Gene

KWMTBOMO10156

Pre Gene Modal

BGIBMGA005633

Annotation

PREDICTED:_thrombospondin_type-1_domain-containing_protein_7A-like_[Bombyx_mori]

Location

Bomo_Chr17(-):3151767-3162163      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 3.319

CDS

ATGGAGGAGGGTTCCGCGGGGGGCCGCGAGTGCGGCGCGACCCTGCAGCGCTCGTCCTGCTCGGTGGGGTCCCCCCGCTGGGCCGTGGGCGAGTGGGCCCCCTGCACGCCGCCCGACGCGCTGTGCGGACATGCCGTCATCAACCGGACCGTTTCCTGCGTCGACGCGGACGGCAAGTGGCTGGAAGACGCGACTTGTGAGGCGTCCGGCGCGGGACCAGCGCCGGCGCGCGAGGCCACCTGCCGGGCCCCGTGTCCCGGGGACTGCGTCGTCAGCGCCTGGTCAGATTGGAGTCCTTGCGAGCAGACAAAGTGGGGGGGGCGCCGCGACCGTACGCGCGTGGTGCTGCGGGGGGCGCGGGCGGGCGGGGGTGCGTGCCCGCACCTCGTGGCGGCCGAGCGGTGCGCGCCCCACGCACACTCCTGGCACCTCGCGCCCTGGGACGACTGTCAGCCTCTCGGTGGTTCGCCTTGTGGCGAAGGGACGAAAAAACGCACCGTTCGATGTCTGCGCGGCGATGGGAAATTCGTTAACGACTCTTTCTGCCCTAACAAAACGGCGATAGAAGCCAAAGAATCGTGGTGCTACGTGCCGTGCGGCGTCGACTGTGAGGTCGGAGAGTGGAGCGGCTGGGACAGCTCTGCTTGCTCCTGCGGAGACGCTTCCTCCGCAAGGCACATGCGCCGGACCAGACAACGACTAACAGCTGCGGTATGGCCAGGACGCTCGTGCCCCCCCACGGAACAACGAGTTCCCTGCCCCAGAGAACCTTGTCTCAGACTAGTAGCACGACCTTCTCTTGGATGTCACATTCAAACTTCGGCGGGTGAAGAGGCAATCGGAGCTTGCGGTTTTGGAGTAAAGGCGTCGCAGGCGCGGTGCGAGCTGACCAACGTCGGGGACGAGCCCCCCACCGACGCTTACCTGGAGCCCTGGCGGTGCGCGCCCGTCCTGCCCGGGAGAATCGTCGCGCCATTGACGCAGTATCAGGAGGAGGGATCGTGTGAGGTAGAGTGCGGGTGCAGACAGGCGGCGGGCCAGCCGGGGCCGTGGGGGGCGTGGGGCCCGTGCCGCGCCGGCGCTCGCTCCCGCACCCGGCAGCTGCTGCTCAGACCCACCAGGACTTGCAACACGCCTTCCAGATACGTCACAATCGAATGGGCGAACTGCACTAGCGACTCGGACGAGCTCCCCGACGCGCCGGCCACCGAGCCGCGCGAGGAGAAGCCGCGGCAGCCCTGGGTCGACCGCGACGTCTACCATGACGGATACCTCGAGGGGAGCAGTTCAGTGCTGGCCGTGGTGTGGACGGCCACCCTGGTGCTCAGTCTGTACGGCGCGTTCATGCTGTACCGTGGATTCATTAGGTGCATCAGGAGCCGAAAACTGAAGACCATTACCAAAGTGTGA

Protein

MEEGSAGGRECGATLQRSSCSVGSPRWAVGEWAPCTPPDALCGHAVINRTVSCVDADGKWLEDATCEASGAGPAPAREATCRAPCPGDCVVSAWSDWSPCEQTKWGGRRDRTRVVLRGARAGGGACPHLVAAERCAPHAHSWHLAPWDDCQPLGGSPCGEGTKKRTVRCLRGDGKFVNDSFCPNKTAIEAKESWCYVPCGVDCEVGEWSGWDSSACSCGDASSARHMRRTRQRLTAAVWPGRSCPPTEQRVPCPREPCLRLVARPSLGCHIQTSAGEEAIGACGFGVKASQARCELTNVGDEPPTDAYLEPWRCAPVLPGRIVAPLTQYQEEGSCEVECGCRQAAGQPGPWGAWGPCRAGARSRTRQLLLRPTRTCNTPSRYVTIEWANCTSDSDELPDAPATEPREEKPRQPWVDRDVYHDGYLEGSSSVLAVVWTATLVLSLYGAFMLYRGFIRCIRSRKLKTITKV

Uniprot

A0A2A4K3G2   A0A3S2NYX4   A0A2H1V9E5   A0A212EP93   H9J7Z1   A0A194QAS9   + More
L7X3X3   D0ABA0   A0A0L7LJ01   A0A0P5DJA3   A0A0P6IWR9   M4AWU2   A0A1A8GBF0   A0A1A8EUJ7   A0A1A8MZE6   W4ZL47   A0A1A8C2J2   A0A1A8PEM2   A0A1A8J400   A0A1A8HS22   A0A3B3XDK5   A0A1A8V4C2   A0A1A8A2L5   A0A1A8AJM7   A0A147B5R4   A0A3Q2PB26   A0A1A8CKE2   A0A3P9PIC7   K7FLJ8   A0A3P9PI19   A0A3P9PHZ4  

Pubmed

22118469    19121390    26354079    23674305    26227816    23542700    + More
17381049   

EMBL

NWSH01000227    PCG78210.1    RSAL01000090    RVE48087.1    ODYU01001380    SOQ37470.1    + More
AGBW02013517    OWR43277.1    BABH01020186    BABH01020187    BABH01020188    BABH01020189    KQ459232    KPJ02643.1    KC469893    AGC92705.2    FP102340    FP102341    CBH09295.1    JTDY01000925    KOB75410.1    GDIP01155421    JAJ67981.1    GDIQ01016493    JAN78244.1    HAEB01021172    SBQ67699.1    HAEB01004005    SBQ50532.1    HAEF01020843    SBR62002.1    AAGJ04102198    AAGJ04102199    AAGJ04102200    AAGJ04102201    AAGJ04102202    AAGJ04102203    HADZ01008984    SBP72925.1    HAEH01006666    SBR79845.1    HAED01017786    SBR04231.1    HAED01001340    SBQ87185.1    HAEJ01015092    SBS55549.1    HADY01010413    SBP48898.1    HADY01016186    SBP54671.1    GCES01000588    JAR85735.1    HADZ01015285    SBP79226.1    AGCU01045782    AGCU01045783    AGCU01045784    AGCU01045785    AGCU01045786    AGCU01045787    AGCU01045788    AGCU01045789    AGCU01045790    AGCU01045791   

Proteomes

UP000218220    UP000283053    UP000007151    UP000005204    UP000053268    UP000037510    + More
UP000002852    UP000007110    UP000261480    UP000265000    UP000242638    UP000007267   

PRIDE

H9J7Z1   

Pfam

PF00090   TSP_1

Interpro

IPR036383   TSP1_rpt_sf        + More
IPR000884   TSP1_rpt       

SUPFAM

SSF82895   SSF82895       

Gene 3D

2.20.100.10    

ProteinModelPortal

A0A2A4K3G2   A0A3S2NYX4   A0A2H1V9E5   A0A212EP93   H9J7Z1   A0A194QAS9   + More
L7X3X3   D0ABA0   A0A0L7LJ01   A0A0P5DJA3   A0A0P6IWR9   M4AWU2   A0A1A8GBF0   A0A1A8EUJ7   A0A1A8MZE6   W4ZL47   A0A1A8C2J2   A0A1A8PEM2   A0A1A8J400   A0A1A8HS22   A0A3B3XDK5   A0A1A8V4C2   A0A1A8A2L5   A0A1A8AJM7   A0A147B5R4   A0A3Q2PB26   A0A1A8CKE2   A0A3P9PIC7   K7FLJ8   A0A3P9PI19   A0A3P9PHZ4  

KEGG

101741472    no KO assigned | (RefSeq) thrombospondin type-1 domain-containing protein 7A-like

GO

GO:0016021   GO:0031532   GO:0005886  

Length:

469

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.68868

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00022

outside

1  -  432

TMhelix

433  -  455

inside

456  -  469

 

 

Pi

298.505178

Theta

170.168961

Tajima's D

2.325075

CLR

0.262254

CSRT

0.925753712314384

Interpretation

Uncertain