Silkworm Genome Informatics Database

Gene

KWMTBOMO10152 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005634

Annotation

PREDICTED:_protein_shuttle_craft_[Bombyx_mori]

Location

Bomo_Chr17(-):3120933-3124043 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.073

CDS

ATGTCGCAGTGGAACAACTCTTACTCCTACAATGGTCAATACCAAGCTAACGGCTGGAACCGAGATGTTAATGGCCAATATGCAAATTCACAGTATTATAATAACAGACAAGATTCAAATAATCAATATGTGAGCTTCAACGAGTTCTTAACTCAAATACAAGGCGACAGTGCATCAGTCCCGGGCAATTCGGTTCATTATAATAATGTAAGATATGAAAACTATCCCACCACTCAATACAATTATCAGAACATGCCGTCTACTTCACAGAATAGATCACTAGATAGTTACAATTATCAAACAAATGTGAACCCAAGGAATCCCCAACAGTACCAAATGAATATGCAGAATCAATATGTGCCATCTGAAAGCTATAATAATGAAATTATACTAAAATCTAACTTAACACCTACTGCAACAGAATTTGTACCAAAGAGTATGGCTAAACAGATCACTGGTCACCAAAGTTTAGCAGAACCTGCAACTAATAACGTTAAGCATAATGATGCAAACTGGAGAGAAAGAGAGAGTTTACAACAAAATGGTGAAATTGTAACTAATCAGGTTTCTGAAAATAACAAAAGCCAATACTCCAAAACTCAAAACAGGGTACCTAATAGCCAAGATAATGCACATTCAAATGAATCCAATGTTAAAGTTAACGAACCAAGGCACAGAAATGGACATCGTAACAATGAGGCTAATGGTAGTTACTACAATCAAAATAATCAAAGTGAAAGTAAATCTCACAGTAATGAAATAAATAACCATAGTGATTCGAGTAGTAGATACTATGAAAATCAAAGAAATTATGATAGGAATGAGAAGAAAATCATATCAAAGACGAATCCCAAATCAAAACCAAGAGATGCAGATGCTCGTACATTCTACAACAGTTCCATTACTAAGGACAGTCAAGATGTTCGGAATGGAAGAGGTGAGAGTTCTGGCAGGCAAAGGAATTGGGTTGGAAGTCAAAGAATCAAACCTTCAGAGAAGTCAACTCCTGAAGATGAGCAATATGCTACCTCATACACTCAACAGAAACAGGAGAAAGTAGAGAGAAATAAAACAGAGAACATTCCAAGCCCAAACAGGTTTAGAAGCAAAAATATTGAACAAGCAATAAACAAAGAAATGACACAAAGGGAACGCCTGACTGATCAATTAGAAAAAGGTACATTAGAGTGTCTAGTATGTTGCGAGAGAGTAAAACAAACAGAATCCGTGTGGTCGTGTGGCAACTGCTACCATGTACTCCATCTTAGGTGCATAAGAAAATGGGCAATGAGTAGTTTGGTCGAGGGTAAATGGCGTTGCCCGGCTTGCCAAAATTCTAATGAGACGATTCCAACTGCGTGTCGATGCATGTGCGGCGCGATACGATCGCCTGAATACCAGCGAGGTGTGTGCGTCGCCCACACGTGCGGGAAGCAATGCCGTCGCCCTCGCGCCTGCCCACATCCATGTACATTATTATGCCACCCTGGACCTTGTCCACCGTGCCAAGCCACCATTACAAAGTAA

Protein

MSQWNNSYSYNGQYQANGWNRDVNGQYANSQYYNNRQDSNNQYVSFNEFLTQIQGDSASVPGNSVHYNNVRYENYPTTQYNYQNMPSTSQNRSLDSYNYQTNVNPRNPQQYQMNMQNQYVPSESYNNEIILKSNLTPTATEFVPKSMAKQITGHQSLAEPATNNVKHNDANWRERESLQQNGEIVTNQVSENNKSQYSKTQNRVPNSQDNAHSNESNVKVNEPRHRNGHRNNEANGSYYNQNNQSESKSHSNEINNHSDSSSRYYENQRNYDRNEKKIISKTNPKSKPRDADARTFYNSSITKDSQDVRNGRGESSGRQRNWVGSQRIKPSEKSTPEDEQYATSYTQQKQEKVERNKTENIPSPNRFRSKNIEQAINKEMTQRERLTDQLEKGTLECLVCCERVKQTESVWSCGNCYHVLHLRCIRKWAMSSLVEGKWRCPACQNSNETIPTACRCMCGAIRSPEYQRGVCVAHTCGKQCRRPRACPHPCTLLCHPGPCPPCQATITK

Uniprot

H9J7Z2 A0A194QGR9 A0A194QXJ0 A0A3S2LJM5 L7X1P9 D0AB98 + More
A0A1E1WDV1 A0A212EP74 A0A1B0GP93 A0A1B0CN35 E9IS85 E0VEM9 F4WM20

Pubmed

19121390 26354079 23674305 22118469 21282665 20566863 + More
21719571

EMBL

BABH01020191 BABH01020192 KQ459232 KPJ02641.1 KQ461155 KPJ08291.1 + More
RSAL01000090 RVE48091.1 KC469893 AGC92703.2 FP102340 CBH09293.1 GDQN01005891 JAT85163.1 AGBW02013517 OWR43279.1 AJVK01033236 AJVK01033237 AJWK01019755 GL765318 EFZ16557.1 DS235093 EEB11835.1 GL888217 EGI64664.1

Proteomes

UP000005204 UP000053268 UP000053240 UP000283053 UP000007151 UP000092462 + More
UP000092461 UP000009046 UP000007755

PRIDE

H9J7Z2

Pfam

PF01424 R3H + More
PF01422 zf-NF-X1

Interpro

IPR034076   R3H_NF-X1        + More
IPR034078   NFX1_fam
IPR001374   R3H_dom
IPR019787   Znf_PHD-finger
IPR036867   R3H_dom_sf
IPR019786   Zinc_finger_PHD-type_CS
IPR001841   Znf_RING
IPR000967   Znf_NFX1
IPR013083   Znf_RING/FYVE/PHD

SUPFAM

SSF82708 SSF82708

Gene 3D

3.30.1370.50 3.30.40.10

CDD

cd02643 R3H_NF-X1

ProteinModelPortal

H9J7Z2 A0A194QGR9 A0A194QXJ0 A0A3S2LJM5 L7X1P9 D0AB98 + More
A0A1E1WDV1 A0A212EP74 A0A1B0GP93 A0A1B0CN35 E9IS85 E0VEM9 F4WM20

PDB

1F62 E-value=0.0702758, Score=85

KEGG

101741751 K12236 transcriptional repressor NF-X1 | (RefSeq) protein shuttle craft

GO

GO:0005634 GO:0003700 GO:0008270 GO:0003676 GO:0006355 GO:0005515 GO:0005737 GO:0006402 GO:0046872 GO:0003824

PANTHER

PTHR12360

Length:

508

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00725

outside

1 - 508

Pi

214.951134

Theta

148.302925

Tajima's D

1.456743

CLR

0.082966

CSRT

0.775111244437778

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree