SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO10140  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005564
Annotation
putative_regulator_of_ribosome_biosynthesis_[Danaus_plexippus]
Full name
Ribosome biogenesis regulatory protein      
Location in the cell
Nuclear   Reliability : 3.647
 

Sequence

CDS
ATGGATATTGTAAATGAGATATTAGAAAGGGAACAAAAGAAATCAGATAAATATAAACCAATAACGGTCGAAAAACATTTGGAATTAGAATTCGACCTAGGTTCACTATTGGCCTCTGACACAAACGATTTGGACATAAAAACGCTGAAGACAAACAAAGATTCATATTTACTTGCATTGACCCGTGACAATGCTCAGCTACTACTGAATAAAGTATGGGAGCTTCCCACTGAAAGAATCGAAGAGGCCATAGTAGTTCGATTGCCACAACCTACGACAATCCTACCCCGAGCCAAGCCAGTGCCTGTACCTAAGCCATTAACTAAATGGCAAGAGTTCGCAAAAGCCAAGGGTATTAATAAGAAAAAGAAAGACAAACTTCAATGGGATGAACAGCTGCAGAAATGGGTTCCTTTATATGGTTTCAAGAAAACTGCAGCTGAAAAAGAGAAGAACTGGCTTATAGAAGTCCCACAGAATTTAGATCCTATGACAGATATGTACGAAAAGAAAGCCGGTGAAAAATCAGAAAAGGTTGCAAAGAATGAATTACAGAGACTTAAGAATCTCGCTAGAGCCAAAAAGGTTAAAATACCAAGGGTGGGGCTTCCTGTCACTTCAGATAAAGCTTCTGCCACACAGTTATCCACAGCAGCAAGTGTAGCAAAAGCATCAACGGCTTCTCTTGGAAAATTCCAAGATAAATTACCCAAAGAGAAAGAAGCACGCGGTAAAGGTGTACATGAGCTAATCCCAGGCAAGGAGAGGAAACGTAAAGCACCTATACCAACACCGGCAGCAGAAAAAGAATACAACCTGAATCTACTTGATAATATACTGAGTAAGAGGCCAAAAATTGATATGGATAAAGCTGTAGCGAAAAGTATAAACGAAGAGGAAGTCAAGAGATCACACGAAAAGAAAAATATGAAACCCGGCTTAGGAAAACGTAAAACTCAAGGTAAAGGCAATGCAACAAATTTCTCAGCCAAGAAACCTAAAGCAGGAAAGGGAAAAAGGGCACCAAATAAGAAATCTACTGGACGGAAAAGGAGATAG
Protein
MDIVNEILEREQKKSDKYKPITVEKHLELEFDLGSLLASDTNDLDIKTLKTNKDSYLLALTRDNAQLLLNKVWELPTERIEEAIVVRLPQPTTILPRAKPVPVPKPLTKWQEFAKAKGINKKKKDKLQWDEQLQKWVPLYGFKKTAAEKEKNWLIEVPQNLDPMTDMYEKKAGEKSEKVAKNELQRLKNLARAKKVKIPRVGLPVTSDKASATQLSTAASVAKASTASLGKFQDKLPKEKEARGKGVHELIPGKERKRKAPIPTPAAEKEYNLNLLDNILSKRPKIDMDKAVAKSINEEEVKRSHEKKNMKPGLGKRKTQGKGNATNFSAKKPKAGKGKRAPNKKSTGRKRR

Summary

Description
Involved in ribosomal large subunit assembly.
Similarity
Belongs to the RRS1 family.
EMBL
BABH01020201    NWSH01007563    PCG62909.1    AGBW02013517    OWR43286.1    ODYU01003152    + More
SOQ41545.1    KQ461155    KPJ08297.1    KQ459232    KPJ02636.1    KC469893    AGC92697.1    GAIX01005611    JAA86949.1    RSAL01000090    RVE48098.1    FP102340    CBH09287.1    GALX01001699    JAB66767.1    GDQN01008741    JAT82313.1    KQ971362    EFA09302.2    JTDY01001151    KOB74731.1    CM000363    CM002912    EDX09364.1    KMY97817.1    CH480817    EDW50627.1    CH954178    EDV51064.1    CH963847    EDW73412.1    GAKP01013672    GAKP01013668    JAC45280.1    KA648225    AFP62854.1    AE014296    AAN12230.2    BT016084    AAV36969.1    AY122167    AAM52679.1    CM000159    EDW93562.1    GDHF01007113    JAI45201.1    PYGN01000026    PSN57154.1    GECZ01016909    JAS52860.1    CH379070    EAL30202.2    LJIG01022622    KRT79581.1    NEVH01015318    PNF26909.1    OUUW01000002    SPP77503.1    CH902618    EDV40302.2    APGK01057007    KB741277    ENN71244.1    KB631850    ERL86708.1    CH940647    EDW69539.1    GAMC01003338    JAC03218.1    KK852980    KDR12965.1    CH933809    EDW18544.1    JRES01001371    KNC23288.1    GECU01001707    JAT06000.1    GEDC01016923    JAS20375.1    UFQS01000438    UFQT01000438    SSX03937.1    SSX24302.1    JXJN01005431    CH916366    EDV97469.1    GEBQ01018550    JAT21427.1    PSN57155.1    CAQQ02089587    CAQQ02089588    CVRI01000042    CRK95634.1    ADMH02001223    ETN63594.1    GFDF01005116    JAV08968.1    GAMD01002786    JAA98804.1    GGFJ01006990    MBW56131.1    GGFM01002711    MBW23462.1    GGFM01002734    MBW23485.1    GGFK01006010    MBW39331.1    DS231990    EDS30666.1    GFDL01014967    JAV20078.1    GANO01000694    JAB59177.1    DQ440404    CH477848    ABF18437.1    EAT35662.1    GBHO01039492    GDHC01016444    GDHC01004449    JAG04112.1    JAQ02185.1    JAQ14180.1    JXUM01026938    KQ560772    KXJ80947.1    ATLV01024521    KE525352    KFB51552.1    GECL01002128    JAP03996.1    AXCN02000573    AXCM01002040    GEZM01009899    JAV94234.1    GBYB01014390    JAG84157.1    AAAB01008807    EAA04194.3    APCN01003620    KQ980514    KYN15747.1    KQ981515    KYN40768.1    KQ976738    KYM75755.1    ADTU01005902    GBGD01002024    JAC86865.1    GEMB01003105    JAS00104.1    ACPB03014183    GAHY01001800    JAA75710.1    LNIX01000002    OXA60590.1    KQ434846    KZC08238.1    KQ773232    OAD52408.1   
Pfam
PF04939   RRS1        + More
PF00078   RVT_1
PF07847   PCO_ADO
Interpro
IPR007023   Ribosom_reg        + More
IPR000477   RT_dom       
IPR014710   RmlC-like_jellyroll       
IPR011051   RmlC_Cupin_sf       
IPR012864   PCO/ADO       
SUPFAM
SSF51182   SSF51182       
Gene 3D
PDB
6FT6     E-value=1.18517e-17,     Score=220

Ontologies

Topology

Subcellular location
Nucleus  
Length:
352
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00023
Exp number, first 60 AAs:
0
Total prob of N-in:
0.04916
outside
1  -  352
 
 

Population Genetic Test Statistics

Pi
34.72755
Theta
51.311326
Tajima's D
-0.996897
CLR
124.759923
CSRT
0.138643067846608
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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