Gene

KWMTBOMO10146  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005636

Annotation

hypothetical_protein_OBRU01_08954_[Operophtera_brumata]

Location

Bomo_Chr17(-):3071400-3072859      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 4.424

CDS

ATGTCGTCTTCGTTCTTCCTCAAAGGCAAATCTAGACAAGTTCAAAAAAGAAAAGGAGAAAAAATTAAAAAGAAACCTGTGAAGAAATCGACACTGTCTAACCTAGAAAACGGACACGAATCGTCCGATAGTGACTTAGATTTAAAGAAATTTTCAGATGCAGAAGAATCTGAAAGTGATCATGAGACAGTGGAGGAAAAGAAATTAAGGTTAGCTAAAAAATACTTAGAGGAAATTGAGAAAGAAGAAGCTAAACGAGCCGAAGAAAAGGAGATCGATGATGCAGTCCAAAAACGTTTACAAAGAGATTATCTTGAACAGAGAGGGAAACTTAAATTGGAACTTGCTGATAGATATCAGGCACCTACTGACAGCGATGTCAAAGTCATACGAGCTAAAGAACATCGACTTACTCTCACATGTGTTTGTATCAGTAATGATAGTACCTTAGTATTTACAGGCAGTAAATGTAGCACGATTGTTAAATGGAGTATCAAAGAAAAGAGAAAAGTTGGTACATTAACATATAAAACCCACTCGAATTTCTTAAAAGGTGGCATTACTAGTTTAGCTATATCAACAGATTCAAAATATCTCGCATCATCCGACGAGTCGTCCAACATTCAAATTTGGGACCCAATAACCTTTAAGCATATACACACATTTAAAGGACACAAAGATTCTGTCATAGGTCTAGTTTTTAGAAAGAATACACATGACATGTACTCTGCTAGTAAAGATCGCTCTGTAAAAATTTGGTCATTAGATGAAATGTCTTATGTGGAAACACTTTTTGGTCATCAAACTCCAATATCATCCATTGATGCATTGACAAGGGAGAGAGCAATAACGTCTGGTGGCAGGGACAGTACAATTAGAATTTGGAAAATAGTAGAGGAATCACAGCTAATATTCAATGGCCCTGTAGGTAGTCTTGATGAAGTGAAACTTTTGGATGAAGAACATTTTGTGTCTGGTAGTGATAATGGTTCCATTTGCCTATGGAGTGTCTTGAAGAAAAAACCATTATATATAGTCCCAGAGGCCCATGGCACCGAAAATGATGTTCCCAGGTGGATCACTAGCCTTGCAACTTTATTAAATTCAGATATTTTTGCATCTGGATCTTGGGACAATCAAATCAGACTGTGGAAAATTTATGACTCTTATAAGAAAGTGCAGCCTTTGTTCAGTATAGAAATAAACGGTTGTGTTAACTGTATGCAGTTTACTTGCGATGGTAATCAATTATATGTGGCAGTGGGACAAGAACACAAAGCTGGGAGGTGGTTTAAGTTGTCATCTGTCAAAAATGGTCTTGCAATTGTTAATTTTAAAATAGAATAA

Protein

MSSSFFLKGKSRQVQKRKGEKIKKKPVKKSTLSNLENGHESSDSDLDLKKFSDAEESESDHETVEEKKLRLAKKYLEEIEKEEAKRAEEKEIDDAVQKRLQRDYLEQRGKLKLELADRYQAPTDSDVKVIRAKEHRLTLTCVCISNDSTLVFTGSKCSTIVKWSIKEKRKVGTLTYKTHSNFLKGGITSLAISTDSKYLASSDESSNIQIWDPITFKHIHTFKGHKDSVIGLVFRKNTHDMYSASKDRSVKIWSLDEMSYVETLFGHQTPISSIDALTRERAITSGGRDSTIRIWKIVEESQLIFNGPVGSLDEVKLLDEEHFVSGSDNGSICLWSVLKKKPLYIVPEAHGTENDVPRWITSLATLLNSDIFASGSWDNQIRLWKIYDSYKKVQPLFSIEINGCVNCMQFTCDGNQLYVAVGQEHKAGRWFKLSSVKNGLAIVNFKIE

Uniprot

H9J7Z4   A0A2H1VL51   A0A0L7LHQ2   A0A2A4K1S8   A0A194QAS4   D0AB94   + More
L7X0R6   A0A194QTG6   A0A212EP66   G3K858   G3K8Y0   G3K859   G3K8X4   G3K8X6   G3K8Y3   G3K8X8   G3K8Y5   G3K8X1   G3K8W7   G3K843   G3K840   G3K851   G3K845   G3K8V2   G3K8W2   G3K8V9   G3K8V5   G3K8Y2   G3K8W9   G3K8Y1   G3K8X0   G3K8W8   G3K8V0   G3K857   G3K830   G3K8U7   G3K8W4   G3K829   G3K831   G3K852   G3K846   G3K833   G3K841   G3K854   G3K847   G3K848   G3K8V6   G3K8W5   G3K8W1   G3K8X9   G3K8W0   G3K850   G3K832   G3K8X3   G3K8X7   G3K8W3   G3K853   G3K838   G3K835   G3K855   G3K828   G3K8U8   G3K8W6   G3K8V3   G3K8V1   G3K837   G3K842   G3K834   G3K849   G3K8V7   G3K826   G3K844   G3K8V8   G3K839   G3K856   G3K8U9   G3K827   G3K836   G3K8V4   A0A1W4X574   A0A067R9Q0   A0A2J7Q7C7   A0A2P8Z244   A0A1Y1MRJ2   A0A0T6B2W4   N6UJL7   J3JWQ4   K7IS33   C3Z2P5   A0A232EHX8   A0A1B6FB43   A0A1B6JML6   E9G172   A7SNL4   A0A154P860   A0A0N0BFZ9  

Pubmed

19121390    26227816    26354079    23674305    22118469    21841803    + More
24845553    29403074    28004739    23537049    22516182    20075255    18563158    28648823    21292972    17615350   

EMBL

BABH01020196    ODYU01003152    SOQ41547.1    JTDY01001151    KOB74726.1    NWSH01000227    + More
PCG78221.1    KQ459232    KPJ02638.1    FP102340    CBH09289.1    KC469893    AGC92699.1    KQ461155    KPJ08295.1    AGBW02013517    OWR43283.1    JN174180    AEN68499.1    JN174452    AEN67795.1    JN174181    AEN68500.1    JN174446    AEN67789.1    JN174448    AEN67791.1    JN174455    AEN67798.1    JN174450    AEN67793.1    JN174457    AEN67800.1    JN174443    AEN67786.1    JN174439    AEN67782.1    JN174165    AEN68484.1    JN174162    AEN68481.1    JN174173    AEN68492.1    JN174167    AEN68486.1    JN174424    AEN67767.1    JN174434    AEN67777.1    JN174431    AEN67774.1    JN174427    AEN67770.1    JN174454    AEN67797.1    JN174441    AEN67784.1    JN174453    AEN67796.1    JN174442    AEN67785.1    JN174440    AEN67783.1    JN174422    AEN67765.1    JN174179    AEN68498.1    JN174152    AEN68471.1    JN174419    AEN67762.1    JN174436    AEN67779.1    JN174151    AEN68470.1    JN174153    AEN68472.1    JN174174    AEN68493.1    JN174168    AEN68487.1    JN174155    AEN68474.1    JN174163    AEN68482.1    JN174176    AEN68495.1    JN174169    AEN68488.1    JN174170    AEN68489.1    JN174428    AEN67771.1    JN174437    AEN67780.1    JN174433    AEN67776.1    JN174451    AEN67794.1    JN174432    AEN67775.1    JN174172    AEN68491.1    JN174154    AEN68473.1    JN174445    AEN67788.1    JN174449    AEN67792.1    JN174435    AEN67778.1    JN174175    AEN68494.1    JN174160    AEN68479.1    JN174157    AEN68476.1    JN174177    AEN68496.1    JN174150    AEN68469.1    JN174420    AEN67763.1    JN174438    AEN67781.1    JN174425    AEN67768.1    JN174423    AEN67766.1    JN174159    AEN68478.1    JN174164    AEN68483.1    JN174156    AEN68475.1    JN174171    AEN68490.1    JN174429    AEN67772.1    JN174148    AEN68467.1    JN174166    AEN68485.1    JN174430    AEN67773.1    JN174161    AEN68480.1    JN174178    AEN68497.1    JN174421    AEN67764.1    JN174149    AEN68468.1    JN174158    AEN68477.1    JN174426    AEN67769.1    KK852798    KDR16357.1    NEVH01017443    PNF24480.1    PYGN01000234    PSN50565.1    GEZM01026224    JAV87135.1    LJIG01016083    KRT81666.1    APGK01017173    KB739998    KB631368    KB632318    ENN81940.1    ERL84269.1    ERL92258.1    BT127672    AEE62634.1    GG666574    EEN53296.1    NNAY01004383    OXU17969.1    GECZ01022367    JAS47402.1    GECU01007222    JAT00485.1    GL732529    EFX86622.1    DS469722    EDO34676.1    KQ434827    KZC07524.1    KQ435794    KOX73841.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000053268    UP000053240    UP000007151    + More
UP000192223    UP000027135    UP000235965    UP000245037    UP000019118    UP000030742    UP000002358    UP000001554    UP000215335    UP000000305    UP000001593    UP000076502    UP000053105   

PRIDE

H9J7Z4   

Pfam

PF00400   WD40

Interpro

IPR020472   G-protein_beta_WD-40_rep        + More
IPR036322   WD40_repeat_dom_sf       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR039241   Rrp9-like       
IPR017986   WD40_repeat_dom       
IPR001680   WD40_repeat       
IPR019775   WD40_repeat_CS       

SUPFAM

SSF50978   SSF50978       

Gene 3D

2.130.10.10    

ProteinModelPortal

H9J7Z4   A0A2H1VL51   A0A0L7LHQ2   A0A2A4K1S8   A0A194QAS4   D0AB94   + More
L7X0R6   A0A194QTG6   A0A212EP66   G3K858   G3K8Y0   G3K859   G3K8X4   G3K8X6   G3K8Y3   G3K8X8   G3K8Y5   G3K8X1   G3K8W7   G3K843   G3K840   G3K851   G3K845   G3K8V2   G3K8W2   G3K8V9   G3K8V5   G3K8Y2   G3K8W9   G3K8Y1   G3K8X0   G3K8W8   G3K8V0   G3K857   G3K830   G3K8U7   G3K8W4   G3K829   G3K831   G3K852   G3K846   G3K833   G3K841   G3K854   G3K847   G3K848   G3K8V6   G3K8W5   G3K8W1   G3K8X9   G3K8W0   G3K850   G3K832   G3K8X3   G3K8X7   G3K8W3   G3K853   G3K838   G3K835   G3K855   G3K828   G3K8U8   G3K8W6   G3K8V3   G3K8V1   G3K837   G3K842   G3K834   G3K849   G3K8V7   G3K826   G3K844   G3K8V8   G3K839   G3K856   G3K8U9   G3K827   G3K836   G3K8V4   A0A1W4X574   A0A067R9Q0   A0A2J7Q7C7   A0A2P8Z244   A0A1Y1MRJ2   A0A0T6B2W4   N6UJL7   J3JWQ4   K7IS33   C3Z2P5   A0A232EHX8   A0A1B6FB43   A0A1B6JML6   E9G172   A7SNL4   A0A154P860   A0A0N0BFZ9  

PDB

4JXM     E-value=2.39001e-87,     Score=822

KEGG

101743156    K14793 ribosomal RNA-processing protein 9 | (RefSeq) U3 small nucleolar RNA-interacting protein 2

GO

GO:0034511   GO:0006364   GO:0032040   GO:0005515   GO:0005488   GO:0006233   GO:0004535   GO:0003723   GO:0005634   GO:0005737   GO:0006402   GO:0046872   GO:0003824  

PANTHER

PTHR19865  

Length:

448

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00164

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00128

outside

1  -  448

 

 

Pi

391.791389

Theta

203.073714

Tajima's D

2.785023

CLR

0

CSRT

0.965451727413629

Interpretation

Uncertain