Gene

KWMTBOMO10139

Pre Gene Modal

BGIBMGA005640

Annotation

Cockayne_syndrome_protein_[Operophtera_brumata]

Location

Bomo_Chr17(-):3023111-3026039      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.839

CDS

ATGGTGGACATAAACAAATATTTAGAAATGCAACTTGAATTAGCGAAAAAGCAAATTGAGAGGAAAAATAGTCAGAAAGAAGATGTATCAACTAAAAGCAAATCTGCTGCTGATTACATATCGCAAAAACAGGCAAAGACTCTGTCAAAATTTCCTCACAATCAAAAAGTAGATGTAAAAACTACTGTGACATCAGGGACTTCAACTGAAGGACACCTCGATGACATCGATTTTGTACCTTCCGATGAGGAAGACGAAAGTATCCATAATTTTCCGCTTACTGCGTGTTCTTCTCGTACCAAACAGAATATAAACCGAATTGTTGACGACGGTGATATTAAACAATACAATTTAAGGGTAGAGGTTTGGCGTGAAGGATTAAATACTGTGAAAAGCGGTACATATGAAGGATGCTCGTTAACCGCTGACATACAGTACATCCTGGATGGTAATAAAGATAGCGAAGAAATGCATGAACTCCAGAATGGTCTATTAGTACCAAAATATATTTGGAAACAGTTATATAAATTTCAAAGAACTGGTGTTAAATGGCTTTGGGAGTTGCATCAAGTGGAGTCTGGTGGATTGTTAGGTGATGAAATGGGACTTGGTAAAACAATACAAGTCATTGCATTCCTCACCGCCCTTTCAAAAACCAATTTAGGATCATGGGGCGGTCTTGGTCCGAGTATCATTATCACACCTGCAACGGTTATATATCAATGGGTATCTCATTTTCATTATTGGTGCCCCCTGCTCAGAGTAGCTGTACTGCATCACACTGGCTCTCATGCTGGTAATCACCATAAACTATTAAGGGATATACACAGTGCTCATGGAATCTTGTTAGTAACATATGCAGGCATAGTAAAGTATCATAAAGAACTCAATGCCTATAGTTGGCATTATTTAATTTTGGATGAAGGACACAAAATACGTAATCCTGATACACAAGTAAGTAAAATTGTAAAAAAAATCCAGACACCACACAGATTGTTAATAACAGGTTCACCAATGCAGAACAGTTTGCAGGAACTGTGGTCATTATTTGATTTTATGAGGCCAGGTTTGTTGGGGACATACAATGCATTCATAGAACATTTTGCAGTTCCAATCACTCAAGGAGGCTATGCTAATGCTACTGAAATACAGGAAGCTACTGCCATGGAAATAGCTATTGCTTTGAAAAATATGATCACTCCTTACATGCTGAGGAGAACTAAGGCTGAGGTACAAGGACATATCAAACTCCCAGAAAAGAATGAACAAGTTCTATTCTGTTCTTTAACACAAGAGCAAAGAGATCTTTATATGGGTTACCTTATGAGTAGTACAGTGAGAAGCATCTTAGACAAAGAAAATAAATTTGGAAATCCATTAAGAGCAAGGCTACTAGTGGCTCTGTCAACGCTAAGGAAAATATGCAATCATCCTGATATTTATCTCTATGAAGCTCAAGAAGATGAAGAACAGATAGATGAAGAGATATTTGGCCATTGGAAGAGATCTGGAAAAATGACTGTTGTTAATTCATTACTTAAAATATGGAAAAAACAGGGACATAGAGCTCTCATATTCTCTCAGTCAAGAGTAATGCTGTGTCTGTTAGAACAGTATTTACAAAATCAAGGCTTTAAATACCTCAAAATGGATGGTACAGTTAATGTTGGCCAAAGGCAAAACTTGATTAAAACTTTTAATGATAACACTGATTATTTAGTTTTTCTTTCAACAACTAGAGTAGGTGGCTTAGGTGTAAATTTAACTGGAGCCGACAGAGTGATTATATATGATCCTGATTGGAATCCTGCAACAGATGATCAAGCAAAGGAAAGAGCATGGAGGATAGGCCAATCTAGAAATGTAACAGTTTATAGATTGTTGTCAGCTGGGACTATAGAGGAAAAGATTTATCAGAGGCAGATATTCAAACATTTCTTGAGTAATAAAATTTTTGTGGACCCAAATCAAAAGAATTTTTTGACCACCAGTACATTACAGGGACTGTTCACTCTTGAAGAGCTTAACCGTGACGGAGATACTGAAACTGCATCAATTTTTAAACACACCAAAATTATCAATAAAACCAATAAGGATGATAATGACTTGGATATTTCATCTAAAACAAAGTTAGAAGCCATGAAAAGATTAGCAAAAGAAATAAGTAAAAAAATATCAAAAGAATCCATGAAGGGAACACAGGAAAGTGATCCACGTGAAGAATATAAAAAGAAAAGAGAACAATTATTATGTCCACCTAAAGTGGAAGAACCAGATATTAATTTAGTTGATGATAAAATAACCAATGTAGCTTTTGAAGATGTTTTGTCAGAATTAGATATTGTAAAAATGCATGCAAAGAAAGATTATGAAGAACAATTGTTGAAAAGTGTACTAGAAGATAGTGAACAAGATATTAAAGAAGTAGATGAAGAGAAACCTACCAACATTGACAACTCTCAACTTGAAACTAATGAAAGTACTGTAAAAGATATTAAACAAAGGCATAAAAAATCACATAAAATAAAGCGCAAAAGAAGATTATCATCTTCCATTGATGATGGACTCAAAAATTTAGTAACTGTAAAGAAAGTAAAGAAAAGGATTATAGTAAAAATGAAGTAA

Protein

MVDINKYLEMQLELAKKQIERKNSQKEDVSTKSKSAADYISQKQAKTLSKFPHNQKVDVKTTVTSGTSTEGHLDDIDFVPSDEEDESIHNFPLTACSSRTKQNINRIVDDGDIKQYNLRVEVWREGLNTVKSGTYEGCSLTADIQYILDGNKDSEEMHELQNGLLVPKYIWKQLYKFQRTGVKWLWELHQVESGGLLGDEMGLGKTIQVIAFLTALSKTNLGSWGGLGPSIIITPATVIYQWVSHFHYWCPLLRVAVLHHTGSHAGNHHKLLRDIHSAHGILLVTYAGIVKYHKELNAYSWHYLILDEGHKIRNPDTQVSKIVKKIQTPHRLLITGSPMQNSLQELWSLFDFMRPGLLGTYNAFIEHFAVPITQGGYANATEIQEATAMEIAIALKNMITPYMLRRTKAEVQGHIKLPEKNEQVLFCSLTQEQRDLYMGYLMSSTVRSILDKENKFGNPLRARLLVALSTLRKICNHPDIYLYEAQEDEEQIDEEIFGHWKRSGKMTVVNSLLKIWKKQGHRALIFSQSRVMLCLLEQYLQNQGFKYLKMDGTVNVGQRQNLIKTFNDNTDYLVFLSTTRVGGLGVNLTGADRVIIYDPDWNPATDDQAKERAWRIGQSRNVTVYRLLSAGTIEEKIYQRQIFKHFLSNKIFVDPNQKNFLTTSTLQGLFTLEELNRDGDTETASIFKHTKIINKTNKDDNDLDISSKTKLEAMKRLAKEISKKISKESMKGTQESDPREEYKKKREQLLCPPKVEEPDINLVDDKITNVAFEDVLSELDIVKMHAKKDYEEQLLKSVLEDSEQDIKEVDEEKPTNIDNSQLETNESTVKDIKQRHKKSHKIKRKRRLSSSIDDGLKNLVTVKKVKKRIIVKMK

Uniprot

H9J7Z8   A0A0L7LLZ6   A0A2A4JD02   E3UKJ6   L7X1P1   A0A194QXK5   + More
A0A194QAY5   D0AB88   A0A2H1VL62   A0A212EP84   D6WQR8   A0A154PN39   A0A088AQ00   K7J3J4   A0A232FE21   A0A2A3EJZ4   A0A0L7QLV0   A0A1Y1KCK3   A0A2J7Q3N2   A0A0C9RBF4   A0A151WWB2   A0A1Y1KDE8   A0A026W8Z2   A0A1B6DRP9   F4WJ78   A0A067QXI6   A0A158NED4   A0A195BX22   A0A195CAG4   A0A151J6K1   A0A2Z5U5Z9   H0ZD23   A0A218UXI1   U3JYN5   A0A091N177   A0A091FPW4   A0A091ECV7   A0A093IEP1   A0A091KR04   A0A093QHQ1   E1BYA8   A0A091JDH4   A0A091LPB5   A0A3L8SKU3   A0A091UMZ7   A0A1V4KKV1   A0A0A0AQU7   F1R294   G1N7W0   A0A091Q912   A0A091PS46   A0A091UHQ3   A0A093R180   A0A091TAS4   A0A093HJK3   A0A094KYG1   U3J9Q7   A0A091IEY6   A0A0P6GYJ3   A0A0P5ZPG8   A0A0P5DCD7   A0A0P6AVW5   A0A165A3J8   A0A3B4B6R9   A0A0M8ZQ55   A0A0P5D7G3   W5M9D1   R0JQI4   A0A087QZ10   A0A0P5CLD2   A0A0P5CLI3   A0A0P5D036   A0A0N8AA90   A0A091GMZ3   A0A093NG49   A0A0P5DVE3   L5KAG3   A0A3Q2Z7L0   A0A3B4BMT4   A0A1L8FKT9   A0A1W4XWV5   A0A3Q2FG36   A0A1W4XVY9  

Pubmed

19121390    26227816    23674305    26354079    22118469    18362917    + More
19820115    20075255    28648823    28004739    24508170    21719571    24845553    21347285    26760975    20360741    15592404    30282656    23594743    20838655    23749191    25463417    23258410    27762356   

EMBL

BABH01020201    JTDY01000686    KOB76216.1    NWSH01001832    PCG69965.1    HM449870    + More
ADO33005.1    KC469893    AGC92693.1    KQ461155    KPJ08306.1    KQ459232    KPJ02627.1    FP102340    CBH09283.1    ODYU01003152    SOQ41541.1    AGBW02013517    OWR43289.1    KQ971354    EFA07002.2    KQ434998    KZC13269.1    NNAY01000390    OXU28718.1    KZ288232    PBC31516.1    KQ414905    KOC59628.1    GEZM01088381    JAV58228.1    NEVH01019065    PNF23187.1    GBYB01013814    JAG83581.1    KQ982696    KYQ51971.1    GEZM01088380    JAV58230.1    KK107388    EZA51499.1    GEDC01008947    JAS28351.1    GL888182    EGI65656.1    KK853134    KDR10852.1    ADTU01013257    ADTU01013258    KQ976401    KYM92518.1    KQ978023    KYM97864.1    KQ979851    KYN18853.1    FX985816    BBA93703.1    ABQF01027374    ABQF01027375    ABQF01027376    ABQF01027377    ABQF01027378    ABQF01027379    ABQF01027380    MUZQ01000106    OWK58211.1    AGTO01000148    KK839952    KFP82644.1    KL447250    KFO71011.1    KK718105    KFO54269.1    KL215552    KFV65211.1    KK755005    KFP43029.1    KL672532    KFW85930.1    AADN05000339    KK501886    KFP18652.1    KK505808    KFP61313.1    QUSF01000014    RLW03973.1    KL409688    KFQ91270.1    LSYS01003057    OPJ84447.1    KL872592    KGL96282.1    CR762493    KK690606    KFQ16455.1    KK645687    KFP98775.1    KK436209    KFQ90314.1    KL424518    KFW89922.1    KK443449    KFQ70947.1    KL206495    KFV82828.1    KL267025    KFZ62302.1    ADON01089224    ADON01089225    KL218641    KFP07189.1    GDIQ01039149    JAN55588.1    GDIP01041139    JAM62576.1    GDIP01159619    JAJ63783.1    GDIP01025796    JAM77919.1    LRGB01000642    KZS17136.1    KQ435922    KOX68657.1    GDIP01160127    JAJ63275.1    AHAT01025219    AHAT01025220    KB743335    EOA99371.1    KL226002    KFM06464.1    GDIP01168821    JAJ54581.1    GDIP01168822    JAJ54580.1    GDIP01168116    GDIP01167218    JAJ56184.1    GDIP01167217    JAJ56185.1    KL504946    KFO84504.1    KL224536    KFW60990.1    GDIP01168115    JAJ55287.1    KB030894    ELK08347.1    CM004478    OCT72187.1   

