Gene

KWMTBOMO10154

Annotation

Transposon_Tf2-8_polyprotein_[Thelohanellus_kitauei]

Location

Bomo_Chr17(-):3139331-3143493      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.218

CDS

ATGGATAAATACAACCCAGATAGATTCAGAATTGACGATTACATTGATTTTTTCGAAAACAAATGCAAAATTCTTGATATCAATAACAGCGACTTACAGAAAGATTTACTTTTGAATTTACTAACACCAGAGATATTCCACGAATTAAAAGTGGCTTTAACGCCTGATTTCGATATAGCTACATACAGCGAAATTTGTAACAAATTATTAGACCTCTATCGCATAAAAACGACGAGATATAGAGCCTTAACAGAATTTTGGAATTGCACTAGAGAACAAAATGAAACGATGGAGCACTATGCAAACAGATTAAAAAGTCTTAGTCGGGATTGTGGCTACACTAATGACTTCCTGGAACGACAATTACGTGACCGCTTTGCCACTGGATTGAATCATCCAGATTTAGAAACCGACTTGAAACAAAAATGGCCTGATTTAATTCAAATGGTAGACGGAATACCAAGAGAAGTAACCTTTCAACAAATTTTTACAATCTCTCAATCAAGAGAACAGGCAGAACAAGACACACCACGAACAAGTATTAAAAAAATAAATAGGAGCAAAACCAAAACCGTACCATTACATCAAAATACAACACGAAAATTAAATCCAATGCATTGTTTACGCTGTGGAAAGAAAGAACGGCACAGCCTATCACAGTGTTCAGCCAAGGACCATATTTGTAAAGAATGTAACACGAAGGCACACTTTGAGAGTTGTTGCATCAAGTCTGGACGGGCATACATCAGCTATACAAAAGGGAGTCGAAAATCAGTTAAAAAAATAACAAGACATCATAAGTCCTCAACATCATCATCATCTATCAGTAATAACGAGGAAGAAAGCGATGATGAAGTTATTTGCAGCGTCTTGGGTACACGTAAGAGAGAATGCAAACAAATCGATGTACGCATCAATGACATACCTTGCACTATGGATTGGGACCCCGGCTCTGCGTATTCAATAATAAACACGACATTATGGAAAAAATTAGGATCACCATCTTTACAACCCGCCCCGAAACTTAAGGCCTACGGTAATACAAACTTAAAAACAAAGGGAATTACAAAAGTAACAGTCGAAGTCGACGGACTGCAAAAACTTCTACCTGTGGTCGTAATGAAAAATGCCAAACCAATGTTATTTGGTTTACATTGGAGTGAAGTTTTTGAAATGGAATTTCCAAAACCAGTATACTCCATCAAAACATCAACACCGATGACTCTTAAACAAATATTGGATAAACATGTACAACTCTTTGATGGAAAACTAGGAAAAGTTAACAATTATTACGTAAACATACATGTCAAACCAGAAGCTGAACCGATCCACCTTCCTGCACGGCCTATAAAATTCAGCATGAAAAAGAATATAGAAAGGGAGTTAGATCGTCTGATCTCAGAAGGGATAGTGGAAAAAGTAGATCCTAATATTACACCTATTGAATGGGCTACACCCACAGTTAACATTCTGAAATCTACAGGGGAAGTTAGGATATGTGGAGACTACAGAACTACACTTAATCCAGTACTTATTAAACATCTTCACCCAGTTCCAATTTTCGATCAACTACGCCAAAATCTCGCAAACGGTAAATTATTTTCAAAAATAGACCTTAAAGACGCATACTTACAATTTGAAATAGCACCAGATTCGAAAAAGTACTTAACGTTGTCAACCCATAAAGGGTATTTCCAATACAATAGAATGCCTTTTGGAATATCGACTGCTCCTTCAATTTTTCAACATTTTCTGGATCAACTGCTAGGCGATATCACCAATGTAGCTGTATATTTTGACGACATAGCTATAGCAGGGAAAGATCTTTCAGAACATTTACAAACTTTGTCTATTGTATTCGATCGCTTACAAAACGCTGGCCTAAAAGTTAACTTAAAGAAATGTAATTTCTTACAGAATCAGATTGAATACCTAGGTCACATAATAAATAAACATGGCATCCACCCAACCAAATCTAAAATTGATGCCATAACTAATGCTCCAGCACCGTGTAATGCAAAAGAACTACGATCATTTTTAGGACTAGTTAATTTTTACGAACGGTTTGTACCACATCTTCACGGGATTTGTTCGGATCTTCACGATCTAACTAGTGAAAAAAATAGGTGGCGTTGGACTGATCATGAAAACAGAATATTTGAAGATACAAAGAAATGCATAACTTCTTCACAACCATTAATTGCATTTGACGAGAAACGTCCCCTTTATTTAGCATGTGACGCTTCCGAAAAGGGATTGGGTGCAGTATTATTCCACAAAGACTCGAACATAGAACAACCAATTGCTTTTGCTTCAAGGAAACTACGTCCAGCGGAAATGAAATATTCCGTTATTGATCGTGAAGCTTTAGCAATAGTATTTGGTATAAAAAAATTTGATCAGTACTTGAGAGGAACGAAATTTAATCTAGTTACGGACCATAAGCCTCTTATACATATTATGGGTGCACACCGCAACCTTCCTAAACTAGCCAATAACCGATTGGTAAGATGGGCCCTAGTAGTGGGAAGTTATCAATATGACATTTACTACAGGAAAGGTGAAAATAACACATTAGCTGATTGCCTTTCCAGATTACCAAACCCTGAAACTGAACCCTCCGAGACAGAAGGGCTTGTACATAAAATAGATCTACGTCTTTTGAGCACTCGAATGACTGACCTTAATCTATCAGAACAGTTACTTATGAAAACAACTTCAAAGGATCATATACTCACAAAAGTTTGTCAAAATTTAAAAACCGGCTGGAGAGAATCAGATTACAATCCAGAAATGAAACCATTCTACAGAAACCGGACTGAATTATCTGTTGAGAATAAAATACTTATGAGGCAAGGACGCATCGTTATACCTACAGCACTCCGAAAAGCCATTCTTACATATCTTCATCGAGGACATCCTGGCATTTCTGCTATGAAAGCACTTTCACGTTACTATGTTTGGTGGCCTAACCTTGACGAAGACATAGAATTATTTGTCAAGAAATGTACCAGATGCCAACAGAACCGCCCTTGTAATCCTGAACTTCCTGTATTTTCCTGGTCCATACCAGAAGAAGTATGGGAGAGAATCCATATCGACTTTGCTGGACCGTTCGAAGGATCGTATTGGTTGGTATTGTGCGACGCTCTCTCCAAATGGGTGGAAATACGACCGATGAAACACATTAACACCAGATCACTTTGTCTTACATTAGATAACATATTTTGTACATTTGGCTTACCAAAAATGATTATATCCGATAATGGACCTCAATTTACATCTTATGAATTTAAAGAATATTGCACAAAACAGTCTATTTTACATGTCACATCATCTCCATATCATCCTCGGACAAATGGGCTGGCAGAACGTTTAGTTAGAACATTCAAAAATAGAATGGCATCGGTAGACAACACAAATCTCGAGCGCCGACTATTAGAATTTTTGTTTACATACAGAAACACTCCGCACTCGTCCACTGGTAAATCTCCAGCTGAGATGATGTTTGGACGACAATTGAATTGCATACTTTCCAACATTCGGCCAGACAAAAGAAGATTAATGCAGTATTTACAAGTAAAAGAAAACATTCGTACCACATCACCGAGTTACCGACCAAGTGACCAAGTATATATTAAAACACGCAATGATAAAATATGGGAACCAGCGGTAATTACACCCCGAAAACATAAATATTCATATATTGTTTCAACACCAGGAGGACTAGAAAAACGAAGACACGCTGATCACATCAGGCCACGCGAGTCCTCCCCCTCAGAAACCCCGAGGAATGAAAGGGCGTATTCTTCTATGCTGCCGGCGACTGCTTCTCCAGACATTGGAATGGACACAACAATTGACGAAAGGCTAACTAAAAACAAGAATTCGGCAGCAGTACCATTACCTACACCGCAGTCACCTACAAATGTACAAATTTCTCCAAATTCACCTTCACAGCATTCGAAGTTATACTCCTCACCTGCTCCGGTCTCCACTCCTGTGCCATTTGCTCCGCGTCGAAGTAATCGACGTATACAGGCACCCCGCCGTCTGATCAACGAGATGTAG

