Gene

KWMTBOMO10140  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005564

Annotation

putative_regulator_of_ribosome_biosynthesis_[Danaus_plexippus]

Location

Bomo_Chr17(+):3027400-3029541      View in EpiBrowser

Full name

Ribosome biogenesis regulatory protein      

Location in the cell

Nuclear   Reliability : 3.647

CDS

ATGGATATTGTAAATGAGATATTAGAAAGGGAACAAAAGAAATCAGATAAATATAAACCAATAACGGTCGAAAAACATTTGGAATTAGAATTCGACCTAGGTTCACTATTGGCCTCTGACACAAACGATTTGGACATAAAAACGCTGAAGACAAACAAAGATTCATATTTACTTGCATTGACCCGTGACAATGCTCAGCTACTACTGAATAAAGTATGGGAGCTTCCCACTGAAAGAATCGAAGAGGCCATAGTAGTTCGATTGCCACAACCTACGACAATCCTACCCCGAGCCAAGCCAGTGCCTGTACCTAAGCCATTAACTAAATGGCAAGAGTTCGCAAAAGCCAAGGGTATTAATAAGAAAAAGAAAGACAAACTTCAATGGGATGAACAGCTGCAGAAATGGGTTCCTTTATATGGTTTCAAGAAAACTGCAGCTGAAAAAGAGAAGAACTGGCTTATAGAAGTCCCACAGAATTTAGATCCTATGACAGATATGTACGAAAAGAAAGCCGGTGAAAAATCAGAAAAGGTTGCAAAGAATGAATTACAGAGACTTAAGAATCTCGCTAGAGCCAAAAAGGTTAAAATACCAAGGGTGGGGCTTCCTGTCACTTCAGATAAAGCTTCTGCCACACAGTTATCCACAGCAGCAAGTGTAGCAAAAGCATCAACGGCTTCTCTTGGAAAATTCCAAGATAAATTACCCAAAGAGAAAGAAGCACGCGGTAAAGGTGTACATGAGCTAATCCCAGGCAAGGAGAGGAAACGTAAAGCACCTATACCAACACCGGCAGCAGAAAAAGAATACAACCTGAATCTACTTGATAATATACTGAGTAAGAGGCCAAAAATTGATATGGATAAAGCTGTAGCGAAAAGTATAAACGAAGAGGAAGTCAAGAGATCACACGAAAAGAAAAATATGAAACCCGGCTTAGGAAAACGTAAAACTCAAGGTAAAGGCAATGCAACAAATTTCTCAGCCAAGAAACCTAAAGCAGGAAAGGGAAAAAGGGCACCAAATAAGAAATCTACTGGACGGAAAAGGAGATAG

Protein

MDIVNEILEREQKKSDKYKPITVEKHLELEFDLGSLLASDTNDLDIKTLKTNKDSYLLALTRDNAQLLLNKVWELPTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEFAKAKGINKKKKDKLQWDEQLQKWVPLYGFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKNELQRLKNLARAKKVKIPRVGLPVTSDKASATQLSTAASVAKASTASLGKFQDKLPKEKEARGKGVHELIPGKERKRKAPIPTPAAEKEYNLNLLDNILSKRPKIDMDKAVAKSINEEEVKRSHEKKNMKPGLGKRKTQGKGNATNFSAKKPKAGKGKRAPNKKSTGRKRR

Description

Involved in ribosomal large subunit assembly.

Similarity

Belongs to the RRS1 family.

Uniprot

H9J7S2   A0A2A4ITB1   A0A212EP87   A0A2H1VL48   A0A194QS32   A0A194QGR3   + More
L7WW96   S4P990   A0A3S2NTH0   D0AB92   V5GY55   A0A1W4WUT8   A0A1E1W5Q7   D6WYE6   A0A0L7LHQ7   B4QIT9   B4HUK6   B3NCA6   B4MMK6   A0A034VTY3   T1PJD2   Q8I937   Q5U108   Q8MR24   B4PJ94   A0A0K8W283   A0A2P8ZKX9   A0A1I8Q5B5   A0A1B6FRP9   Q29E60   A0A0T6AXH7   A0A1A9WFD9   A0A2J7QE87   A0A3B0JAL9   A0A1W4UXM3   B3M3K9   N6SU73   U4U2Z0   B4LH49   W8BVJ0   A0A067QV73   B4KWD7   A0A0L0BTG8   A0A1B6K3G3   A0A1B6D477   A0A336M239   A0A1B0AIB8   A0A1B0AXV7   A0A1A9Y9S5   A0A1A9VMM9   B4IXK7   A0A1B6LCL1   A0A2P8ZKY1   T1GLH1   A0A1J1I7B0   W5JLE2   A0A1L8DR56   A0A3F2YQA2   T1DGG2   A0A2M4BT71   A0A2M3Z4L4   A0A2M3Z4R0   A0A2M4AEW1   B0WLT8   A0A182JHH6   A0A1Q3EXZ5   U5EZJ3   A0A182K0P7   A0A182PIV7   Q1HQP0   A0A0A9W6R7   A0A182N7F6   A0A182R6Q0   A0A182SHG0   A0A182H631   A0A084WMV8   A0A182WI32   A0A0V0G8A8   A0A182QAW1   A0A182M8C4   A0A1Y1N8H0   A0A0C9RYN0   A0A182TTF9   A0A182UWW1   A0A182X278   Q7QIE7   A0A182I6D8   A0A182L3Z7   A0A151J1Y6   A0A151JY20   A0A195AUQ8   A0A158P0Y1   A0A069DSJ1   A0A170YP31   R4G3Z0   A0A182Y885   A0A226ETN0   A0A154PAI6   A0A310S7H9  