Proteomes

UP000005204    UP000037510    UP000218220    UP000053240    UP000053268    UP000007151    + More
UP000007266    UP000076502    UP000005203    UP000002358    UP000215335    UP000242457    UP000053825    UP000235965    UP000075809    UP000053097    UP000007755    UP000027135    UP000005205    UP000078540    UP000078542    UP000078492    UP000007754    UP000197619    UP000016665    UP000053760    UP000052976    UP000053875    UP000053258    UP000000539    UP000053119    UP000276834    UP000053283    UP000190648    UP000053858    UP000000437    UP000001645    UP000053584    UP000016666    UP000054308    UP000076858    UP000261520    UP000053105    UP000018468    UP000053286    UP000054081    UP000010552    UP000264820    UP000261440    UP000186698    UP000192224    UP000265020   

PRIDE

H9J7Z8    E1BYA8   

Pfam

PF00176   SNF2_N        + More
PF00271   Helicase_C

Interpro

IPR014001   Helicase_ATP-bd        + More
IPR001650   Helicase_C       
IPR027417   P-loop_NTPase       
IPR038718   SNF2-like_sf       
IPR000330   SNF2_N       

SUPFAM

SSF52540   SSF52540       

Gene 3D

3.40.50.10810    

CDD

cd00079  HELICc

ProteinModelPortal

H9J7Z8   A0A0L7LLZ6   A0A2A4JD02   E3UKJ6   L7X1P1   A0A194QXK5   + More
A0A194QAY5   D0AB88   A0A2H1VL62   A0A212EP84   D6WQR8   A0A154PN39   A0A088AQ00   K7J3J4   A0A232FE21   A0A2A3EJZ4   A0A0L7QLV0   A0A1Y1KCK3   A0A2J7Q3N2   A0A0C9RBF4   A0A151WWB2   A0A1Y1KDE8   A0A026W8Z2   A0A1B6DRP9   F4WJ78   A0A067QXI6   A0A158NED4   A0A195BX22   A0A195CAG4   A0A151J6K1   A0A2Z5U5Z9   H0ZD23   A0A218UXI1   U3JYN5   A0A091N177   A0A091FPW4   A0A091ECV7   A0A093IEP1   A0A091KR04   A0A093QHQ1   E1BYA8   A0A091JDH4   A0A091LPB5   A0A3L8SKU3   A0A091UMZ7   A0A1V4KKV1   A0A0A0AQU7   F1R294   G1N7W0   A0A091Q912   A0A091PS46   A0A091UHQ3   A0A093R180   A0A091TAS4   A0A093HJK3   A0A094KYG1   U3J9Q7   A0A091IEY6   A0A0P6GYJ3   A0A0P5ZPG8   A0A0P5DCD7   A0A0P6AVW5   A0A165A3J8   A0A3B4B6R9   A0A0M8ZQ55   A0A0P5D7G3   W5M9D1   R0JQI4   A0A087QZ10   A0A0P5CLD2   A0A0P5CLI3   A0A0P5D036   A0A0N8AA90   A0A091GMZ3   A0A093NG49   A0A0P5DVE3   L5KAG3   A0A3Q2Z7L0   A0A3B4BMT4   A0A1L8FKT9   A0A1W4XWV5   A0A3Q2FG36   A0A1W4XVY9  

PDB

5VVR     E-value=2.78165e-132,     Score=1212

KEGG

105841236    K10841 DNA excision repair protein ERCC-6 | (RefSeq) DNA excision repair protein ERCC-6-like

GO

GO:0005524   GO:0045739   GO:0035264   GO:0032786   GO:0000303   GO:0010224   GO:0003682   GO:0003677   GO:0005730   GO:0006283   GO:0006290   GO:0008022   GO:0007257   GO:0044877   GO:0008630   GO:0010165   GO:0006284   GO:0010332   GO:0006362   GO:0008023   GO:0008094   GO:0007256   GO:0030296   GO:0045494   GO:0009636   GO:0047485   GO:0006974   GO:0006468   GO:0004535   GO:0003723   GO:0005634   GO:0005737   GO:0006402   GO:0046872   GO:0003824  

Length:

874

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.85405

Exp number, first 60 AAs:

0

Total prob of N-in:

0.08063

outside

1  -  874

 

 

Pi

19.739753

Theta

33.3508

Tajima's D

-1.157369

CLR

111.178279

CSRT

0.112094395280236

Interpretation

Uncertain