SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10147  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005635
Annotation
Sr_protein_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 2.048
 

Sequence

CDS
ATGAGTTACGGAAGACCTCCGCCACGAATCGATGGCATGGTCTCGTTAAAAGTAGATAATCTTACCTACCGAACGACGCCTGAAGACTTACGCCGCGTTTTCGAAAGGTGCGGAGAAGTTGGTGATATCTACATTCCCAGAGATCGGTACACAAGGGAAAGTAGAGGATTCGCCTTCGTGAGGTTTTTCGAGCGTCGTGACGCTGAAGAAGCCCTGGACACGATGGACGGACGAATGTTGGACGGCAGGGAACTTCGCGTTCAGATGGCGCGATATGGTCGCCCCTCATCGCCATACAGGAGTCGTTACGATCGCAGGCGCAGGTACGGAAAAATTAATTTACCACAAGCACGTCCAGGTCTCGTTCCCGCCGTCGTAGTTACTCGCGCAGTCGTAGCCGCAGCCGTTCGCGCAGTCGCTCTCGCTCTGACTCAAAGAGTTCCAGGGGACGTTCCCGCTCACACAGTCGTTCTCGCTCACGATCCAGACACTGAAATGTCCTTATGGTGTGAGAGTGTACCTGTTGAGAGCTGA
Protein
MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYGRPSSPYRSRYDRRRRYGKINLPQARPGLVPAVVVTRAVVAAAVRAVALALTQRVPGDVPAHTVVLAHDPDTEMSLWCESVPVES

Summary

Uniprot
Pfam
PF00076   RRM_1
Interpro
IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR035979   RBD_domain_sf       
IPR034893   SRSF2-like       
IPR000504   RRM_dom       
SUPFAM
SSF54928   SSF54928       
Gene 3D
ProteinModelPortal
PDB
2LEC     E-value=5.21881e-34,     Score=356

Ontologies

Topology

Length:
177
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.90194
Exp number, first 60 AAs:
0
Total prob of N-in:
0.07883
outside
1  -  177
 
 

Population Genetic Test Statistics

Pi
350.594182
Theta
183.08901
Tajima's D
3.075631
CLR
0.480749
CSRT
0.983050847457627
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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