Pubmed

19121390    22118469    26354079    23674305    23622113    18362917    + More
19820115    26227816    17994087    22936249    25348373    25315136    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    17550304    29403074    15632085    23537049    24495485    24845553    26108605    20920257    23761445    17204158    17510324    25401762    26823975    26483478    24438588    28004739    12364791    14747013    17210077    20966253    21347285    26334808    25244985   

EMBL

BABH01020201    NWSH01007563    PCG62909.1    AGBW02013517    OWR43286.1    ODYU01003152    + More
SOQ41545.1    KQ461155    KPJ08297.1    KQ459232    KPJ02636.1    KC469893    AGC92697.1    GAIX01005611    JAA86949.1    RSAL01000090    RVE48098.1    FP102340    CBH09287.1    GALX01001699    JAB66767.1    GDQN01008741    JAT82313.1    KQ971362    EFA09302.2    JTDY01001151    KOB74731.1    CM000363    CM002912    EDX09364.1    KMY97817.1    CH480817    EDW50627.1    CH954178    EDV51064.1    CH963847    EDW73412.1    GAKP01013672    GAKP01013668    JAC45280.1    KA648225    AFP62854.1    AE014296    AAN12230.2    BT016084    AAV36969.1    AY122167    AAM52679.1    CM000159    EDW93562.1    GDHF01007113    JAI45201.1    PYGN01000026    PSN57154.1    GECZ01016909    JAS52860.1    CH379070    EAL30202.2    LJIG01022622    KRT79581.1    NEVH01015318    PNF26909.1    OUUW01000002    SPP77503.1    CH902618    EDV40302.2    APGK01057007    KB741277    ENN71244.1    KB631850    ERL86708.1    CH940647    EDW69539.1    GAMC01003338    JAC03218.1    KK852980    KDR12965.1    CH933809    EDW18544.1    JRES01001371    KNC23288.1    GECU01001707    JAT06000.1    GEDC01016923    JAS20375.1    UFQS01000438    UFQT01000438    SSX03937.1    SSX24302.1    JXJN01005431    CH916366    EDV97469.1    GEBQ01018550    JAT21427.1    PSN57155.1    CAQQ02089587    CAQQ02089588    CVRI01000042    CRK95634.1    ADMH02001223    ETN63594.1    GFDF01005116    JAV08968.1    GAMD01002786    JAA98804.1    GGFJ01006990    MBW56131.1    GGFM01002711    MBW23462.1    GGFM01002734    MBW23485.1    GGFK01006010    MBW39331.1    DS231990    EDS30666.1    GFDL01014967    JAV20078.1    GANO01000694    JAB59177.1    DQ440404    CH477848    ABF18437.1    EAT35662.1    GBHO01039492    GDHC01016444    GDHC01004449    JAG04112.1    JAQ02185.1    JAQ14180.1    JXUM01026938    KQ560772    KXJ80947.1    ATLV01024521    KE525352    KFB51552.1    GECL01002128    JAP03996.1    AXCN02000573    AXCM01002040    GEZM01009899    JAV94234.1    GBYB01014390    JAG84157.1    AAAB01008807    EAA04194.3    APCN01003620    KQ980514    KYN15747.1    KQ981515    KYN40768.1    KQ976738    KYM75755.1    ADTU01005902    GBGD01002024    JAC86865.1    GEMB01003105    JAS00104.1    ACPB03014183    GAHY01001800    JAA75710.1    LNIX01000002    OXA60590.1    KQ434846    KZC08238.1    KQ773232    OAD52408.1   