Protein

MDKYNPDRFRIDDYIDFFENKCKILDINNSDLQKDLLLNLLTPEIFHELKVALTPDFDIATYSEICNKLLDLYRIKTTRYRALTEFWNCTREQNETMEHYANRLKSLSRDCGYTNDFLERQLRDRFATGLNHPDLETDLKQKWPDLIQMVDGIPREVTFQQIFTISQSREQAEQDTPRTSIKKINRSKTKTVPLHQNTTRKLNPMHCLRCGKKERHSLSQCSAKDHICKECNTKAHFESCCIKSGRAYISYTKGSRKSVKKITRHHKSSTSSSSISNNEEESDDEVICSVLGTRKRECKQIDVRINDIPCTMDWDPGSAYSIINTTLWKKLGSPSLQPAPKLKAYGNTNLKTKGITKVTVEVDGLQKLLPVVVMKNAKPMLFGLHWSEVFEMEFPKPVYSIKTSTPMTLKQILDKHVQLFDGKLGKVNNYYVNIHVKPEAEPIHLPARPIKFSMKKNIERELDRLISEGIVEKVDPNITPIEWATPTVNILKSTGEVRICGDYRTTLNPVLIKHLHPVPIFDQLRQNLANGKLFSKIDLKDAYLQFEIAPDSKKYLTLSTHKGYFQYNRMPFGISTAPSIFQHFLDQLLGDITNVAVYFDDIAIAGKDLSEHLQTLSIVFDRLQNAGLKVNLKKCNFLQNQIEYLGHIINKHGIHPTKSKIDAITNAPAPCNAKELRSFLGLVNFYERFVPHLHGICSDLHDLTSEKNRWRWTDHENRIFEDTKKCITSSQPLIAFDEKRPLYLACDASEKGLGAVLFHKDSNIEQPIAFASRKLRPAEMKYSVIDREALAIVFGIKKFDQYLRGTKFNLVTDHKPLIHIMGAHRNLPKLANNRLVRWALVVGSYQYDIYYRKGENNTLADCLSRLPNPETEPSETEGLVHKIDLRLLSTRMTDLNLSEQLLMKTTSKDHILTKVCQNLKTGWRESDYNPEMKPFYRNRTELSVENKILMRQGRIVIPTALRKAILTYLHRGHPGISAMKALSRYYVWWPNLDEDIELFVKKCTRCQQNRPCNPELPVFSWSIPEEVWERIHIDFAGPFEGSYWLVLCDALSKWVEIRPMKHINTRSLCLTLDNIFCTFGLPKMIISDNGPQFTSYEFKEYCTKQSILHVTSSPYHPRTNGLAERLVRTFKNRMASVDNTNLERRLLEFLFTYRNTPHSSTGKSPAEMMFGRQLNCILSNIRPDKRRLMQYLQVKENIRTTSPSYRPSDQVYIKTRNDKIWEPAVITPRKHKYSYIVSTPGGLEKRRHADHIRPRESSPSETPRNERAYSSMLPATASPDIGMDTTIDERLTKNKNSAAVPLPTPQSPTNVQISPNSPSQHSKLYSSPAPVSTPVPFAPRRSNRRIQAPRRLINEM

Uniprot

A0A224XI32   A0A0A9W3I3   A0A0A9W826   A0A0C2JFK2   A0A3P8Q506   A0A0C2MM68   + More
A0A0C2JXZ5   A0A1X7TIE8   A0A3P8NV61   A0A1X7TH22   A2TGR5   A0A1X7VU64   A0A3B3B4L9   A0A0V0RTT5   A0A3Q1EQC9   A0A3P8NEQ7   A2TGR4   A0A1A7YSF0   A0A0V1M0R9   A0A1A7WUZ7   A0A131XQT5   A0A3P8NHI5   A0A3P8QD94   A0A3P8VSE7   A0A3B3H2N7   A0A0C2MKX6   A0A0C2M800   A0A1S3HLN2   A0A0C2NF36   A0A090XCC9   A0A147BQ83   A0A3P8RGT3   A0A0V1BVI1   A0A267F699   A0A0V1GSV8   A0A267EVG4   A0A2I4C6V0   A0A0V1MIE6   A0A147BIP4   A0A3P8NEP7   A0A0V0TT39   A0A0V0T3M4   A0A0V0UEK4   A0A0V0VH28   A0A1A8QZH2   A0A0V0Z754   A0A0V0RYP2   A0A085LTS7   A0A085M8Q0   A0A0V0ZP51   A0A267EXJ4   A0A085N6I1   A0A147BIB8   A0A0V1HJS5   A0A267GR92   A0A131Y536   A0A0V1M3Q7   A0A2R2MK13   A0A0V0USW3   A0A0V1LU74   A0A147BK15   A0A3R7DF32   A0A1S3J391   A0A1Y1M058   A0A1S3KHX3   A0A147BJE4   A0A0V1KNI7   A0A1S3L075   A0A2R5LIR9   A0A147BJE5   A0A1S3SSU6   A0A085LJR8   A0A147ADQ5   A0A0V1APA6   A0A085LQ67   A0A085MQM1   A0A0V1GXW8   A0A0V1ANZ5   A0A1Y1LR51   A0A267FRX0   A0A267F772   A0A0V1ANZ8   A0A146NT21   A0A146XMZ2   A0A1Y1MAK2   A0A1Y1NHT7   A0A267GNB6   A0A085LS29   A0A085N023   A0A131YR50  

Pubmed

25401762    25381665    17694394    29451363    24487278    17554307    + More
25970599    29652888    24929829    26383154    28004739    26830274   

EMBL

GFTR01008725    JAW07701.1    GBHO01042596    JAG01008.1    GBHO01042589    JAG01015.1    + More
JWZT01002984    KII68048.1    JWZT01003820    KII65460.1    JWZT01000439    KII74358.1    EF199622    ABM90393.1    JYDL01000080    KRX17894.1    EF199621    ABM90392.1    HADX01010638    SBP32870.1    JYDO01000377    KRZ65389.1    HADW01008367    SBP09767.1    GEFM01006397    JAP69399.1    JWZT01003054    KII67871.1    JWZT01005595    KII60489.1    JWZT01001161    KII72602.1    GBIH01000761    JAC93949.1    GEGO01002490    JAR92914.1    JYDH01000010    KRY40903.1    NIVC01001377    PAA68677.1    JYDP01000327    KRZ01162.1    NIVC01001652    PAA65446.1    JYDO01000093    KRZ71620.1    GEGO01004800    JAR90604.1    JYDJ01000151    KRX42156.1    JYDJ01000764    KRX33566.1    JYDJ01000011    KRX49884.1    JYDN01000036    KRX62850.1    HAEH01013823    SBR98409.1    JYDQ01000346    KRY08270.1    JYDL01000058    KRX19511.1    KL363295    KFD48373.1    KL363215    KFD53596.1    JYDQ01000124    KRY14116.1    NIVC01001575    PAA66240.1    KL367545    KFD65077.1    GEGO01004875    JAR90529.1    JYDP01000057    KRZ10689.1    NIVC01000183    PAA88548.1    GEFM01002211    JAP73585.1    JYDO01000236    KRZ66548.1    JYDN01000181    KRX54093.1    JYDW01000004    KRZ62956.1    GEGO01004729    JAR90675.1    NIRI01001153    RJW67559.1    GEZM01043158    JAV79264.1    GEGO01004533    JAR90871.1    JYDW01000348    KRZ48953.1    GGLE01005288    MBY09414.1    GEGO01004812    JAR90592.1    KL363640    KFD45214.1    GCES01009650    JAR76673.1    JYDH01000411    KRY26494.1    KL363340    KFD47113.1    KL367859    KFD59517.1    JYDP01000208    KRZ03007.1    JYDH01000405    KRY26518.1    GEZM01050895    JAV75318.1    NIVC01000860    PAA75827.1    NIVC01001308    PAA69606.1    JYDH01000399    KRY26536.1    GCES01151725    JAQ34597.1    GCES01042893    JAR43430.1    GEZM01036245    JAV82862.1    GEZM01002003    JAV97411.1    NIVC01000264    PAA86792.1    KL363314    KFD47775.1    KL367587    KFD62819.1    GEDV01006828    JAP81729.1   

Proteomes

UP000265100    UP000007879    UP000261560    UP000054630    UP000257200    UP000054843    + More
UP000265120    UP000001038    UP000085678    UP000054776    UP000215902    UP000055024    UP000192220    UP000055048    UP000054681    UP000054783    UP000054721    UP000087266    UP000265000   

Pfam

PF00665   rve        + More
PF00078   RVT_1
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF00098   zf-CCHC
PF17917   RT_RNaseH
PF00077   RVP

Interpro

IPR041577   RT_RNaseH_2        + More
IPR001584   Integrase_cat-core       
IPR012337   RNaseH-like_sf       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR021109   Peptidase_aspartic_dom_sf       
IPR000477   RT_dom       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR001995   Peptidase_A2_cat       
IPR001969   Aspartic_peptidase_AS       
IPR041373   RT_RNaseH       
IPR034128   K02A2.6-like       
IPR018061   Retropepsins       

SUPFAM

SSF50630   SSF50630        + More
SSF57756   SSF57756       
SSF53098   SSF53098       

Gene 3D

2.40.70.10     3.30.420.10    

CDD

cd05484  retropepsin_like_LTR_2

ProteinModelPortal

A0A224XI32   A0A0A9W3I3   A0A0A9W826   A0A0C2JFK2   A0A3P8Q506   A0A0C2MM68   + More
A0A0C2JXZ5   A0A1X7TIE8   A0A3P8NV61   A0A1X7TH22   A2TGR5   A0A1X7VU64   A0A3B3B4L9   A0A0V0RTT5   A0A3Q1EQC9   A0A3P8NEQ7   A2TGR4   A0A1A7YSF0   A0A0V1M0R9   A0A1A7WUZ7   A0A131XQT5   A0A3P8NHI5   A0A3P8QD94   A0A3P8VSE7   A0A3B3H2N7   A0A0C2MKX6   A0A0C2M800   A0A1S3HLN2   A0A0C2NF36   A0A090XCC9   A0A147BQ83   A0A3P8RGT3   A0A0V1BVI1   A0A267F699   A0A0V1GSV8   A0A267EVG4   A0A2I4C6V0   A0A0V1MIE6   A0A147BIP4   A0A3P8NEP7   A0A0V0TT39   A0A0V0T3M4   A0A0V0UEK4   A0A0V0VH28   A0A1A8QZH2   A0A0V0Z754   A0A0V0RYP2   A0A085LTS7   A0A085M8Q0   A0A0V0ZP51   A0A267EXJ4   A0A085N6I1   A0A147BIB8   A0A0V1HJS5   A0A267GR92   A0A131Y536   A0A0V1M3Q7   A0A2R2MK13   A0A0V0USW3   A0A0V1LU74   A0A147BK15   A0A3R7DF32   A0A1S3J391   A0A1Y1M058   A0A1S3KHX3   A0A147BJE4   A0A0V1KNI7   A0A1S3L075   A0A2R5LIR9   A0A147BJE5   A0A1S3SSU6   A0A085LJR8   A0A147ADQ5   A0A0V1APA6   A0A085LQ67   A0A085MQM1   A0A0V1GXW8   A0A0V1ANZ5   A0A1Y1LR51   A0A267FRX0   A0A267F772   A0A0V1ANZ8   A0A146NT21   A0A146XMZ2   A0A1Y1MAK2   A0A1Y1NHT7   A0A267GNB6   A0A085LS29   A0A085N023   A0A131YR50  

PDB

4OL8     E-value=5.23395e-54,     Score=539

KEGG

105842438    no KO assigned | (RefSeq) uncharacterized protein K02A2.6-like

GO

GO:0015074   GO:0003676   GO:0008270   GO:0004190   GO:0016874   GO:0006355   GO:0005515   GO:0005634   GO:0005737   GO:0006402   GO:0046872   GO:0003824  

Length:

1356

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.000540000000000001

Exp number, first 60 AAs:

0.0002

Total prob of N-in:

0.00002

outside

1  -  1356

 

 

Pi

197.993509

Theta

136.066527

Tajima's D

0.252542

CLR

128.29345

CSRT

0.43722813859307

Interpretation

Uncertain