSX30789.1    DS235170    EEB12818.1    ADTU01006777    GECZ01025814    JAS43955.1    KQ977595    KYN01618.1    KQ982335    KYQ57453.1    KK107274    EZA53658.1    QOIP01000008    RLU19766.1    GL442341    EFN63553.1    AAAB01008984    APCN01003748    KQ979492    KYN21225.1    GEBQ01029809    JAT10168.1    GL887707    EGI70110.1    CM004483    OCT60402.1    AAMC01072149    GEDC01028880    JAS08418.1    KQ435916    KOX68804.1    KV460926    OCA15220.1    CH933807    EDW13532.2    JRES01000648    KNC29609.1    CH940649    KRF81690.1    KL206726    KFV85279.1    GL768069    EFZ12414.1    KQ414813    KOC60545.1    KL218030    KFP01506.1    RCHS01004029    RMX38292.1    KK735371    KFR13922.1    AMQN01004215    KB292914    ELU16791.1    CH902626    KPU79143.1    AWGT02000039    OXB81061.1    KK717885    KFO52956.1    FR905099    CDQ76003.1    KQ982021    KYN30494.1    LSMT01000030    PFX31890.1    AHAT01000574    AHAT01000575    KB744629    EOA94722.1    KL471529    KFV19042.1    KL225963    KFM05864.1   

Proteomes

UP000005204    UP000007151    UP000218220    UP000053268    UP000037510    UP000192223    + More
UP000007266    UP000245037    UP000027135    UP000030742    UP000000673    UP000215335    UP000075900    UP000076502    UP000008820    UP000069272    UP000002358    UP000008237    UP000069940    UP000249989    UP000076408    UP000075881    UP000030765    UP000075886    UP000183832    UP000075884    UP000002320    UP000242457    UP000009046    UP000005205    UP000075885    UP000078542    UP000075809    UP000075880    UP000053097    UP000279307    UP000000311    UP000075903    UP000075882    UP000075840    UP000076407    UP000078492    UP000075902    UP000007755    UP000186698    UP000008143    UP000053105    UP000009192    UP000037069    UP000008792    UP000053584    UP000053825    UP000054308    UP000007879    UP000275408    UP000053605    UP000189705    UP000085678    UP000014760    UP000007801    UP000198419    UP000087266    UP000052976    UP000193380    UP000078541    UP000225706    UP000018468    UP000053286   

PRIDE

H9J7Z0   

Pfam

PF01284   MARVEL        + More
PF00023   Ank
PF00176   SNF2_N
PF12796   Ank_2
PF00076   RRM_1
PF00271   Helicase_C

Interpro

IPR037386   CCDC40        + More
IPR008253   Marvel       
IPR012677   Nucleotide-bd_a/b_plait_sf       
IPR000330   SNF2_N       
IPR000504   RRM_dom       
IPR002110   Ankyrin_rpt       
IPR038718   SNF2-like_sf       
IPR027417   P-loop_NTPase       
IPR035979   RBD_domain_sf       
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR036770   Ankyrin_rpt-contain_sf       
IPR020683   Ankyrin_rpt-contain_dom       
IPR003604   Matrin/U1-like-C_Znf_C2H2       

SUPFAM

SSF54928   SSF54928        + More
SSF48403   SSF48403       
SSF52540   SSF52540       

Gene 3D

1.25.40.20     3.30.70.330     3.40.50.10810    

CDD

cd00079  HELICc
cd00204  ANK

ProteinModelPortal

H9J7Z0   D0ABA4   A0A212F6J9   A0A2A4JTI7   A0A2A4JTB2   A0A194QGS3   + More
A0A0L7KQV3   A0A0T6B7V4   A0A1W4XBB7   A0A139WCN3   A0A2P8XIC7   A0A067R257   U4TXI1   W5JNZ5   A0A232EI72   A0A182R9L5   A0A154PC00   Q16YM0   A0A1S4FJN0   A0A182F5E0   K7ITI3   E2B9W0   A0A182GVK7   A0A182YFB9   A0A182K5D3   A0A084WBX9   A0A182Q8X5   A0A1J1IK27   A0A182NF00   A0A1Q3FT71   B0W1I0   A0A2A3E7Y6   A0A336LUU3   A0A336MNX6   E0VHG2   A0A158P2H8   A0A1B6F188   A0A182NZV9   A0A195CLN7   A0A151XAP9   A0A182JI06   A0A026WCK7   A0A3L8DHG3   E2ASN7   A0A1S4H062   A0A182V085   A0A182KUL0   A0A182I521   A0A182WYQ1   A0A151J8Z5   A0A182U743   A0A1B6KFC9   F4W6N4   A0A1L8EM55   L7N2P9   A0A1B6C4I5   A0A0N0BCC1   A0A1B8XX47   B4KJ19   A0A0L0CDP7   A0A0Q9WAS1   A0A093K458   E9J3W3   A0A0L7QPI2   A0A091IPC7   A0A1X7VM09   A0A3M6TA72   A0A091WE25   A0A3Q0FSB8   A0A1S3IMY1   A0A1S3IM30   A0A1S3JFV0   A0A1S3JGJ6   R7VJU3   A0A0P9AN00   A0A226PM30   A0A1S3PZ42   A0A091E6Y9   A0A060X8N3   A0A195ERJ0   A0A2B4SSK6   W5N901   R0L364   A0A093D3C0   A0A087QXB0  

KEGG

101741192    no KO assigned | (RefSeq) CAP-Gly domain-containing linker protein 1

GO

GO:0035082   GO:0060287   GO:0005930   GO:0016021   GO:0060271   GO:0003723   GO:0008270   GO:0005524   GO:0001947   GO:0003146   GO:0048793   GO:0044458   GO:0003356   GO:0030324   GO:0031514   GO:0035469   GO:0061512   GO:0071907   GO:0036159   GO:0030317   GO:0071910  

PANTHER

PTHR16275  

Length:

373

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00171

outside

1  -  373

 

 

Pi

156.218163

Theta

160.084109

Tajima's D

-0.326433

CLR

1.090725

CSRT

0.277086145692715

Interpretation

Uncertain