Proteomes

UP000005204    UP000218220    UP000007151    UP000053240    UP000053268    UP000283053    + More
UP000192223    UP000007266    UP000037510    UP000000304    UP000001292    UP000008711    UP000007798    UP000095301    UP000000803    UP000002282    UP000245037    UP000095300    UP000001819    UP000091820    UP000235965    UP000268350    UP000192221    UP000007801    UP000019118    UP000030742    UP000008792    UP000027135    UP000009192    UP000037069    UP000092445    UP000092460    UP000092443    UP000078200    UP000001070    UP000015102    UP000183832    UP000000673    UP000069272    UP000002320    UP000075880    UP000075881    UP000075885    UP000008820    UP000075884    UP000075900    UP000075901    UP000069940    UP000249989    UP000030765    UP000075920    UP000075886    UP000075883    UP000075902    UP000075903    UP000076407    UP000007062    UP000075840    UP000075882    UP000078492    UP000078541    UP000078540    UP000005205    UP000015103    UP000076408    UP000198287    UP000076502   

PRIDE

H9J7S2    Q8I937    Q5U108    Q8MR24   

Pfam

PF04939   RRS1        + More
PF00078   RVT_1
PF07847   PCO_ADO

Interpro

IPR007023   Ribosom_reg        + More
IPR000477   RT_dom       
IPR014710   RmlC-like_jellyroll       
IPR011051   RmlC_Cupin_sf       
IPR012864   PCO/ADO       

SUPFAM

SSF51182   SSF51182       

Gene 3D

2.60.120.10    

ProteinModelPortal

H9J7S2   A0A2A4ITB1   A0A212EP87   A0A2H1VL48   A0A194QS32   A0A194QGR3   + More
L7WW96   S4P990   A0A3S2NTH0   D0AB92   V5GY55   A0A1W4WUT8   A0A1E1W5Q7   D6WYE6   A0A0L7LHQ7   B4QIT9   B4HUK6   B3NCA6   B4MMK6   A0A034VTY3   T1PJD2   Q8I937   Q5U108   Q8MR24   B4PJ94   A0A0K8W283   A0A2P8ZKX9   A0A1I8Q5B5   A0A1B6FRP9   Q29E60   A0A0T6AXH7   A0A1A9WFD9   A0A2J7QE87   A0A3B0JAL9   A0A1W4UXM3   B3M3K9   N6SU73   U4U2Z0   B4LH49   W8BVJ0   A0A067QV73   B4KWD7   A0A0L0BTG8   A0A1B6K3G3   A0A1B6D477   A0A336M239   A0A1B0AIB8   A0A1B0AXV7   A0A1A9Y9S5   A0A1A9VMM9   B4IXK7   A0A1B6LCL1   A0A2P8ZKY1   T1GLH1   A0A1J1I7B0   W5JLE2   A0A1L8DR56   A0A3F2YQA2   T1DGG2   A0A2M4BT71   A0A2M3Z4L4   A0A2M3Z4R0   A0A2M4AEW1   B0WLT8   A0A182JHH6   A0A1Q3EXZ5   U5EZJ3   A0A182K0P7   A0A182PIV7   Q1HQP0   A0A0A9W6R7   A0A182N7F6   A0A182R6Q0   A0A182SHG0   A0A182H631   A0A084WMV8   A0A182WI32   A0A0V0G8A8   A0A182QAW1   A0A182M8C4   A0A1Y1N8H0   A0A0C9RYN0   A0A182TTF9   A0A182UWW1   A0A182X278   Q7QIE7   A0A182I6D8   A0A182L3Z7   A0A151J1Y6   A0A151JY20   A0A195AUQ8   A0A158P0Y1   A0A069DSJ1   A0A170YP31   R4G3Z0   A0A182Y885   A0A226ETN0   A0A154PAI6   A0A310S7H9  

PDB

6FT6     E-value=1.18517e-17,     Score=220

KEGG

101743869    K14852 regulator of ribosome biosynthesis | (RefSeq) ribosome biogenesis regulatory protein homolog

GO

GO:0005634   GO:0042254   GO:0042273   GO:0000055   GO:0030687   GO:0005730   GO:0000447   GO:0016740   GO:0016702   GO:0006468   GO:0004535   GO:0003723   GO:0005737   GO:0006402   GO:0046872   GO:0003824  

PANTHER

PTHR17602  

Subcellular location

Nucleus  

Length:

352

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00023

Exp number, first 60 AAs:

0

Total prob of N-in:

0.04916

outside

1  -  352

 

 

Pi

34.72755

Theta

51.311326

Tajima's D

-0.996897

CLR

124.759923

CSRT

0.138643067846608

Interpretation

Uncertain