Silkworm Genome Informatics Database

Gene

KWMTBOMO10147 Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005635

Annotation

Sr_protein_[Bombyx_mori]

Location

Bomo_Chr17(-):3088834-3092103 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.048

CDS

ATGAGTTACGGAAGACCTCCGCCACGAATCGATGGCATGGTCTCGTTAAAAGTAGATAATCTTACCTACCGAACGACGCCTGAAGACTTACGCCGCGTTTTCGAAAGGTGCGGAGAAGTTGGTGATATCTACATTCCCAGAGATCGGTACACAAGGGAAAGTAGAGGATTCGCCTTCGTGAGGTTTTTCGAGCGTCGTGACGCTGAAGAAGCCCTGGACACGATGGACGGACGAATGTTGGACGGCAGGGAACTTCGCGTTCAGATGGCGCGATATGGTCGCCCCTCATCGCCATACAGGAGTCGTTACGATCGCAGGCGCAGGTACGGAAAAATTAATTTACCACAAGCACGTCCAGGTCTCGTTCCCGCCGTCGTAGTTACTCGCGCAGTCGTAGCCGCAGCCGTTCGCGCAGTCGCTCTCGCTCTGACTCAAAGAGTTCCAGGGGACGTTCCCGCTCACACAGTCGTTCTCGCTCACGATCCAGACACTGAAATGTCCTTATGGTGTGAGAGTGTACCTGTTGAGAGCTGA

Protein

MSYGRPPPRIDGMVSLKVDNLTYRTTPEDLRRVFERCGEVGDIYIPRDRYTRESRGFAFVRFFERRDAEEALDTMDGRMLDGRELRVQMARYGRPSSPYRSRYDRRRRYGKINLPQARPGLVPAVVVTRAVVAAAVRAVALALTQRVPGDVPAHTVVLAHDPDTEMSLWCESVPVES

Uniprot

H9J7Z3

Pubmed

19121390

EMBL

BABH01020192

Proteomes

UP000005204

PRIDE

H9J7Z3

Pfam

PF00076 RRM_1

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR035979   RBD_domain_sf
IPR034893   SRSF2-like
IPR000504   RRM_dom

SUPFAM

SSF54928 SSF54928

Gene 3D

3.30.70.330

ProteinModelPortal

H9J7Z3

PDB

2LEC E-value=5.21881e-34, Score=356

KEGG

692842 K12891 splicing factor, arginine/serine-rich 2 | (RefSeq) Sr protein

GO

GO:0003723 GO:0003676 GO:0000166 GO:0006233 GO:0004535 GO:0005634 GO:0005737 GO:0006402 GO:0046872 GO:0003824

PANTHER

PTHR23147:SF145

Length:

177

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.90194

Exp number, first 60 AAs:

0

Total prob of N-in:

0.07883

outside

1 - 177

Pi

350.594182

Theta

183.08901

Tajima's D

3.075631

CLR

0.480749

CSRT

0.983050847457627

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree